Wall clock time and date at job start Tue Mar 31 2020 19:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34233 * 116.99922 * 2 1 4 4 O 1.20819 * 120.00044 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99465 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.46937 * 85.00404 * 5 3 2 7 7 C 1.52999 * 109.46489 * 205.00068 * 5 3 2 8 8 O 1.42903 * 109.47477 * 65.00330 * 7 5 3 9 9 N 1.46493 * 109.47257 * 324.99669 * 5 3 2 10 10 C 1.34780 * 120.00042 * 179.97438 * 9 5 3 11 11 O 1.21277 * 119.99851 * 0.02562 * 10 9 5 12 12 C 1.50701 * 120.00234 * 180.02562 * 10 9 5 13 13 C 1.52991 * 109.47373 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.47095 * 55.00154 * 13 12 10 15 15 C 1.50705 * 109.46997 * 295.00357 * 13 12 10 16 16 H 1.07997 * 120.00362 * 325.83884 * 15 13 12 17 17 C 1.37881 * 119.99908 * 145.84355 * 15 13 12 18 18 N 1.31515 * 120.00195 * 6.11653 * 17 15 13 19 19 Si 1.86799 * 120.00118 * 186.12203 * 17 15 13 20 20 H 1.48501 * 109.46718 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47544 * 119.99830 * 19 17 15 22 22 H 1.48501 * 109.47104 * 239.99952 * 19 17 15 23 23 C 1.50696 * 109.47318 * 175.00215 * 13 12 10 24 24 C 1.38237 * 119.99703 * 63.47120 * 23 13 12 25 25 C 1.38236 * 119.99575 * 179.81101 * 24 23 13 26 26 C 1.38239 * 120.00021 * 0.39565 * 25 24 23 27 27 C 1.38228 * 119.99934 * 359.85538 * 26 25 24 28 28 C 1.38235 * 120.00402 * 359.95649 * 27 26 25 29 29 H 1.09002 * 109.46845 * 59.99636 * 1 2 3 30 30 H 1.08998 * 109.47237 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47017 * 299.99593 * 1 2 3 32 32 H 1.09001 * 109.46689 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47172 * 299.99410 * 6 5 3 34 34 H 1.08995 * 109.47257 * 59.99777 * 6 5 3 35 35 H 1.09002 * 109.47547 * 305.00124 * 7 5 3 36 36 H 1.08998 * 109.46910 * 184.99810 * 7 5 3 37 37 H 0.96696 * 114.00501 * 179.97438 * 8 7 5 38 38 H 0.97002 * 120.00376 * 0.02562 * 9 5 3 39 39 H 1.08995 * 109.47051 * 300.00752 * 12 10 9 40 40 H 1.09003 * 109.46869 * 60.00545 * 12 10 9 41 41 H 0.96993 * 120.00333 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.00205 * 359.97438 * 24 23 13 43 43 H 1.07996 * 119.99922 * 180.23085 * 25 24 23 44 44 H 1.08001 * 119.99586 * 179.83809 * 26 25 24 45 45 H 1.08004 * 120.00043 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.99914 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0817 1.1763 -1.4378 7 6 4.0075 2.6069 0.6092 8 8 3.6272 2.6498 1.9860 9 7 4.1135 0.1704 0.7912 10 6 5.4474 0.0378 0.9315 11 8 6.1948 0.8332 0.4026 12 6 6.0103 -1.0986 1.7456 13 6 7.5381 -1.0186 1.7451 14 1 7.8506 -0.0354 2.0971 15 6 8.0522 -1.2378 0.3455 16 1 7.5371 -1.9156 -0.3191 17 6 9.1802 -0.5730 -0.0867 18 7 9.8762 0.1580 0.7564 19 14 9.7198 -0.7105 -1.8697 20 1 8.7740 -1.5864 -2.6069 21 1 9.7307 0.6391 -2.4892 22 1 11.0840 -1.2940 -1.9304 23 6 8.0971 -2.0797 2.6575 24 6 7.8929 -3.4163 2.3696 25 6 8.4090 -4.3897 3.2044 26 6 9.1222 -4.0265 4.3315 27 6 9.3219 -2.6900 4.6221 28 6 8.8092 -1.7165 3.7852 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 5.1702 1.2337 -1.4382 33 1 3.7674 0.2272 -1.8722 34 1 3.6746 1.9980 -2.0268 35 1 3.5291 3.4275 0.0744 36 1 5.0902 2.7027 0.5282 37 1 3.8761 3.4678 2.4376 38 1 3.5158 -0.4660 1.2140 39 1 5.6435 -1.0286 2.7695 40 1 5.6958 -2.0475 1.3110 41 1 10.6695 0.6260 0.4524 42 1 7.3325 -3.7000 1.4910 43 1 8.2527 -5.4340 2.9775 44 1 9.5232 -4.7871 4.9851 45 1 9.8788 -2.4062 5.5029 46 1 8.9649 -0.6723 4.0126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909591351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:03 Heat of formation + Delta-G solvation = -164.693247 kcal Electronic energy + Delta-G solvation = -29955.641630 eV Core-core repulsion = 25809.753509 eV Total energy + Delta-G solvation = -4145.888120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.11634 -40.64933 -39.74407 -38.22343 -37.37363 -36.14575 -35.50592 -33.45987 -32.37243 -31.45839 -30.03844 -28.88628 -27.50226 -27.22622 -25.16746 -24.31225 -23.10516 -21.93784 -21.04089 -20.62390 -19.35374 -18.50139 -18.44406 -18.23322 -17.56362 -17.34999 -16.83988 -16.51783 -16.28505 -15.93736 -15.59699 -15.42724 -15.24305 -14.97566 -14.60126 -14.39721 -14.17223 -13.93378 -13.78693 -13.59571 -13.50901 -13.39553 -13.16514 -13.14610 -12.97194 -12.84535 -12.67886 -12.45886 -12.36757 -11.86498 -11.78166 -11.70024 -11.63370 -11.25537 -11.12064 -10.87877 -10.49561 -10.18830 -10.02032 -9.50245 -9.14548 -7.98685 -6.00389 0.81901 0.86348 0.91086 1.39496 1.42965 1.48346 1.50254 2.00995 2.21049 2.50883 3.03710 3.23266 3.41778 3.54429 3.79584 4.04197 4.25880 4.28827 4.30161 4.33071 4.38227 4.40343 4.45796 4.54673 4.59227 4.60071 4.65901 4.70949 4.71839 4.80362 4.97252 5.04408 5.11909 5.20883 5.27719 5.42103 5.46431 5.56971 5.70692 5.84624 5.87830 5.99461 6.22759 6.46769 6.50411 6.51429 6.72238 6.74027 7.07617 7.59256 7.62973 9.11179 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.003883 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.793549 B = 7208.613489 C = 8374.615426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.481 3.519 4 O -0.514 6.514 5 C 0.196 3.804 6 C -0.161 4.161 7 C 0.076 3.924 8 O -0.578 6.578 9 N -0.714 5.714 10 C 0.525 3.475 11 O -0.536 6.536 12 C -0.115 4.115 13 C 0.085 3.915 14 H 0.026 0.974 15 C -0.478 4.478 16 H 0.049 0.951 17 C 0.027 3.973 18 N -0.917 5.917 19 Si 0.932 3.068 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.288 1.288 23 C -0.044 4.044 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.149 4.149 27 C -0.130 4.130 28 C -0.144 4.144 29 H 0.066 0.934 30 H 0.136 0.864 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.397 0.603 38 H 0.413 0.587 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.252 0.748 42 H 0.117 0.883 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.130 0.870 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.046 -3.468 2.241 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.324 3.676 4 O -0.402 6.402 5 C 0.107 3.893 6 C -0.219 4.219 7 C -0.003 4.003 8 O -0.386 6.386 9 N -0.372 5.372 10 C 0.313 3.687 11 O -0.411 6.411 12 C -0.156 4.156 13 C 0.066 3.934 14 H 0.044 0.956 15 C -0.516 4.516 16 H 0.067 0.933 17 C -0.171 4.171 18 N -0.557 5.557 19 Si 0.759 3.241 20 H -0.188 1.188 21 H -0.219 1.219 22 H -0.215 1.215 23 C -0.045 4.045 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.167 4.167 27 C -0.148 4.148 28 C -0.162 4.162 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.249 0.751 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.061 0.939 42 H 0.135 0.865 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.833 -3.076 1.709 16.219 hybrid contribution 0.544 0.940 -0.769 1.331 sum -15.289 -2.136 0.940 15.466 Atomic orbital electron populations 1.23647 0.74052 1.06108 1.02760 1.86496 1.25551 1.31895 1.83211 1.23333 0.90848 0.81960 0.71502 1.90644 1.66637 1.37061 1.45821 1.20209 0.85276 0.89072 0.94717 1.22171 1.04077 1.04244 0.91441 1.22428 0.99951 0.94818 0.83138 1.86350 1.83738 1.45542 1.22955 1.45833 1.07116 1.29882 1.54326 1.20862 0.80927 0.86558 0.80361 1.90681 1.58856 1.44151 1.47388 1.21671 0.97931 0.96825 0.99124 1.17613 0.89223 0.93255 0.93351 0.95573 1.20986 1.09595 1.24064 0.96987 0.93266 1.25417 0.97067 0.95240 0.99402 1.70060 1.17348 1.33091 1.35215 0.85918 0.77854 0.77267 0.83016 1.18841 1.21850 1.21459 1.20587 0.95440 0.95823 0.92647 1.21054 1.01577 0.92407 0.99470 1.21370 0.98353 0.99683 0.95095 1.21249 1.01027 0.95877 0.98578 1.21276 1.00188 0.93532 0.99781 1.21104 1.00352 0.98755 0.95993 0.91527 0.84629 0.91826 0.90269 0.89895 0.89517 0.91158 0.91700 0.75338 0.75065 0.89561 0.88454 0.93920 0.86456 0.84230 0.84056 0.85235 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.83 9.78 -51.44 -0.50 -8.33 16 3 C 0.48 12.93 6.51 71.24 0.46 13.39 16 4 O -0.51 -15.50 15.73 21.99 0.35 -15.15 16 5 C 0.20 5.68 0.79 2.86 0.00 5.68 16 6 C -0.16 -4.55 8.38 71.98 0.60 -3.95 16 7 C 0.08 2.27 5.28 71.98 0.38 2.65 16 8 O -0.58 -16.64 13.17 -148.98 -1.96 -18.60 16 9 N -0.71 -21.51 4.80 -426.34 -2.05 -23.56 16 10 C 0.52 20.12 7.00 87.66 0.61 20.74 16 11 O -0.54 -25.15 11.25 -3.02 -0.03 -25.18 16 12 C -0.12 -4.34 4.95 29.85 0.15 -4.19 16 13 C 0.08 4.04 1.67 -12.29 -0.02 4.02 16 14 H 0.03 1.47 6.98 -2.38 -0.02 1.46 16 15 C -0.48 -25.28 6.37 25.60 0.16 -25.12 16 16 H 0.05 2.56 7.82 -2.91 -0.02 2.54 16 17 C 0.03 1.54 5.45 84.66 0.46 2.00 16 18 N -0.92 -55.08 12.87 21.45 0.28 -54.80 16 19 Si 0.93 45.49 29.54 68.60 2.03 47.52 16 20 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 23 C -0.04 -1.94 4.77 -19.87 -0.09 -2.04 16 24 C -0.13 -4.85 8.86 22.27 0.20 -4.66 16 25 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 26 C -0.15 -4.63 10.05 22.27 0.22 -4.41 16 27 C -0.13 -4.55 10.05 22.27 0.22 -4.32 16 28 C -0.14 -6.11 9.67 22.27 0.22 -5.90 16 29 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 30 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 32 H 0.08 2.78 6.17 -2.39 -0.01 2.76 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 1.90 7.69 -2.39 -0.02 1.89 16 36 H 0.06 2.28 6.32 -2.39 -0.02 2.27 16 37 H 0.40 8.13 9.12 -74.06 -0.68 7.45 16 38 H 0.41 10.42 7.91 -92.71 -0.73 9.69 16 39 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.10 3.25 7.78 -2.39 -0.02 3.24 16 41 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.12 4.28 7.76 -2.91 -0.02 4.26 16 43 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 44 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 45 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 46 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -73.57 385.68 2.70 -70.87 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.40 Total: 35.61 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 5.00 Total: -8.38 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -1.77 Total: -78.36 kcal Atomic # 8 Polarization: -65.11 SS G_CDS: -2.15 Total: -67.27 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -73.57 2.70 -70.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909591351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.824 kcal (2) G-P(sol) polarization free energy of solvation -73.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds