Wall clock time and date at job start Tue Mar 31 2020 19:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47098 * 2 1 4 4 O 1.42900 * 109.47238 * 119.99701 * 2 1 3 5 5 C 1.42901 * 114.00256 * 150.00366 * 4 2 1 6 6 C 1.52996 * 109.47444 * 180.02562 * 5 4 2 7 7 C 1.50692 * 109.47075 * 179.97438 * 6 5 4 8 8 O 1.20821 * 120.00466 * 0.02562 * 7 6 5 9 9 O 1.34232 * 119.99945 * 179.97438 * 7 6 5 10 10 C 1.45200 * 117.00456 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47507 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99937 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00055 * 179.97438 * 11 10 9 14 14 C 1.39234 * 119.99787 * 184.28933 * 13 11 10 15 15 C 1.39480 * 119.83810 * 324.71162 * 14 13 11 16 16 C 1.36373 * 120.17151 * 180.29688 * 15 14 13 17 17 C 1.40869 * 119.82638 * 359.48095 * 16 15 14 18 18 C 1.41149 * 120.16615 * 180.24677 * 17 16 15 19 19 H 1.08002 * 120.00564 * 215.01718 * 18 17 16 20 20 C 1.39907 * 119.99949 * 35.01923 * 18 17 16 21 21 N 1.30873 * 119.99679 * 355.54737 * 20 18 17 22 22 Si 1.86795 * 120.00282 * 175.54331 * 20 18 17 23 23 H 1.48497 * 109.47333 * 59.99949 * 22 20 18 24 24 H 1.48503 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47361 * 299.99743 * 22 20 18 26 26 C 1.40878 * 119.67448 * 0.51928 * 17 16 15 27 27 C 1.36371 * 119.82161 * 359.73123 * 26 17 16 28 28 H 1.08996 * 109.46853 * 300.00236 * 1 2 3 29 29 H 1.08998 * 109.46719 * 60.00001 * 1 2 3 30 30 H 1.08995 * 109.46977 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47227 * 240.00057 * 2 1 3 32 32 H 1.09007 * 109.46846 * 299.99953 * 3 2 1 33 33 H 1.08994 * 109.47183 * 59.99419 * 3 2 1 34 34 H 1.08999 * 109.46882 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47191 * 59.99199 * 5 4 2 36 36 H 1.09008 * 109.46536 * 299.99980 * 5 4 2 37 37 H 1.09006 * 109.47157 * 59.99261 * 6 5 4 38 38 H 1.09001 * 109.46719 * 300.00014 * 6 5 4 39 39 H 1.09005 * 109.46837 * 60.00183 * 10 9 7 40 40 H 1.09001 * 109.46863 * 300.01059 * 10 9 7 41 41 H 0.96994 * 119.99721 * 4.29555 * 13 11 10 42 42 H 1.07997 * 119.91386 * 0.02562 * 15 14 13 43 43 H 1.08003 * 120.08733 * 179.70254 * 16 15 14 44 44 H 0.97006 * 120.00240 * 180.02562 * 21 20 18 45 45 H 1.07991 * 120.08734 * 179.71251 * 26 17 16 46 46 H 1.08005 * 119.91371 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2661 -1.3244 0.9887 6 6 3.6756 -2.0089 2.2943 7 6 5.0036 -2.6957 2.1062 8 8 5.5653 -2.6427 1.0378 9 8 5.5632 -3.3656 3.1261 10 6 6.8435 -4.0022 2.8733 11 6 7.3124 -4.7013 4.1231 12 8 6.6342 -4.6668 5.1280 13 7 8.4851 -5.3657 4.1240 14 6 8.8763 -6.0858 5.2496 15 6 8.5606 -5.6101 6.5222 16 6 8.9457 -6.3069 7.6294 17 6 9.6545 -7.5157 7.4852 18 6 10.0520 -8.2453 8.6262 19 1 10.9880 -8.7842 8.6236 20 6 9.2335 -8.2705 9.7606 21 7 8.1427 -7.5483 9.7965 22 14 9.6975 -9.3350 11.2237 23 1 11.0209 -8.9094 11.7457 24 1 8.6735 -9.1860 12.2888 25 1 9.7665 -10.7565 10.7996 26 6 9.9697 -7.9898 6.1966 27 6 9.5824 -7.2793 5.0989 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 4.0200 -0.5873 0.7124 36 1 3.1809 -2.0706 0.1987 37 1 2.9214 -2.7461 2.5701 38 1 3.7605 -1.2630 3.0845 39 1 7.5738 -3.2468 2.5832 40 1 6.7348 -4.7300 2.0692 41 1 9.0565 -5.3420 3.3406 42 1 8.0137 -4.6852 6.6311 43 1 8.7047 -5.9347 8.6143 44 1 7.5753 -7.5654 10.5831 45 1 10.5169 -8.9133 6.0784 46 1 9.8236 -7.6412 4.1103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914953845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:30 Heat of formation + Delta-G solvation = -170.913152 kcal Electronic energy + Delta-G solvation = -27052.133556 eV Core-core repulsion = 22905.975720 eV Total energy + Delta-G solvation = -4146.157836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.90290 -41.06334 -39.44749 -39.06083 -37.63608 -36.20189 -34.75841 -34.41900 -32.23224 -31.54546 -31.18420 -29.59646 -28.11524 -26.68938 -25.23312 -23.35488 -22.86100 -22.30545 -21.75565 -21.31589 -19.24254 -19.08526 -18.86493 -18.10430 -17.78625 -17.60381 -17.13112 -16.77131 -16.67587 -16.05505 -15.86207 -15.75183 -15.17809 -15.04930 -14.70478 -14.48269 -14.18670 -13.97169 -13.84329 -13.75836 -13.56929 -13.34754 -13.30697 -13.10160 -12.83992 -12.81316 -12.69436 -12.45130 -12.31977 -12.16873 -11.94669 -11.81274 -11.77254 -11.71419 -11.61427 -11.23271 -10.82092 -10.58288 -10.53194 -9.46175 -8.78094 -8.49932 -6.33677 0.75656 1.00371 1.10643 1.13134 1.39401 1.42959 1.52088 1.67998 2.23283 2.27800 2.80392 2.84778 3.53042 3.58518 3.69659 3.88156 3.91850 4.01204 4.03970 4.11631 4.15912 4.29896 4.38191 4.43662 4.47809 4.63782 4.70624 4.76664 4.91454 4.92081 4.96813 4.97378 5.10628 5.14325 5.19839 5.29684 5.33207 5.33919 5.39672 5.70502 5.84563 6.05444 6.13635 6.21214 6.34084 6.49324 6.63203 6.70442 6.95498 7.00840 7.28242 8.42781 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025447 B = 0.001624 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.063663 B =17235.873924 C =18071.130507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 C -0.175 4.175 4 O -0.398 6.398 5 C 0.079 3.921 6 C -0.110 4.110 7 C 0.475 3.525 8 O -0.527 6.527 9 O -0.349 6.349 10 C 0.061 3.939 11 C 0.497 3.503 12 O -0.559 6.559 13 N -0.635 5.635 14 C 0.016 3.984 15 C -0.108 4.108 16 C -0.169 4.169 17 C 0.067 3.933 18 C -0.496 4.496 19 H 0.081 0.919 20 C 0.022 3.978 21 N -0.846 5.846 22 Si 0.991 3.009 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.210 4.210 27 C -0.103 4.103 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.423 0.577 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.282 0.718 45 H 0.114 0.886 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 12.961 -20.367 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.318 6.318 5 C 0.002 3.998 6 C -0.147 4.147 7 C 0.320 3.680 8 O -0.417 6.417 9 O -0.264 6.264 10 C -0.016 4.016 11 C 0.284 3.716 12 O -0.437 6.437 13 N -0.282 5.282 14 C -0.077 4.077 15 C -0.128 4.128 16 C -0.189 4.189 17 C 0.064 3.936 18 C -0.527 4.527 19 H 0.099 0.901 20 C -0.189 4.189 21 N -0.474 5.474 22 Si 0.811 3.189 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.184 1.184 26 C -0.230 4.230 27 C -0.122 4.122 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.262 0.738 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.093 0.907 45 H 0.132 0.868 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.062 13.059 -19.685 25.677 hybrid contribution 0.544 -0.419 0.417 0.803 sum -9.518 12.641 -19.268 24.933 Atomic orbital electron populations 1.21886 0.92606 1.02837 1.03269 1.22323 0.95766 0.92778 0.87519 1.22305 1.01396 0.96278 1.03244 1.87842 1.36264 1.70395 1.37333 1.22114 0.86050 0.96137 0.95459 1.21170 0.90592 1.01827 1.01115 1.23832 0.87675 0.75493 0.81010 1.90669 1.64117 1.59234 1.27634 1.86564 1.35483 1.62691 1.41677 1.22740 0.84543 0.99304 0.95017 1.20757 0.81082 0.79808 0.89917 1.90765 1.56223 1.60672 1.35995 1.42619 1.19821 1.49051 1.16693 1.17298 1.08761 0.95973 0.85702 1.20672 1.00073 0.99631 0.92414 1.21165 1.04354 0.95963 0.97453 1.18085 0.91173 0.90784 0.93516 1.19764 1.06432 1.28380 0.98131 0.90108 1.26857 0.93814 0.96182 1.02061 1.69905 1.12248 1.34994 1.30253 0.85120 0.78943 0.78760 0.76029 1.18125 1.19860 1.18352 1.20972 1.08689 1.01202 0.92106 1.20452 1.00246 0.92574 0.98964 0.92206 0.89363 0.92230 0.91315 0.89963 0.92190 0.92821 0.92258 0.92113 0.85463 0.85494 0.85275 0.85342 0.73811 0.88496 0.87794 0.90706 0.86788 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.56 71.98 0.69 -0.80 16 2 C 0.07 0.91 3.34 30.60 0.10 1.01 16 3 C -0.17 -1.86 9.53 71.98 0.69 -1.17 16 4 O -0.40 -6.68 9.99 -148.98 -1.49 -8.17 16 5 C 0.08 1.23 5.04 71.98 0.36 1.60 16 6 C -0.11 -1.77 6.18 29.84 0.18 -1.58 16 7 C 0.48 10.16 7.96 71.23 0.57 10.72 16 8 O -0.53 -12.51 15.73 21.98 0.35 -12.16 16 9 O -0.35 -9.09 9.75 -45.09 -0.44 -9.53 16 10 C 0.06 1.37 5.95 71.23 0.42 1.79 16 11 C 0.50 16.46 7.74 87.65 0.68 17.13 16 12 O -0.56 -25.14 13.92 15.76 0.22 -24.92 16 13 N -0.63 -19.78 5.30 -303.11 -1.61 -21.38 16 14 C 0.02 0.67 6.31 38.57 0.24 0.91 16 15 C -0.11 -5.48 8.61 22.13 0.19 -5.29 16 16 C -0.17 -9.48 8.61 22.48 0.19 -9.29 16 17 C 0.07 3.65 5.55 -21.27 -0.12 3.54 16 18 C -0.50 -27.08 9.02 23.39 0.21 -26.87 16 19 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 20 C 0.02 1.17 5.42 85.24 0.46 1.64 16 21 N -0.85 -47.18 10.61 21.82 0.23 -46.95 16 22 Si 0.99 39.64 29.56 68.60 2.03 41.67 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 24 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 26 C -0.21 -9.84 9.74 22.48 0.22 -9.62 16 27 C -0.10 -4.13 9.90 22.13 0.22 -3.91 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.74 7.79 -2.39 -0.02 0.72 16 32 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.61 7.87 -2.39 -0.02 0.59 16 35 H 0.06 0.92 7.83 -2.39 -0.02 0.90 16 36 H 0.06 0.93 8.04 -2.38 -0.02 0.91 16 37 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.13 2.19 8.13 -2.38 -0.02 2.17 16 40 H 0.13 2.23 8.13 -2.39 -0.02 2.21 16 41 H 0.42 8.77 8.82 -92.71 -0.82 7.95 16 42 H 0.10 5.06 6.22 -2.91 -0.02 5.04 16 43 H 0.10 6.27 6.15 -2.91 -0.02 6.25 16 44 H 0.28 14.49 8.30 -92.70 -0.77 13.72 16 45 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 46 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -74.37 392.89 4.78 -69.59 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.18 Total: 32.05 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 5.31 Total: -20.19 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -1.38 Total: -68.34 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -1.36 Total: -54.78 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -74.37 4.78 -69.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914953845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.323 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds