Wall clock time and date at job start Tue Mar 31 2020 19:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99593 * 2 1 4 4 O 1.20822 * 120.00416 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99466 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.46944 * 205.00090 * 5 3 2 7 7 C 1.52998 * 109.47265 * 84.99884 * 5 3 2 8 8 O 1.42894 * 109.47143 * 299.99650 * 7 5 3 9 9 N 1.46499 * 109.47404 * 324.99699 * 5 3 2 10 10 C 1.34777 * 120.00345 * 180.02562 * 9 5 3 11 11 O 1.21284 * 119.99721 * 0.27469 * 10 9 5 12 12 C 1.50701 * 120.00227 * 179.97438 * 10 9 5 13 13 C 1.52996 * 109.47064 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47056 * 55.00268 * 13 12 10 15 15 C 1.50699 * 109.47078 * 295.00065 * 13 12 10 16 16 H 1.07995 * 120.00495 * 325.84479 * 15 13 12 17 17 C 1.37875 * 119.99736 * 145.84394 * 15 13 12 18 18 N 1.31510 * 120.00157 * 6.11650 * 17 15 13 19 19 Si 1.86810 * 119.99991 * 186.11459 * 17 15 13 20 20 H 1.48504 * 109.46634 * 90.00035 * 19 17 15 21 21 H 1.48497 * 109.47168 * 209.99908 * 19 17 15 22 22 H 1.48493 * 109.46929 * 330.00134 * 19 17 15 23 23 C 1.50701 * 109.47030 * 175.00201 * 13 12 10 24 24 C 1.38240 * 120.00055 * 63.45765 * 23 13 12 25 25 C 1.38233 * 119.99859 * 179.79009 * 24 23 13 26 26 C 1.38238 * 120.00054 * 0.43917 * 25 24 23 27 27 C 1.38240 * 119.99870 * 359.81806 * 26 25 24 28 28 C 1.38232 * 119.99857 * 243.73417 * 23 13 12 29 29 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47347 * 299.99920 * 1 2 3 31 31 H 1.08998 * 109.47087 * 60.00272 * 1 2 3 32 32 H 1.08994 * 109.47229 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.46688 * 299.99881 * 6 5 3 34 34 H 1.08995 * 109.46819 * 59.99577 * 6 5 3 35 35 H 1.09004 * 109.46747 * 59.99899 * 7 5 3 36 36 H 1.08998 * 109.46788 * 179.97438 * 7 5 3 37 37 H 0.96704 * 114.00337 * 179.97438 * 8 7 5 38 38 H 0.97003 * 119.99719 * 359.97438 * 9 5 3 39 39 H 1.09004 * 109.47064 * 300.00226 * 12 10 9 40 40 H 1.09005 * 109.46558 * 59.99566 * 12 10 9 41 41 H 0.97005 * 120.00256 * 180.02562 * 18 17 15 42 42 H 1.07994 * 119.99650 * 0.02562 * 24 23 13 43 43 H 1.08002 * 120.00068 * 180.27605 * 25 24 23 44 44 H 1.07997 * 120.00240 * 179.83410 * 26 25 24 45 45 H 1.07997 * 119.99646 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.00466 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0070 2.6073 0.6102 7 6 4.0828 1.1757 -1.4362 8 8 3.6714 -0.0687 -2.0054 9 7 4.1129 0.1708 0.7933 10 6 5.4467 0.0389 0.9356 11 8 6.1942 0.8373 0.4114 12 6 6.0089 -1.0965 1.7515 13 6 7.5368 -1.0165 1.7520 14 1 7.8490 -0.0329 2.1029 15 6 8.0518 -1.2376 0.3531 16 1 7.5371 -1.9162 -0.3110 17 6 9.1801 -0.5734 -0.0791 18 7 9.8754 0.1587 0.7635 19 14 9.7211 -0.7134 -1.8616 20 1 9.0833 0.3652 -2.6586 21 1 11.1980 -0.5814 -1.9425 22 1 9.3120 -2.0352 -2.4007 23 6 8.0950 -2.0765 2.6661 24 6 7.8908 -3.4135 2.3800 25 6 8.4065 -4.3859 3.2163 26 6 9.1188 -4.0212 4.3435 27 6 9.3185 -2.6842 4.6324 28 6 8.8064 -1.7119 3.7938 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 5.0954 2.6645 0.6102 33 1 3.6003 3.4288 0.0203 34 1 3.6390 2.6779 1.6337 35 1 3.6761 1.9972 -2.0259 36 1 5.1713 1.2332 -1.4357 37 1 3.9640 -0.1999 -2.9177 38 1 3.5149 -0.4650 1.2164 39 1 5.6406 -1.0256 2.7750 40 1 5.6952 -2.0459 1.3174 41 1 10.6691 0.6263 0.4594 42 1 7.3315 -3.6982 1.5012 43 1 8.2508 -5.4304 2.9904 44 1 9.5195 -4.7809 4.9983 45 1 9.8754 -2.3994 5.5129 46 1 8.9626 -0.6673 4.0196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909591342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:55 Heat of formation + Delta-G solvation = -141.560072 kcal Electronic energy + Delta-G solvation = -30007.646344 eV Core-core repulsion = 25862.761353 eV Total energy + Delta-G solvation = -4144.884991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96292 -39.26327 -38.27821 -36.90869 -36.46901 -34.71981 -33.82587 -31.64059 -30.89382 -29.98395 -28.53940 -28.12807 -26.15580 -25.50577 -23.93778 -22.73897 -21.61529 -20.61417 -19.63273 -19.17306 -18.12723 -17.38713 -16.96158 -16.60036 -16.46215 -16.04254 -15.46639 -15.15294 -14.63227 -14.52298 -14.18348 -13.97030 -13.83221 -13.66880 -13.30155 -13.11754 -12.72789 -12.50693 -12.34962 -12.27184 -12.20810 -12.02832 -11.97085 -11.70608 -11.59994 -11.41883 -10.91093 -10.88096 -10.69413 -10.57928 -10.53869 -10.23872 -10.04731 -9.97770 -9.43123 -9.03105 -8.79470 -8.66332 -8.32686 -8.02270 -7.58737 -5.93008 -3.92042 1.99089 2.31099 2.36781 2.53426 3.36757 3.42176 3.43862 3.44451 3.53644 4.11174 4.51560 4.59473 4.77235 4.93253 4.94636 5.02954 5.24138 5.31959 5.36475 5.43127 5.62900 5.68301 5.75131 5.81934 5.84732 5.86602 5.94534 6.12439 6.17354 6.22482 6.31026 6.35586 6.43531 6.56091 6.73518 6.82903 6.92983 7.06581 7.33294 7.46423 7.54354 7.56358 7.70023 7.87343 7.96978 8.02322 8.08396 8.39938 9.01773 9.08441 9.69658 11.17126 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.003943 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.839570 B = 7099.843840 C = 8396.999479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.341 6.341 3 C 0.474 3.526 4 O -0.505 6.505 5 C 0.202 3.798 6 C -0.156 4.156 7 C 0.062 3.938 8 O -0.561 6.561 9 N -0.732 5.732 10 C 0.524 3.476 11 O -0.494 6.494 12 C -0.121 4.121 13 C 0.081 3.919 14 H 0.072 0.928 15 C -0.489 4.489 16 H 0.051 0.949 17 C 0.079 3.921 18 N -0.881 5.881 19 Si 0.885 3.115 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.021 4.021 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.129 4.129 28 C -0.119 4.119 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.380 0.620 38 H 0.401 0.599 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.258 0.742 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.199 -1.539 1.139 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.256 6.256 3 C 0.316 3.684 4 O -0.392 6.392 5 C 0.113 3.887 6 C -0.214 4.214 7 C -0.017 4.017 8 O -0.366 6.366 9 N -0.390 5.390 10 C 0.311 3.689 11 O -0.366 6.366 12 C -0.161 4.161 13 C 0.062 3.938 14 H 0.091 0.909 15 C -0.527 4.527 16 H 0.069 0.931 17 C -0.124 4.124 18 N -0.518 5.518 19 Si 0.714 3.286 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.021 4.021 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.147 4.147 28 C -0.137 4.137 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.227 0.773 38 H 0.236 0.764 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.960 -0.602 1.348 14.038 hybrid contribution 0.158 -0.300 -1.493 1.531 sum -13.802 -0.901 -0.145 13.832 Atomic orbital electron populations 1.23278 0.76653 1.03735 1.02291 1.86579 1.22984 1.32857 1.83205 1.23668 0.91444 0.81572 0.71703 1.90660 1.66562 1.36460 1.45537 1.20173 0.84366 0.91104 0.93040 1.22142 1.05271 0.92955 1.01017 1.22638 1.02075 0.86266 0.90718 1.86479 1.79560 1.37903 1.32678 1.46135 1.08196 1.30042 1.54607 1.20883 0.80083 0.86990 0.80896 1.90679 1.57476 1.42467 1.45935 1.21804 1.00754 0.96063 0.97529 1.17835 0.86520 0.94948 0.94535 0.90936 1.20681 1.10673 1.25605 0.95725 0.93106 1.24789 0.96287 0.94704 0.96594 1.69911 1.16762 1.31186 1.33976 0.86722 0.77423 0.78190 0.86310 1.20801 1.21611 1.20158 1.20726 0.94133 0.95292 0.91982 1.20954 1.00805 0.92899 0.98644 1.20975 0.99745 0.98447 0.95832 1.20794 1.02392 0.95696 0.98528 1.20982 1.00746 0.93329 0.99607 1.21084 0.98976 0.98840 0.94795 0.88004 0.92022 0.92039 0.87900 0.90825 0.91471 0.93171 0.88538 0.77288 0.76430 0.91570 0.90267 0.93188 0.86877 0.87705 0.87857 0.87690 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.34 -4.34 9.67 -39.37 -0.38 -4.72 16 3 C 0.47 6.75 6.41 36.01 0.23 6.99 16 4 O -0.51 -7.87 15.84 -18.75 -0.30 -8.17 16 5 C 0.20 2.98 0.80 -132.97 -0.11 2.87 16 6 C -0.16 -2.24 7.93 37.16 0.29 -1.95 16 7 C 0.06 0.92 5.72 37.16 0.21 1.13 16 8 O -0.56 -7.97 13.06 -35.23 -0.46 -8.43 16 9 N -0.73 -11.13 4.90 -48.68 -0.24 -11.37 16 10 C 0.52 9.82 6.99 -10.98 -0.08 9.74 16 11 O -0.49 -11.04 11.20 5.55 0.06 -10.98 16 12 C -0.12 -2.26 4.95 -27.88 -0.14 -2.40 16 13 C 0.08 1.85 1.67 -92.93 -0.16 1.70 16 14 H 0.07 1.91 6.97 -51.93 -0.36 1.55 16 15 C -0.49 -12.66 6.38 -34.44 -0.22 -12.88 16 16 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 17 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 18 N -0.88 -25.19 12.87 55.43 0.71 -24.48 16 19 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 24 C -0.11 -2.29 8.86 -39.58 -0.35 -2.64 16 25 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 26 C -0.16 -2.69 10.05 -39.58 -0.40 -3.09 16 27 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 28 C -0.12 -2.47 9.67 -39.58 -0.38 -2.85 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.10 1.69 6.16 -51.93 -0.32 1.37 16 33 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.68 6.18 -51.93 -0.32 1.36 16 37 H 0.38 3.90 9.12 45.56 0.42 4.31 16 38 H 0.40 5.30 7.91 -40.82 -0.32 4.98 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.39 7.78 -51.93 -0.40 0.99 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.11 2.18 7.76 -52.49 -0.41 1.77 16 43 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 44 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 46 H 0.11 2.37 7.95 -52.49 -0.42 1.95 16 LS Contribution 385.55 15.07 5.81 5.81 Total: -1.00 -32.56 385.55 -7.12 -39.68 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -5.90 Total: 12.41 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.41 Total: -6.35 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.47 Total: -35.85 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.08 Total: -32.30 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.56 -7.12 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909591342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.875 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds