Wall clock time and date at job start Tue Mar 31 2020 19:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47098 * 2 1 4 4 O 1.42900 * 109.47238 * 119.99701 * 2 1 3 5 5 C 1.42901 * 114.00256 * 150.00366 * 4 2 1 6 6 C 1.52996 * 109.47444 * 180.02562 * 5 4 2 7 7 C 1.50692 * 109.47075 * 179.97438 * 6 5 4 8 8 O 1.20821 * 120.00466 * 0.02562 * 7 6 5 9 9 O 1.34232 * 119.99945 * 179.97438 * 7 6 5 10 10 C 1.45200 * 117.00456 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47507 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99937 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00055 * 179.97438 * 11 10 9 14 14 C 1.39234 * 119.99787 * 184.28933 * 13 11 10 15 15 C 1.39480 * 119.83810 * 324.71162 * 14 13 11 16 16 C 1.36373 * 120.17151 * 180.29688 * 15 14 13 17 17 C 1.40869 * 119.82638 * 359.48095 * 16 15 14 18 18 C 1.41149 * 120.16615 * 180.24677 * 17 16 15 19 19 H 1.08002 * 120.00564 * 215.01718 * 18 17 16 20 20 C 1.39907 * 119.99949 * 35.01923 * 18 17 16 21 21 N 1.30873 * 119.99679 * 355.54737 * 20 18 17 22 22 Si 1.86795 * 120.00282 * 175.54331 * 20 18 17 23 23 H 1.48497 * 109.47333 * 59.99949 * 22 20 18 24 24 H 1.48503 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47361 * 299.99743 * 22 20 18 26 26 C 1.40878 * 119.67448 * 0.51928 * 17 16 15 27 27 C 1.36371 * 119.82161 * 359.73123 * 26 17 16 28 28 H 1.08996 * 109.46853 * 300.00236 * 1 2 3 29 29 H 1.08998 * 109.46719 * 60.00001 * 1 2 3 30 30 H 1.08995 * 109.46977 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47227 * 240.00057 * 2 1 3 32 32 H 1.09007 * 109.46846 * 299.99953 * 3 2 1 33 33 H 1.08994 * 109.47183 * 59.99419 * 3 2 1 34 34 H 1.08999 * 109.46882 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47191 * 59.99199 * 5 4 2 36 36 H 1.09008 * 109.46536 * 299.99980 * 5 4 2 37 37 H 1.09006 * 109.47157 * 59.99261 * 6 5 4 38 38 H 1.09001 * 109.46719 * 300.00014 * 6 5 4 39 39 H 1.09005 * 109.46837 * 60.00183 * 10 9 7 40 40 H 1.09001 * 109.46863 * 300.01059 * 10 9 7 41 41 H 0.96994 * 119.99721 * 4.29555 * 13 11 10 42 42 H 1.07997 * 119.91386 * 0.02562 * 15 14 13 43 43 H 1.08003 * 120.08733 * 179.70254 * 16 15 14 44 44 H 0.97006 * 120.00240 * 180.02562 * 21 20 18 45 45 H 1.07991 * 120.08734 * 179.71251 * 26 17 16 46 46 H 1.08005 * 119.91371 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2661 -1.3244 0.9887 6 6 3.6756 -2.0089 2.2943 7 6 5.0036 -2.6957 2.1062 8 8 5.5653 -2.6427 1.0378 9 8 5.5632 -3.3656 3.1261 10 6 6.8435 -4.0022 2.8733 11 6 7.3124 -4.7013 4.1231 12 8 6.6342 -4.6668 5.1280 13 7 8.4851 -5.3657 4.1240 14 6 8.8763 -6.0858 5.2496 15 6 8.5606 -5.6101 6.5222 16 6 8.9457 -6.3069 7.6294 17 6 9.6545 -7.5157 7.4852 18 6 10.0520 -8.2453 8.6262 19 1 10.9880 -8.7842 8.6236 20 6 9.2335 -8.2705 9.7606 21 7 8.1427 -7.5483 9.7965 22 14 9.6975 -9.3350 11.2237 23 1 11.0209 -8.9094 11.7457 24 1 8.6735 -9.1860 12.2888 25 1 9.7665 -10.7565 10.7996 26 6 9.9697 -7.9898 6.1966 27 6 9.5824 -7.2793 5.0989 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 4.0200 -0.5873 0.7124 36 1 3.1809 -2.0706 0.1987 37 1 2.9214 -2.7461 2.5701 38 1 3.7605 -1.2630 3.0845 39 1 7.5738 -3.2468 2.5832 40 1 6.7348 -4.7300 2.0692 41 1 9.0565 -5.3420 3.3406 42 1 8.0137 -4.6852 6.6311 43 1 8.7047 -5.9347 8.6143 44 1 7.5753 -7.5654 10.5831 45 1 10.5169 -8.9133 6.0784 46 1 9.8236 -7.6412 4.1103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914953845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:31 Heat of formation + Delta-G solvation = -151.977128 kcal Electronic energy + Delta-G solvation = -27051.312428 eV Core-core repulsion = 22905.975720 eV Total energy + Delta-G solvation = -4145.336708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87464 -39.61310 -38.79005 -37.39290 -36.54350 -34.49291 -33.83122 -32.97966 -31.50643 -29.86396 -29.43206 -28.18833 -27.66156 -25.06618 -24.27153 -21.78684 -21.64750 -21.14306 -20.81286 -19.72892 -18.20637 -17.51736 -17.30196 -17.18792 -16.96839 -16.12062 -16.04613 -15.74566 -15.29433 -15.15533 -14.84829 -14.13572 -14.00496 -13.82833 -13.52283 -13.18721 -13.02942 -12.84135 -12.67223 -12.62607 -12.57354 -12.24836 -12.11736 -11.87585 -11.76597 -11.60564 -11.49881 -11.16997 -11.10283 -11.01469 -10.91814 -10.84865 -10.52894 -9.98592 -9.98429 -9.92742 -9.52848 -9.05481 -8.80550 -7.56063 -6.94196 -6.61437 -4.35966 1.89983 2.03847 2.48277 2.95913 3.06150 3.09650 3.11722 3.21067 3.32078 3.73654 3.97543 4.30983 4.46823 4.54055 4.64352 4.67516 4.70286 4.77245 4.87196 4.95310 4.98714 5.03445 5.16416 5.23649 5.33832 5.39547 5.40139 5.47410 5.63105 5.74498 5.78756 6.08592 6.11934 6.34813 6.70697 6.79083 6.92563 7.01264 7.16202 7.25482 7.42190 7.59859 7.62850 7.91010 8.06404 8.11147 8.29739 8.60685 8.66129 8.90848 8.97455 10.29424 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025447 B = 0.001624 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.063663 B =17235.873924 C =18071.130507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.177 4.177 4 O -0.383 6.383 5 C 0.075 3.925 6 C -0.113 4.113 7 C 0.470 3.530 8 O -0.514 6.514 9 O -0.326 6.326 10 C 0.052 3.948 11 C 0.497 3.503 12 O -0.504 6.504 13 N -0.647 5.647 14 C 0.000 4.000 15 C -0.092 4.092 16 C -0.144 4.144 17 C 0.102 3.898 18 C -0.463 4.463 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.806 5.806 22 Si 0.916 3.084 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.204 4.204 27 C -0.110 4.110 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.397 0.603 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.280 0.720 45 H 0.098 0.902 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.671 13.126 -17.866 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.234 4.234 4 O -0.302 6.302 5 C -0.002 4.002 6 C -0.151 4.151 7 C 0.313 3.687 8 O -0.402 6.402 9 O -0.240 6.240 10 C -0.025 4.025 11 C 0.282 3.718 12 O -0.378 6.378 13 N -0.292 5.292 14 C -0.092 4.092 15 C -0.112 4.112 16 C -0.164 4.164 17 C 0.099 3.901 18 C -0.493 4.493 19 H 0.094 0.906 20 C -0.147 4.147 21 N -0.433 5.433 22 Si 0.741 3.259 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.224 4.224 27 C -0.130 4.130 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.230 0.770 42 H 0.126 0.874 43 H 0.149 0.851 44 H 0.091 0.909 45 H 0.116 0.884 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.306 13.205 -17.114 23.948 hybrid contribution 0.660 -0.586 -0.166 0.898 sum -9.646 12.619 -17.280 23.471 Atomic orbital electron populations 1.21872 0.93395 1.02866 1.02633 1.22100 0.95065 0.92446 0.87907 1.22318 1.01705 0.96691 1.02720 1.87862 1.36187 1.70108 1.36090 1.22170 0.86054 0.96184 0.95766 1.21112 0.91873 1.01573 1.00535 1.23453 0.87317 0.76157 0.81767 1.90678 1.63595 1.58690 1.27287 1.86568 1.34946 1.62133 1.40387 1.22750 0.84011 0.98138 0.97641 1.19928 0.81865 0.80917 0.89115 1.90773 1.54655 1.58879 1.33468 1.42765 1.19221 1.49941 1.17242 1.17235 1.10758 0.95892 0.85267 1.20646 0.99564 0.99825 0.91161 1.21303 1.02459 0.94831 0.97854 1.17741 0.90012 0.90514 0.91816 1.19464 1.05639 1.27238 0.96973 0.90605 1.25907 0.94262 0.95172 0.99334 1.69778 1.10965 1.33256 1.29254 0.86241 0.79032 0.80690 0.79917 1.19035 1.20394 1.19118 1.20692 1.08935 1.00357 0.92452 1.20069 1.01904 0.93574 0.97447 0.91650 0.91179 0.91876 0.92025 0.91572 0.91618 0.92368 0.92214 0.92178 0.86395 0.86411 0.88301 0.88204 0.76956 0.87426 0.85132 0.90927 0.88432 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.56 37.16 0.36 -0.50 16 2 C 0.08 0.56 3.34 -26.73 -0.09 0.47 16 3 C -0.18 -1.06 9.53 37.16 0.35 -0.70 16 4 O -0.38 -3.42 9.99 -35.23 -0.35 -3.77 16 5 C 0.08 0.64 5.04 37.16 0.19 0.82 16 6 C -0.11 -0.99 6.18 -27.89 -0.17 -1.16 16 7 C 0.47 5.45 7.96 36.00 0.29 5.74 16 8 O -0.51 -6.70 15.73 -18.75 -0.29 -6.99 16 9 O -0.33 -4.52 9.75 -45.91 -0.45 -4.97 16 10 C 0.05 0.66 5.95 36.00 0.21 0.88 16 11 C 0.50 8.63 7.74 -10.99 -0.09 8.54 16 12 O -0.50 -11.23 13.92 -14.11 -0.20 -11.43 16 13 N -0.65 -10.90 5.30 -9.74 -0.05 -10.95 16 14 C 0.00 0.01 6.31 -83.57 -0.53 -0.52 16 15 C -0.09 -2.27 8.61 -39.79 -0.34 -2.61 16 16 C -0.14 -3.85 8.61 -39.26 -0.34 -4.19 16 17 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 18 C -0.46 -12.24 9.02 -37.85 -0.34 -12.59 16 19 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 20 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 21 N -0.81 -21.42 10.61 55.55 0.59 -20.83 16 22 Si 0.92 19.00 29.56 -169.99 -5.03 13.98 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 C -0.20 -4.86 9.74 -39.26 -0.38 -5.25 16 27 C -0.11 -2.34 9.90 -39.79 -0.39 -2.74 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 7.79 -51.93 -0.40 -0.03 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 35 H 0.06 0.50 7.83 -51.93 -0.41 0.09 16 36 H 0.06 0.50 8.04 -51.92 -0.42 0.08 16 37 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.03 8.13 -51.93 -0.42 0.61 16 40 H 0.10 1.07 8.13 -51.93 -0.42 0.65 16 41 H 0.40 4.93 8.82 -40.82 -0.36 4.57 16 42 H 0.11 2.67 6.22 -52.49 -0.33 2.35 16 43 H 0.13 3.64 6.15 -52.48 -0.32 3.32 16 44 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 45 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 46 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -32.56 392.89 -8.66 -41.23 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.84 Total: 7.84 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.96 Total: -10.02 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.54 Total: -31.79 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -1.29 Total: -27.16 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.56 -8.66 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914953845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.751 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds