Wall clock time and date at job start Tue Mar 31 2020 19:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00048 * 2 1 4 4 O 1.20829 * 119.99796 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99897 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47040 * 204.99831 * 5 3 2 7 7 C 1.53001 * 109.46837 * 84.99854 * 5 3 2 8 8 O 1.42893 * 109.47454 * 300.00058 * 7 5 3 9 9 N 1.46495 * 109.47221 * 325.00075 * 5 3 2 10 10 C 1.34773 * 120.00117 * 179.72498 * 9 5 3 11 11 O 1.21284 * 119.99884 * 0.27784 * 10 9 5 12 12 C 1.50703 * 119.99952 * 180.27416 * 10 9 5 13 13 C 1.53007 * 109.46660 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47375 * 305.36508 * 13 12 10 15 15 C 1.50703 * 109.47299 * 65.37215 * 13 12 10 16 16 H 1.07999 * 120.00165 * 34.61605 * 15 13 12 17 17 C 1.37878 * 119.99676 * 214.61951 * 15 13 12 18 18 N 1.31520 * 119.99578 * 186.44364 * 17 15 13 19 19 Si 1.86791 * 120.00216 * 6.44229 * 17 15 13 20 20 H 1.48500 * 109.47123 * 85.01038 * 19 17 15 21 21 H 1.48496 * 109.47459 * 205.00973 * 19 17 15 22 22 H 1.48496 * 109.47289 * 325.01170 * 19 17 15 23 23 C 1.50701 * 109.46569 * 185.36791 * 13 12 10 24 24 C 1.38233 * 120.00270 * 296.35373 * 23 13 12 25 25 C 1.38236 * 119.99823 * 179.78935 * 24 23 13 26 26 C 1.38228 * 120.00195 * 0.44678 * 25 24 23 27 27 C 1.38231 * 120.00301 * 359.80795 * 26 25 24 28 28 C 1.38239 * 119.99892 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47253 * 299.99968 * 1 2 3 30 30 H 1.08998 * 109.47381 * 59.99899 * 1 2 3 31 31 H 1.09002 * 109.47472 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47235 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.47352 * 300.00565 * 6 5 3 34 34 H 1.09009 * 109.46870 * 60.00403 * 6 5 3 35 35 H 1.09000 * 109.47193 * 60.00550 * 7 5 3 36 36 H 1.08997 * 109.46794 * 179.97438 * 7 5 3 37 37 H 0.96697 * 113.99963 * 180.02562 * 8 7 5 38 38 H 0.97001 * 119.99696 * 359.97438 * 9 5 3 39 39 H 1.09000 * 109.47017 * 299.99840 * 12 10 9 40 40 H 1.08990 * 109.47137 * 60.00304 * 12 10 9 41 41 H 0.96995 * 119.99482 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.00043 * 0.02562 * 24 23 13 43 43 H 1.08006 * 119.99672 * 180.28324 * 25 24 23 44 44 H 1.08000 * 120.00015 * 179.83593 * 26 25 24 45 45 H 1.07997 * 120.00726 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.00502 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0075 2.6070 0.6091 7 6 4.0816 1.1762 -1.4378 8 8 3.6695 -0.0679 -2.0073 9 7 4.1135 0.1704 0.7912 10 6 5.4475 0.0350 0.9273 11 8 6.1948 0.8305 0.3984 12 6 6.0105 -1.1048 1.7366 13 6 7.5386 -1.0275 1.7320 14 1 7.8978 -0.9992 0.7033 15 6 7.9808 0.2197 2.4531 16 1 7.4187 0.5809 3.3017 17 6 9.1028 0.8998 2.0294 18 7 9.5620 1.9127 2.7315 19 14 9.9707 0.3827 0.4582 20 1 9.3137 1.0292 -0.7060 21 1 11.3943 0.8008 0.5184 22 1 9.8941 -1.0932 0.3132 23 6 8.1048 -2.2379 2.4286 24 6 7.8484 -2.4459 3.7709 25 6 8.3642 -3.5585 4.4089 26 6 9.1440 -4.4583 3.7067 27 6 9.4048 -4.2477 2.3657 28 6 8.8853 -3.1374 1.7266 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 5.0959 2.6642 0.6083 33 1 3.6003 3.4287 0.0200 34 1 3.6404 2.6771 1.6331 35 1 3.6745 1.9980 -2.0270 36 1 5.1700 1.2337 -1.4383 37 1 3.9621 -0.1989 -2.9196 38 1 3.5157 -0.4656 1.2144 39 1 5.6468 -1.0368 2.7619 40 1 5.6929 -2.0518 1.3005 41 1 10.3515 2.3909 2.4336 42 1 7.2419 -1.7411 4.3204 43 1 8.1601 -3.7233 5.4566 44 1 9.5492 -5.3262 4.2058 45 1 10.0137 -4.9509 1.8169 46 1 9.0894 -2.9725 0.6789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909591347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:57 Heat of formation + Delta-G solvation = -164.140134 kcal Electronic energy + Delta-G solvation = -30041.304076 eV Core-core repulsion = 25895.439941 eV Total energy + Delta-G solvation = -4145.864135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13528 -40.74961 -39.86746 -38.12459 -37.59680 -36.15776 -35.55010 -33.72458 -32.43818 -31.56220 -30.15321 -28.97627 -27.72476 -27.27814 -25.13621 -24.20729 -23.26613 -21.98122 -20.97406 -20.64533 -19.35245 -18.96021 -18.56574 -18.10840 -17.76387 -17.47669 -16.88300 -16.49546 -16.37419 -16.02645 -15.67362 -15.41989 -15.19515 -14.98062 -14.67726 -14.45769 -14.27910 -14.12769 -13.89785 -13.86436 -13.56010 -13.35970 -13.30579 -13.18590 -13.03010 -12.79766 -12.69693 -12.62202 -12.05547 -11.87235 -11.83452 -11.75678 -11.69073 -11.42999 -11.18396 -11.03267 -10.55785 -10.31919 -10.08120 -9.58339 -9.26479 -8.17118 -6.12977 0.72069 0.76569 0.86122 1.36457 1.43067 1.45454 1.50334 1.92602 2.15327 2.46114 2.98535 3.11750 3.29921 3.53288 3.76323 3.98665 4.13788 4.17726 4.28642 4.31651 4.33183 4.35165 4.36027 4.49271 4.51732 4.55350 4.59986 4.67207 4.70776 4.72739 4.89244 4.90746 5.07925 5.11972 5.22436 5.24820 5.40405 5.42505 5.44864 5.73485 5.80448 5.86011 6.06849 6.37424 6.41148 6.49643 6.67574 6.75553 6.86213 7.49805 7.51343 8.99562 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.003876 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.992209 B = 7221.617774 C = 8267.335801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.345 6.345 3 C 0.482 3.518 4 O -0.521 6.521 5 C 0.196 3.804 6 C -0.152 4.152 7 C 0.069 3.931 8 O -0.568 6.568 9 N -0.713 5.713 10 C 0.524 3.476 11 O -0.542 6.542 12 C -0.112 4.112 13 C 0.059 3.941 14 H 0.035 0.965 15 C -0.461 4.461 16 H 0.036 0.964 17 C 0.027 3.973 18 N -0.953 5.953 19 Si 0.922 3.078 20 H -0.282 1.282 21 H -0.304 1.304 22 H -0.234 1.234 23 C -0.062 4.062 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.125 4.125 28 C -0.153 4.153 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.134 0.866 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.398 0.602 38 H 0.415 0.585 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.257 0.743 42 H 0.110 0.890 43 H 0.138 0.862 44 H 0.145 0.855 45 H 0.139 0.861 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.020 -11.197 -6.030 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.260 6.260 3 C 0.324 3.676 4 O -0.409 6.409 5 C 0.107 3.893 6 C -0.210 4.210 7 C -0.010 4.010 8 O -0.376 6.376 9 N -0.370 5.370 10 C 0.312 3.688 11 O -0.417 6.417 12 C -0.152 4.152 13 C 0.039 3.961 14 H 0.054 0.946 15 C -0.499 4.499 16 H 0.054 0.946 17 C -0.169 4.169 18 N -0.594 5.594 19 Si 0.749 3.251 20 H -0.209 1.209 21 H -0.232 1.232 22 H -0.157 1.157 23 C -0.062 4.062 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.159 4.159 27 C -0.143 4.143 28 C -0.171 4.171 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.248 0.752 38 H 0.252 0.748 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.066 0.934 42 H 0.128 0.872 43 H 0.155 0.845 44 H 0.162 0.838 45 H 0.156 0.844 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.871 -10.294 -5.829 19.002 hybrid contribution 0.537 0.709 -0.925 1.283 sum -14.334 -9.585 -6.754 18.519 Atomic orbital electron populations 1.23632 0.74373 1.05986 1.02639 1.86540 1.25143 1.31602 1.82673 1.23309 0.90820 0.81941 0.71483 1.90665 1.66704 1.37138 1.46376 1.20218 0.85383 0.90388 0.93281 1.22041 1.03567 0.93903 1.01468 1.22452 1.00368 0.87478 0.90734 1.86440 1.79668 1.37305 1.34217 1.45803 1.07137 1.30093 1.53985 1.20900 0.81099 0.86568 0.80205 1.90664 1.59024 1.44104 1.47949 1.21598 0.96783 0.96237 1.00593 1.17997 0.91694 0.91001 0.95369 0.94648 1.20769 1.09289 1.06870 1.12955 0.94616 1.25555 0.97775 0.94811 0.98785 1.70043 1.24899 1.23934 1.40545 0.86145 0.76230 0.80876 0.81862 1.20859 1.23155 1.15691 1.20506 0.96541 0.94167 0.95019 1.21015 1.01133 0.97360 0.94203 1.21388 0.98075 0.94469 1.00475 1.21319 0.99744 1.00449 0.94420 1.21328 0.99994 0.97366 0.95620 1.21265 1.00048 0.95819 0.99969 0.91630 0.91871 0.84798 0.90580 0.89568 0.91498 0.91158 0.91196 0.75175 0.74834 0.88663 0.87854 0.93437 0.87175 0.84450 0.83754 0.84362 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.34 -7.76 9.67 -51.31 -0.50 -8.25 16 3 C 0.48 12.97 6.41 71.24 0.46 13.42 16 4 O -0.52 -15.70 15.84 21.95 0.35 -15.35 16 5 C 0.20 5.65 0.80 2.86 0.00 5.66 16 6 C -0.15 -4.77 7.94 71.98 0.57 -4.20 16 7 C 0.07 1.86 5.72 71.98 0.41 2.27 16 8 O -0.57 -13.45 13.06 -148.98 -1.95 -15.39 16 9 N -0.71 -20.89 4.90 -426.33 -2.09 -22.98 16 10 C 0.52 19.34 7.00 87.66 0.61 19.96 16 11 O -0.54 -24.60 11.21 -3.04 -0.03 -24.63 16 12 C -0.11 -3.95 4.94 29.85 0.15 -3.80 16 13 C 0.06 2.58 1.28 -12.28 -0.02 2.57 16 14 H 0.04 1.65 4.78 -2.39 -0.01 1.64 16 15 C -0.46 -25.23 6.94 25.60 0.18 -25.05 16 16 H 0.04 2.16 8.06 -2.91 -0.02 2.13 16 17 C 0.03 1.59 5.47 84.65 0.46 2.06 16 18 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 19 Si 0.92 46.97 27.04 68.60 1.85 48.82 16 20 H -0.28 -14.65 7.11 99.48 0.71 -13.94 16 21 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 22 H -0.23 -10.68 5.15 99.48 0.51 -10.17 16 23 C -0.06 -2.47 4.77 -19.86 -0.09 -2.56 16 24 C -0.12 -4.40 8.87 22.27 0.20 -4.20 16 25 C -0.13 -3.84 10.05 22.27 0.22 -3.62 16 26 C -0.14 -3.93 10.05 22.27 0.22 -3.70 16 27 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 28 C -0.15 -5.58 9.13 22.27 0.20 -5.38 16 29 H 0.06 0.96 8.13 -2.38 -0.02 0.94 16 30 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 31 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 2.90 6.18 -2.39 -0.01 2.88 16 33 H 0.09 2.42 7.87 -2.39 -0.02 2.40 16 34 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 2.27 6.16 -2.39 -0.01 2.25 16 37 H 0.40 5.91 9.12 -74.06 -0.68 5.24 16 38 H 0.41 10.00 7.91 -92.71 -0.73 9.27 16 39 H 0.10 3.15 7.80 -2.39 -0.02 3.13 16 40 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.11 4.15 7.77 -2.91 -0.02 4.13 16 43 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 44 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 45 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 46 H 0.11 3.95 6.95 -2.91 -0.02 3.93 16 Total: -1.00 -77.21 378.92 2.35 -74.85 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.59 Total: 32.17 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 5.00 Total: -8.52 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -1.79 Total: -83.68 kcal Atomic # 8 Polarization: -61.50 SS G_CDS: -2.13 Total: -63.63 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.85 Total: 48.82 kcal Total: -77.21 2.35 -74.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909591347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.287 kcal (2) G-P(sol) polarization free energy of solvation -77.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds