Wall clock time and date at job start Tue Mar 31 2020 19:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00048 * 2 1 4 4 O 1.20829 * 119.99796 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99897 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47040 * 204.99831 * 5 3 2 7 7 C 1.53001 * 109.46837 * 84.99854 * 5 3 2 8 8 O 1.42893 * 109.47454 * 300.00058 * 7 5 3 9 9 N 1.46495 * 109.47221 * 325.00075 * 5 3 2 10 10 C 1.34773 * 120.00117 * 179.72498 * 9 5 3 11 11 O 1.21284 * 119.99884 * 0.27784 * 10 9 5 12 12 C 1.50703 * 119.99952 * 180.27416 * 10 9 5 13 13 C 1.53007 * 109.46660 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47375 * 305.36508 * 13 12 10 15 15 C 1.50703 * 109.47299 * 65.37215 * 13 12 10 16 16 H 1.07999 * 120.00165 * 34.61605 * 15 13 12 17 17 C 1.37878 * 119.99676 * 214.61951 * 15 13 12 18 18 N 1.31520 * 119.99578 * 186.44364 * 17 15 13 19 19 Si 1.86791 * 120.00216 * 6.44229 * 17 15 13 20 20 H 1.48500 * 109.47123 * 85.01038 * 19 17 15 21 21 H 1.48496 * 109.47459 * 205.00973 * 19 17 15 22 22 H 1.48496 * 109.47289 * 325.01170 * 19 17 15 23 23 C 1.50701 * 109.46569 * 185.36791 * 13 12 10 24 24 C 1.38233 * 120.00270 * 296.35373 * 23 13 12 25 25 C 1.38236 * 119.99823 * 179.78935 * 24 23 13 26 26 C 1.38228 * 120.00195 * 0.44678 * 25 24 23 27 27 C 1.38231 * 120.00301 * 359.80795 * 26 25 24 28 28 C 1.38239 * 119.99892 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47253 * 299.99968 * 1 2 3 30 30 H 1.08998 * 109.47381 * 59.99899 * 1 2 3 31 31 H 1.09002 * 109.47472 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47235 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.47352 * 300.00565 * 6 5 3 34 34 H 1.09009 * 109.46870 * 60.00403 * 6 5 3 35 35 H 1.09000 * 109.47193 * 60.00550 * 7 5 3 36 36 H 1.08997 * 109.46794 * 179.97438 * 7 5 3 37 37 H 0.96697 * 113.99963 * 180.02562 * 8 7 5 38 38 H 0.97001 * 119.99696 * 359.97438 * 9 5 3 39 39 H 1.09000 * 109.47017 * 299.99840 * 12 10 9 40 40 H 1.08990 * 109.47137 * 60.00304 * 12 10 9 41 41 H 0.96995 * 119.99482 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.00043 * 0.02562 * 24 23 13 43 43 H 1.08006 * 119.99672 * 180.28324 * 25 24 23 44 44 H 1.08000 * 120.00015 * 179.83593 * 26 25 24 45 45 H 1.07997 * 120.00726 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.00502 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0075 2.6070 0.6091 7 6 4.0816 1.1762 -1.4378 8 8 3.6695 -0.0679 -2.0073 9 7 4.1135 0.1704 0.7912 10 6 5.4475 0.0350 0.9273 11 8 6.1948 0.8305 0.3984 12 6 6.0105 -1.1048 1.7366 13 6 7.5386 -1.0275 1.7320 14 1 7.8978 -0.9992 0.7033 15 6 7.9808 0.2197 2.4531 16 1 7.4187 0.5809 3.3017 17 6 9.1028 0.8998 2.0294 18 7 9.5620 1.9127 2.7315 19 14 9.9707 0.3827 0.4582 20 1 9.3137 1.0292 -0.7060 21 1 11.3943 0.8008 0.5184 22 1 9.8941 -1.0932 0.3132 23 6 8.1048 -2.2379 2.4286 24 6 7.8484 -2.4459 3.7709 25 6 8.3642 -3.5585 4.4089 26 6 9.1440 -4.4583 3.7067 27 6 9.4048 -4.2477 2.3657 28 6 8.8853 -3.1374 1.7266 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 5.0959 2.6642 0.6083 33 1 3.6003 3.4287 0.0200 34 1 3.6404 2.6771 1.6331 35 1 3.6745 1.9980 -2.0270 36 1 5.1700 1.2337 -1.4383 37 1 3.9621 -0.1989 -2.9196 38 1 3.5157 -0.4656 1.2144 39 1 5.6468 -1.0368 2.7619 40 1 5.6929 -2.0518 1.3005 41 1 10.3515 2.3909 2.4336 42 1 7.2419 -1.7411 4.3204 43 1 8.1601 -3.7233 5.4566 44 1 9.5492 -5.3262 4.2058 45 1 10.0137 -4.9509 1.8169 46 1 9.0894 -2.9725 0.6789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909591347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:57 Heat of formation + Delta-G solvation = -139.352979 kcal Electronic energy + Delta-G solvation = -30040.229224 eV Core-core repulsion = 25895.439941 eV Total energy + Delta-G solvation = -4144.789284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99695 -39.38190 -38.48746 -36.99500 -36.53270 -34.82680 -33.93939 -31.78170 -31.06689 -30.18892 -28.73066 -28.14552 -26.19516 -25.85477 -23.95411 -22.63264 -21.86947 -20.70199 -19.64790 -19.18357 -18.15113 -17.47608 -17.01797 -16.94034 -16.63308 -16.22497 -15.60696 -15.23239 -14.77747 -14.64033 -14.19738 -14.06417 -13.91740 -13.61342 -13.36727 -13.20559 -12.74567 -12.63785 -12.54282 -12.41825 -12.23084 -12.20151 -12.08186 -11.88906 -11.72417 -11.48489 -11.05095 -10.93031 -10.77966 -10.58963 -10.52996 -10.34806 -10.10294 -9.86626 -9.60939 -9.18763 -8.85291 -8.76438 -8.39561 -8.19313 -7.80643 -5.98881 -3.95489 1.96879 2.11304 2.16276 2.50561 3.36020 3.40770 3.44113 3.47575 3.50967 4.02968 4.53145 4.55975 4.58332 4.89091 4.92945 5.01042 5.17323 5.24192 5.32203 5.36831 5.53133 5.56884 5.60659 5.70126 5.75739 5.82273 5.92932 5.95927 6.01036 6.10583 6.16735 6.25705 6.34280 6.43823 6.59443 6.68940 6.70543 6.84221 7.01545 7.15766 7.28068 7.49835 7.58067 7.61424 7.72904 7.82998 7.94584 8.52593 8.90229 9.00838 9.66407 11.13899 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.003876 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.992209 B = 7221.617774 C = 8267.335801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.342 6.342 3 C 0.474 3.526 4 O -0.503 6.503 5 C 0.202 3.798 6 C -0.157 4.157 7 C 0.062 3.938 8 O -0.562 6.562 9 N -0.729 5.729 10 C 0.526 3.474 11 O -0.500 6.500 12 C -0.116 4.116 13 C 0.057 3.943 14 H 0.049 0.951 15 C -0.487 4.487 16 H 0.071 0.929 17 C 0.086 3.914 18 N -0.899 5.899 19 Si 0.874 3.126 20 H -0.273 1.273 21 H -0.298 1.298 22 H -0.262 1.262 23 C -0.038 4.038 24 C -0.101 4.101 25 C -0.128 4.128 26 C -0.149 4.149 27 C -0.127 4.127 28 C -0.136 4.136 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.379 0.621 38 H 0.402 0.598 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.261 0.739 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.822 -7.675 -5.650 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.258 6.258 3 C 0.315 3.685 4 O -0.389 6.389 5 C 0.114 3.886 6 C -0.215 4.215 7 C -0.017 4.017 8 O -0.367 6.367 9 N -0.387 5.387 10 C 0.314 3.686 11 O -0.372 6.372 12 C -0.157 4.157 13 C 0.038 3.962 14 H 0.068 0.932 15 C -0.524 4.524 16 H 0.089 0.911 17 C -0.116 4.116 18 N -0.536 5.536 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.224 1.224 22 H -0.186 1.186 23 C -0.039 4.039 24 C -0.119 4.119 25 C -0.146 4.146 26 C -0.168 4.168 27 C -0.145 4.145 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.226 0.774 38 H 0.237 0.763 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.618 -6.701 -5.434 16.121 hybrid contribution 0.320 -0.248 -1.109 1.180 sum -13.299 -6.949 -6.542 16.369 Atomic orbital electron populations 1.23279 0.76609 1.03720 1.02350 1.86565 1.23030 1.32892 1.83279 1.23647 0.91402 0.81597 0.71806 1.90670 1.66498 1.36444 1.45328 1.20193 0.84411 0.91229 0.92781 1.22161 1.05620 0.92574 1.01149 1.22652 1.01841 0.86290 0.90927 1.86497 1.79689 1.37999 1.32530 1.46053 1.08060 1.29983 1.54599 1.20802 0.80305 0.86934 0.80605 1.90661 1.57758 1.42695 1.46135 1.21678 0.99451 0.94831 0.99690 1.18119 0.89064 0.92216 0.96840 0.93239 1.20577 1.11143 1.05758 1.14889 0.91086 1.24874 0.96312 0.94345 0.96097 1.69902 1.23702 1.21617 1.38382 0.86927 0.77895 0.79651 0.85335 1.19903 1.22448 1.18638 1.20728 0.94998 0.93817 0.94327 1.20958 1.00208 0.96229 0.94551 1.21047 0.98930 0.95533 0.99053 1.20855 1.01272 0.99919 0.94723 1.20962 1.00593 0.97944 0.94967 1.21151 0.99687 0.94776 0.99786 0.91965 0.92038 0.88012 0.87563 0.90870 0.91265 0.92877 0.88817 0.77395 0.76284 0.89648 0.91054 0.92884 0.86284 0.87229 0.87471 0.87423 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.34 -4.23 9.67 -39.37 -0.38 -4.61 16 3 C 0.47 6.68 6.41 36.01 0.23 6.91 16 4 O -0.50 -7.87 15.84 -18.75 -0.30 -8.17 16 5 C 0.20 2.96 0.80 -132.97 -0.11 2.85 16 6 C -0.16 -2.40 7.94 37.16 0.29 -2.11 16 7 C 0.06 0.85 5.72 37.16 0.21 1.06 16 8 O -0.56 -7.10 13.06 -35.23 -0.46 -7.56 16 9 N -0.73 -10.89 4.90 -48.68 -0.24 -11.12 16 10 C 0.53 9.63 7.00 -10.99 -0.08 9.56 16 11 O -0.50 -10.97 11.21 5.55 0.06 -10.90 16 12 C -0.12 -2.08 4.94 -27.88 -0.14 -2.22 16 13 C 0.06 1.25 1.28 -92.92 -0.12 1.13 16 14 H 0.05 1.15 4.78 -51.93 -0.25 0.91 16 15 C -0.49 -12.84 6.94 -34.44 -0.24 -13.08 16 16 H 0.07 2.04 8.06 -52.49 -0.42 1.61 16 17 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 18 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 19 Si 0.87 22.13 27.04 -169.99 -4.60 17.53 16 20 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 22 H -0.26 -6.17 5.15 56.52 0.29 -5.88 16 23 C -0.04 -0.78 4.77 -104.62 -0.50 -1.28 16 24 C -0.10 -1.94 8.87 -39.58 -0.35 -2.29 16 25 C -0.13 -2.15 10.05 -39.59 -0.40 -2.54 16 26 C -0.15 -2.41 10.05 -39.59 -0.40 -2.81 16 27 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 28 C -0.14 -2.63 9.13 -39.58 -0.36 -2.99 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.11 1.90 6.18 -51.93 -0.32 1.58 16 33 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 34 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.48 6.16 -51.93 -0.32 1.16 16 37 H 0.38 3.15 9.12 45.56 0.42 3.57 16 38 H 0.40 5.16 7.91 -40.82 -0.32 4.83 16 39 H 0.09 1.43 7.80 -51.93 -0.41 1.02 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.12 2.24 7.77 -52.48 -0.41 1.83 16 43 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 44 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 46 H 0.11 2.12 6.95 -52.49 -0.36 1.76 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -34.09 378.92 -6.66 -40.75 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.86 Total: 11.60 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.38 Total: -6.62 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.53 Total: -37.72 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.08 Total: -31.24 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.60 Total: 17.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.09 -6.66 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909591347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.602 kcal (2) G-P(sol) polarization free energy of solvation -34.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds