Wall clock time and date at job start Tue Mar 31 2020 19:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99593 * 2 1 4 4 O 1.20822 * 120.00416 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99466 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.46944 * 205.00090 * 5 3 2 7 7 C 1.52998 * 109.47265 * 84.99884 * 5 3 2 8 8 O 1.42894 * 109.47143 * 299.99650 * 7 5 3 9 9 N 1.46499 * 109.47404 * 324.99699 * 5 3 2 10 10 C 1.34777 * 120.00345 * 180.02562 * 9 5 3 11 11 O 1.21284 * 119.99721 * 0.27469 * 10 9 5 12 12 C 1.50701 * 120.00227 * 179.97438 * 10 9 5 13 13 C 1.52996 * 109.47064 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47056 * 55.00268 * 13 12 10 15 15 C 1.50699 * 109.47078 * 295.00065 * 13 12 10 16 16 H 1.07995 * 120.00495 * 325.84479 * 15 13 12 17 17 C 1.37875 * 119.99736 * 145.84394 * 15 13 12 18 18 N 1.31510 * 120.00157 * 6.11650 * 17 15 13 19 19 Si 1.86810 * 119.99991 * 186.11459 * 17 15 13 20 20 H 1.48504 * 109.46634 * 90.00035 * 19 17 15 21 21 H 1.48497 * 109.47168 * 209.99908 * 19 17 15 22 22 H 1.48493 * 109.46929 * 330.00134 * 19 17 15 23 23 C 1.50701 * 109.47030 * 175.00201 * 13 12 10 24 24 C 1.38240 * 120.00055 * 63.45765 * 23 13 12 25 25 C 1.38233 * 119.99859 * 179.79009 * 24 23 13 26 26 C 1.38238 * 120.00054 * 0.43917 * 25 24 23 27 27 C 1.38240 * 119.99870 * 359.81806 * 26 25 24 28 28 C 1.38232 * 119.99857 * 243.73417 * 23 13 12 29 29 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47347 * 299.99920 * 1 2 3 31 31 H 1.08998 * 109.47087 * 60.00272 * 1 2 3 32 32 H 1.08994 * 109.47229 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.46688 * 299.99881 * 6 5 3 34 34 H 1.08995 * 109.46819 * 59.99577 * 6 5 3 35 35 H 1.09004 * 109.46747 * 59.99899 * 7 5 3 36 36 H 1.08998 * 109.46788 * 179.97438 * 7 5 3 37 37 H 0.96704 * 114.00337 * 179.97438 * 8 7 5 38 38 H 0.97003 * 119.99719 * 359.97438 * 9 5 3 39 39 H 1.09004 * 109.47064 * 300.00226 * 12 10 9 40 40 H 1.09005 * 109.46558 * 59.99566 * 12 10 9 41 41 H 0.97005 * 120.00256 * 180.02562 * 18 17 15 42 42 H 1.07994 * 119.99650 * 0.02562 * 24 23 13 43 43 H 1.08002 * 120.00068 * 180.27605 * 25 24 23 44 44 H 1.07997 * 120.00240 * 179.83410 * 26 25 24 45 45 H 1.07997 * 119.99646 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.00466 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0070 2.6073 0.6102 7 6 4.0828 1.1757 -1.4362 8 8 3.6714 -0.0687 -2.0054 9 7 4.1129 0.1708 0.7933 10 6 5.4467 0.0389 0.9356 11 8 6.1942 0.8373 0.4114 12 6 6.0089 -1.0965 1.7515 13 6 7.5368 -1.0165 1.7520 14 1 7.8490 -0.0329 2.1029 15 6 8.0518 -1.2376 0.3531 16 1 7.5371 -1.9162 -0.3110 17 6 9.1801 -0.5734 -0.0791 18 7 9.8754 0.1587 0.7635 19 14 9.7211 -0.7134 -1.8616 20 1 9.0833 0.3652 -2.6586 21 1 11.1980 -0.5814 -1.9425 22 1 9.3120 -2.0352 -2.4007 23 6 8.0950 -2.0765 2.6661 24 6 7.8908 -3.4135 2.3800 25 6 8.4065 -4.3859 3.2163 26 6 9.1188 -4.0212 4.3435 27 6 9.3185 -2.6842 4.6324 28 6 8.8064 -1.7119 3.7938 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 5.0954 2.6645 0.6102 33 1 3.6003 3.4288 0.0203 34 1 3.6390 2.6779 1.6337 35 1 3.6761 1.9972 -2.0259 36 1 5.1713 1.2332 -1.4357 37 1 3.9640 -0.1999 -2.9177 38 1 3.5149 -0.4650 1.2164 39 1 5.6406 -1.0256 2.7750 40 1 5.6952 -2.0459 1.3174 41 1 10.6691 0.6263 0.4594 42 1 7.3315 -3.6982 1.5012 43 1 8.2508 -5.4304 2.9904 44 1 9.5195 -4.7809 4.9983 45 1 9.8754 -2.3994 5.5129 46 1 8.9626 -0.6673 4.0196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909591342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:54 Heat of formation + Delta-G solvation = -163.798258 kcal Electronic energy + Delta-G solvation = -30008.610664 eV Core-core repulsion = 25862.761353 eV Total energy + Delta-G solvation = -4145.849311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.10864 -40.65714 -39.74514 -38.08808 -37.58000 -36.09695 -35.48590 -33.45388 -32.31481 -31.45775 -30.02667 -28.96287 -27.45416 -27.21043 -25.17457 -24.30946 -23.10427 -21.93185 -21.02591 -20.62710 -19.34010 -18.57669 -18.38627 -18.06540 -17.72653 -17.39942 -16.81305 -16.49960 -16.20972 -16.06566 -15.67120 -15.41981 -15.12890 -14.96094 -14.54279 -14.29345 -14.17943 -13.96240 -13.85832 -13.57055 -13.49046 -13.33906 -13.19992 -13.10376 -13.00178 -12.81842 -12.68531 -12.47366 -12.37698 -11.82615 -11.78371 -11.69963 -11.63706 -11.27425 -11.15487 -10.87644 -10.49190 -10.18626 -10.03385 -9.50258 -9.14620 -7.98751 -6.00395 0.81898 0.85264 0.89813 1.39791 1.42392 1.48147 1.52631 1.98275 2.21344 2.50611 3.00979 3.23137 3.41492 3.55455 3.78554 4.05103 4.16895 4.28852 4.30083 4.33589 4.35984 4.39783 4.45671 4.58268 4.59058 4.62827 4.68788 4.70335 4.74875 4.80405 4.97388 5.04291 5.07946 5.23104 5.27965 5.42068 5.45835 5.56974 5.70426 5.84423 5.87860 5.99505 6.22789 6.46743 6.50960 6.51578 6.72647 6.74458 7.07240 7.58094 7.62668 9.10803 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.003943 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.839570 B = 7099.843840 C = 8396.999479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.482 3.518 4 O -0.520 6.520 5 C 0.195 3.805 6 C -0.150 4.150 7 C 0.067 3.933 8 O -0.570 6.570 9 N -0.715 5.715 10 C 0.524 3.476 11 O -0.536 6.536 12 C -0.116 4.116 13 C 0.084 3.916 14 H 0.028 0.972 15 C -0.479 4.479 16 H 0.046 0.954 17 C 0.028 3.972 18 N -0.916 5.916 19 Si 0.931 3.069 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.266 1.266 23 C -0.044 4.044 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.149 4.149 27 C -0.129 4.129 28 C -0.143 4.143 29 H 0.132 0.868 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.413 0.587 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.252 0.748 42 H 0.115 0.885 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.130 0.870 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 -4.056 1.586 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.261 6.261 3 C 0.325 3.675 4 O -0.408 6.408 5 C 0.107 3.893 6 C -0.208 4.208 7 C -0.012 4.012 8 O -0.377 6.377 9 N -0.372 5.372 10 C 0.312 3.688 11 O -0.411 6.411 12 C -0.156 4.156 13 C 0.065 3.935 14 H 0.046 0.954 15 C -0.517 4.517 16 H 0.064 0.936 17 C -0.171 4.171 18 N -0.556 5.556 19 Si 0.759 3.241 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.190 1.190 23 C -0.045 4.045 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.167 4.167 27 C -0.147 4.147 28 C -0.161 4.161 29 H 0.150 0.850 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.246 0.754 38 H 0.250 0.750 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.061 0.939 42 H 0.133 0.867 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.651 -3.163 1.783 16.067 hybrid contribution 0.557 0.394 -1.567 1.709 sum -15.094 -2.769 0.216 15.348 Atomic orbital electron populations 1.23627 0.74384 1.05932 1.02676 1.86553 1.25159 1.31754 1.82652 1.23316 0.90840 0.81893 0.71455 1.90656 1.66698 1.37033 1.46433 1.20239 0.85326 0.90756 0.92989 1.22050 1.03627 0.93454 1.01705 1.22486 1.00286 0.87268 0.91196 1.86430 1.79537 1.37600 1.34162 1.45857 1.07163 1.30241 1.53970 1.20886 0.80919 0.86504 0.80461 1.90685 1.58809 1.43905 1.47666 1.21681 0.97953 0.96729 0.99220 1.17618 0.89225 0.93356 0.93286 0.95352 1.20932 1.09581 1.24078 0.97063 0.93566 1.25409 0.97038 0.95260 0.99392 1.70048 1.17354 1.33000 1.35216 0.85976 0.76756 0.78299 0.83057 1.21232 1.21853 1.19029 1.20581 0.95467 0.95752 0.92666 1.21042 1.01587 0.92499 0.99409 1.21362 0.98398 0.99650 0.95123 1.21249 1.01007 0.95912 0.98539 1.21281 1.00159 0.93506 0.99789 1.21107 1.00286 0.98817 0.95911 0.84965 0.91398 0.91952 0.90370 0.89622 0.90824 0.91252 0.91566 0.75401 0.75013 0.89127 0.88783 0.93893 0.86678 0.84318 0.84059 0.85182 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -8.06 9.67 -51.29 -0.50 -8.55 16 3 C 0.48 13.03 6.41 71.24 0.46 13.49 16 4 O -0.52 -15.42 15.84 21.98 0.35 -15.07 16 5 C 0.20 5.68 0.80 2.86 0.00 5.68 16 6 C -0.15 -4.37 7.93 71.98 0.57 -3.80 16 7 C 0.07 1.96 5.72 71.98 0.41 2.38 16 8 O -0.57 -15.56 13.06 -148.98 -1.95 -17.51 16 9 N -0.71 -21.39 4.90 -426.31 -2.09 -23.48 16 10 C 0.52 19.98 6.99 87.66 0.61 20.60 16 11 O -0.54 -25.08 11.20 -3.04 -0.03 -25.11 16 12 C -0.12 -4.33 4.95 29.85 0.15 -4.18 16 13 C 0.08 4.00 1.67 -12.29 -0.02 3.98 16 14 H 0.03 1.58 6.97 -2.39 -0.02 1.57 16 15 C -0.48 -25.37 6.38 25.60 0.16 -25.20 16 16 H 0.05 2.43 7.82 -2.91 -0.02 2.41 16 17 C 0.03 1.56 5.45 84.65 0.46 2.02 16 18 N -0.92 -54.88 12.87 21.45 0.28 -54.60 16 19 Si 0.93 45.41 29.54 68.60 2.03 47.43 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 21 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.04 -1.92 4.77 -19.87 -0.09 -2.02 16 24 C -0.13 -4.88 8.86 22.27 0.20 -4.69 16 25 C -0.13 -4.11 10.05 22.27 0.22 -3.88 16 26 C -0.15 -4.61 10.05 22.27 0.22 -4.38 16 27 C -0.13 -4.49 10.05 22.27 0.22 -4.27 16 28 C -0.14 -6.02 9.67 22.27 0.22 -5.81 16 29 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 32 H 0.08 2.71 6.16 -2.39 -0.01 2.69 16 33 H 0.08 2.24 7.87 -2.38 -0.02 2.22 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 2.39 6.18 -2.39 -0.01 2.38 16 37 H 0.40 7.69 9.12 -74.05 -0.68 7.02 16 38 H 0.41 10.30 7.91 -92.71 -0.73 9.57 16 39 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.09 3.22 7.78 -2.38 -0.02 3.20 16 41 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 42 H 0.12 4.27 7.76 -2.91 -0.02 4.25 16 43 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 44 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 45 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 46 H 0.09 4.22 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -72.78 385.55 2.68 -70.10 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -0.40 Total: 35.26 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.99 Total: -8.47 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -1.81 Total: -78.08 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -2.13 Total: -66.24 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -72.78 2.68 -70.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909591342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.702 kcal (2) G-P(sol) polarization free energy of solvation -72.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds