Wall clock time and date at job start Tue Mar 31 2020 19:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.61274 * 2 1 4 4 C 1.53376 * 109.60795 * 120.51660 * 2 1 3 5 5 N 1.46961 * 108.63483 * 70.31997 * 4 2 1 6 6 C 1.34783 * 120.59317 * 235.20334 * 5 4 2 7 7 O 1.21627 * 119.99732 * 8.47851 * 6 5 4 8 8 C 1.47262 * 119.99993 * 188.48490 * 6 5 4 9 9 N 1.33558 * 123.14509 * 7.45024 * 8 6 5 10 10 C 1.28647 * 115.76895 * 179.97438 * 9 8 6 11 11 S 1.70770 * 110.55942 * 359.97438 * 10 9 8 12 12 C 1.35208 * 123.13929 * 187.15901 * 8 6 5 13 13 C 1.50705 * 125.58430 * 0.02562 * 12 8 6 14 14 C 1.53005 * 117.49577 * 188.61787 * 13 12 8 15 15 C 1.52998 * 59.99938 * 252.51653 * 14 13 12 16 16 C 1.46963 * 118.81448 * 55.22304 * 5 4 2 17 17 C 1.53374 * 108.63566 * 304.77091 * 16 5 4 18 18 H 1.09001 * 109.75183 * 289.59779 * 17 16 5 19 19 C 1.53003 * 109.60726 * 169.16752 * 17 16 5 20 20 N 1.46962 * 109.60619 * 239.65636 * 2 1 3 21 21 C 1.36939 * 120.59301 * 115.45840 * 20 2 1 22 22 H 1.07994 * 120.00344 * 142.24924 * 21 20 2 23 23 C 1.38816 * 119.99962 * 322.25605 * 21 20 2 24 24 N 1.31618 * 119.99847 * 357.75399 * 23 21 20 25 25 Si 1.86802 * 119.99947 * 177.74988 * 23 21 20 26 26 H 1.48501 * 109.46872 * 60.00101 * 25 23 21 27 27 H 1.48496 * 109.47086 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47176 * 300.00219 * 25 23 21 29 29 H 1.09000 * 109.47264 * 180.34339 * 1 2 3 30 30 H 1.09004 * 109.46800 * 300.33766 * 1 2 3 31 31 H 1.08997 * 109.46948 * 60.33671 * 1 2 3 32 32 H 1.09005 * 109.60537 * 190.05708 * 4 2 1 33 33 H 1.08994 * 109.61060 * 310.57451 * 4 2 1 34 34 H 1.08001 * 124.72234 * 180.02562 * 10 9 8 35 35 H 1.08993 * 115.55054 * 334.33411 * 13 12 8 36 36 H 1.09002 * 117.49948 * 0.02562 * 14 13 12 37 37 H 1.08997 * 117.49369 * 145.01857 * 14 13 12 38 38 H 1.09008 * 117.49425 * 252.50824 * 15 14 13 39 39 H 1.08996 * 117.51763 * 107.49232 * 15 14 13 40 40 H 1.09008 * 109.60671 * 185.02872 * 16 5 4 41 41 H 1.08998 * 109.60904 * 64.52046 * 16 5 4 42 42 H 1.08993 * 109.47342 * 305.24326 * 19 17 16 43 43 H 1.09001 * 109.47048 * 65.24238 * 19 17 16 44 44 H 1.08997 * 109.46599 * 185.24150 * 19 17 16 45 45 H 0.97000 * 119.99221 * 185.00677 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8959 1.0267 0.0000 4 6 2.0447 -0.7337 1.2447 5 7 1.7605 -2.1678 1.0955 6 6 1.0605 -2.8300 2.0379 7 8 0.5266 -2.2164 2.9422 8 6 0.9421 -4.2964 1.9726 9 7 1.6171 -5.0452 1.0966 10 6 1.4066 -6.3125 1.1650 11 16 0.2852 -6.6682 2.4028 12 6 0.1441 -5.0110 2.7976 13 6 -0.7285 -4.4398 3.8855 14 6 -1.4021 -5.4263 4.8417 15 6 -2.2344 -4.6920 3.7886 16 6 2.2537 -2.8671 -0.0993 17 6 1.7389 -2.1335 -1.3440 18 1 0.6640 -2.2851 -1.4426 19 6 2.4497 -2.6713 -2.5876 20 7 2.0232 -0.6994 -1.1948 21 6 2.7344 -0.0266 -2.1523 22 1 3.5630 -0.5097 -2.6485 23 6 2.3902 1.2764 -2.4850 24 7 1.3533 1.8499 -1.9122 25 14 3.3989 2.2159 -3.7457 26 1 3.3667 1.4939 -5.0430 27 1 2.8286 3.5756 -3.9222 28 1 4.8030 2.3248 -3.2746 29 1 -0.3634 -1.0276 0.0062 30 1 -0.3633 0.5191 0.8870 31 1 -0.3633 0.5086 -0.8930 32 1 3.1199 -0.5818 1.3403 33 1 1.5384 -0.3506 2.1306 34 1 1.8745 -7.0491 0.5286 35 1 -0.4037 -3.4834 4.2951 36 1 -1.2139 -6.4883 4.6840 37 1 -1.5204 -5.1189 5.8807 38 1 -2.9004 -3.9016 4.1349 39 1 -2.5942 -5.2707 2.9378 40 1 1.8853 -3.8931 -0.1008 41 1 3.3437 -2.8672 -0.0993 42 1 3.5283 -2.5954 -2.4509 43 1 2.1753 -3.7152 -2.7400 44 1 2.1516 -2.0865 -3.4577 45 1 1.0689 2.7326 -2.1965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880466870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:17 Heat of formation + Delta-G solvation = 66.231911 kcal Electronic energy + Delta-G solvation = -28031.381352 eV Core-core repulsion = 24370.552520 eV Total energy + Delta-G solvation = -3660.828832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90209 -40.07485 -38.80353 -38.14458 -35.62689 -34.29487 -33.18380 -31.49906 -29.74355 -28.38224 -27.44710 -26.34511 -25.47063 -23.50925 -23.20568 -23.08037 -22.30380 -20.84749 -20.00996 -19.17124 -17.94203 -17.58058 -17.25837 -16.78040 -16.67512 -16.36300 -15.90902 -15.68418 -15.28227 -15.14013 -15.09326 -14.90067 -14.64719 -14.12298 -13.61830 -13.49635 -13.27955 -13.07389 -12.89268 -12.80874 -12.76990 -12.54124 -12.47671 -12.35977 -12.30908 -12.06100 -11.99696 -11.79679 -11.65697 -11.56679 -11.38206 -10.88570 -10.43270 -10.29509 -10.10643 -9.93211 -9.58671 -8.34436 -7.80873 -5.36793 -0.49725 0.24264 0.62162 0.94923 1.49786 1.50259 1.56542 2.10926 2.27914 2.53921 2.90611 3.11558 3.35604 3.44243 3.59470 3.75305 3.94964 4.02944 4.19218 4.23354 4.27138 4.42450 4.54455 4.58576 4.62961 4.63960 4.67859 4.73248 4.79791 4.89744 4.93760 4.94480 5.09676 5.14206 5.15193 5.16096 5.26359 5.40824 5.50377 5.57716 5.73525 5.77791 5.83560 6.37354 6.53262 6.58737 7.13763 7.23727 7.88231 8.47454 9.24570 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.003528 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.372239 B = 7935.083982 C = 8782.807752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.185 3.815 3 H 0.074 0.926 4 C 0.102 3.898 5 N -0.582 5.582 6 C 0.577 3.423 7 O -0.573 6.573 8 C -0.025 4.025 9 N -0.458 5.458 10 C -0.008 4.008 11 S 0.289 5.711 12 C -0.165 4.165 13 C -0.120 4.120 14 C -0.149 4.149 15 C -0.160 4.160 16 C 0.079 3.921 17 C 0.150 3.850 18 H 0.004 0.996 19 C -0.121 4.121 20 N -0.596 5.596 21 C -0.256 4.256 22 H 0.068 0.932 23 C -0.037 4.037 24 N -0.925 5.925 25 Si 0.961 3.039 26 H -0.277 1.277 27 H -0.298 1.298 28 H -0.279 1.279 29 H 0.015 0.985 30 H 0.032 0.968 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.246 0.754 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.153 0.847 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 -22.391 9.750 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.078 3.922 3 H 0.092 0.908 4 C -0.023 4.023 5 N -0.311 5.311 6 C 0.365 3.635 7 O -0.454 6.454 8 C -0.158 4.158 9 N -0.172 5.172 10 C -0.306 4.306 11 S 0.546 5.454 12 C -0.289 4.289 13 C -0.141 4.141 14 C -0.186 4.186 15 C -0.198 4.198 16 C -0.045 4.045 17 C 0.043 3.957 18 H 0.022 0.978 19 C -0.179 4.179 20 N -0.320 5.320 21 C -0.386 4.386 22 H 0.086 0.914 23 C -0.233 4.233 24 N -0.570 5.570 25 Si 0.789 3.211 26 H -0.203 1.203 27 H -0.225 1.225 28 H -0.206 1.206 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.262 0.738 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.169 0.831 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.544 -22.613 10.128 25.030 hybrid contribution 0.597 2.568 -0.934 2.797 sum -2.948 -20.045 9.194 22.249 Atomic orbital electron populations 1.21733 0.98384 0.97527 0.99737 1.20520 0.92030 0.95631 0.84053 0.90789 1.22233 0.99501 0.80568 0.99975 1.47867 1.52447 1.09698 1.21079 1.17635 0.78290 0.85946 0.81664 1.90650 1.48912 1.68819 1.37046 1.20081 1.02433 0.94745 0.98587 1.66779 1.23631 1.05180 1.21638 1.29254 1.02020 0.95839 1.03478 1.82281 1.36999 0.99331 1.26772 1.25065 1.01972 1.00337 1.01546 1.20638 0.93838 1.01825 0.97784 1.23268 1.01075 0.97530 0.96712 1.23168 0.91007 1.03594 1.02077 1.23387 0.98558 0.99790 0.82769 1.21016 0.95317 0.84812 0.94512 0.97784 1.21617 1.00011 0.99884 0.96360 1.44290 1.63138 1.04633 1.19948 1.19314 1.08524 0.95926 1.14822 0.91397 1.26009 0.97668 0.99685 0.99975 1.70055 1.27813 1.15765 1.43359 0.85460 0.78319 0.77323 0.79951 1.20324 1.22488 1.20550 0.96579 0.94876 0.93432 0.92389 0.90685 0.73805 0.86537 0.86755 0.86405 0.87696 0.87787 0.83064 0.92879 0.92790 0.90654 0.93617 0.94277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.75 8.91 71.98 0.64 -5.10 16 2 C 0.19 9.29 2.33 45.03 0.10 9.40 16 3 H 0.07 4.19 6.24 -2.39 -0.01 4.17 16 4 C 0.10 4.53 5.97 86.42 0.52 5.04 16 5 N -0.58 -23.99 2.59 -822.05 -2.13 -26.12 16 6 C 0.58 22.97 7.64 86.61 0.66 23.63 16 7 O -0.57 -24.93 13.59 -4.12 -0.06 -24.99 16 8 C -0.03 -0.80 6.48 40.56 0.26 -0.54 16 9 N -0.46 -12.06 6.79 -193.03 -1.31 -13.37 16 10 C -0.01 -0.13 12.17 130.71 1.59 1.46 16 11 S 0.29 3.96 21.77 -56.49 -1.23 2.74 16 12 C -0.16 -4.09 6.04 24.99 0.15 -3.94 16 13 C -0.12 -2.92 5.48 -11.54 -0.06 -2.99 16 14 C -0.15 -2.25 10.03 30.60 0.31 -1.94 16 15 C -0.16 -3.01 10.23 30.59 0.31 -2.70 16 16 C 0.08 3.00 5.49 86.42 0.47 3.47 16 17 C 0.15 6.45 3.23 45.03 0.15 6.59 16 18 H 0.00 0.21 7.41 -2.39 -0.02 0.19 16 19 C -0.12 -4.46 8.02 71.98 0.58 -3.88 16 20 N -0.60 -30.09 2.66 -650.69 -1.73 -31.82 16 21 C -0.26 -13.71 8.24 84.03 0.69 -13.02 16 22 H 0.07 3.53 6.59 -2.91 -0.02 3.51 16 23 C -0.04 -2.05 5.19 84.86 0.44 -1.61 16 24 N -0.92 -53.60 9.76 21.65 0.21 -53.38 16 25 Si 0.96 44.57 29.56 68.60 2.03 46.60 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 29 H 0.02 0.76 7.02 -2.39 -0.02 0.75 16 30 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.05 2.62 6.98 -2.39 -0.02 2.60 16 32 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 33 H 0.07 3.36 6.97 -2.39 -0.02 3.34 16 34 H 0.25 1.60 8.06 -2.91 -0.02 1.57 16 35 H 0.12 3.66 6.06 -2.39 -0.01 3.64 16 36 H 0.11 1.25 7.28 -2.39 -0.02 1.23 16 37 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.15 5.12 4.02 -47.11 -0.19 4.93 16 41 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 42 H 0.05 1.95 7.59 -2.39 -0.02 1.93 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.04 1.86 7.49 -2.39 -0.02 1.84 16 45 H 0.25 14.15 8.32 -92.71 -0.77 13.38 16 Total: -1.00 -70.56 360.47 3.43 -67.13 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.83 Total: 19.34 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 6.82 Total: 13.87 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -4.96 Total: -124.70 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.06 Total: -24.99 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.23 Total: 2.74 kcal Total: -70.56 3.43 -67.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880466870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.365 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds