Wall clock time and date at job start Tue Mar 31 2020 19:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.47051 * 2 1 4 4 O 1.20828 * 119.99670 * 0.02562 * 3 2 1 5 5 O 1.34224 * 120.00041 * 179.97438 * 3 2 1 6 6 C 1.45198 * 117.00211 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.46875 * 29.99891 * 6 5 3 8 8 C 1.53006 * 109.47240 * 270.00483 * 6 5 3 9 9 C 1.50693 * 109.47553 * 150.00269 * 6 5 3 10 10 O 1.21302 * 120.00026 * 13.85298 * 9 6 5 11 11 N 1.34779 * 120.00159 * 193.84990 * 9 6 5 12 12 C 1.46493 * 120.00228 * 355.79262 * 11 9 6 13 13 C 1.50702 * 109.47095 * 263.83461 * 12 11 9 14 14 H 1.07997 * 120.00116 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00004 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00231 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99732 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46927 * 90.00128 * 17 15 13 19 19 H 1.48505 * 109.47140 * 209.99822 * 17 15 13 20 20 H 1.48496 * 109.47662 * 329.99939 * 17 15 13 21 21 C 1.40125 * 119.99536 * 175.51518 * 11 9 6 22 22 C 1.38723 * 120.08853 * 90.00826 * 21 11 9 23 23 C 1.38200 * 119.98504 * 179.97438 * 22 21 11 24 24 C 1.38276 * 120.16238 * 0.02562 * 23 22 21 25 25 C 1.38238 * 120.18282 * 359.97438 * 24 23 22 26 26 C 1.38562 * 120.01408 * 359.72222 * 25 24 23 27 27 O 1.35966 * 120.08398 * 180.29702 * 26 25 24 28 28 C 1.42897 * 117.00322 * 0.27709 * 27 26 25 29 29 H 1.09001 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46742 * 299.99478 * 1 2 3 31 31 H 1.08993 * 109.47318 * 59.99722 * 1 2 3 32 32 H 1.08998 * 109.47206 * 240.00283 * 2 1 3 33 33 H 1.09001 * 109.47589 * 120.00164 * 2 1 3 34 34 H 1.09003 * 109.46866 * 292.59051 * 8 6 5 35 35 H 1.09003 * 109.46792 * 52.58813 * 8 6 5 36 36 H 1.08998 * 109.47368 * 172.58978 * 8 6 5 37 37 H 1.09004 * 109.46944 * 23.83102 * 12 11 9 38 38 H 1.08997 * 109.47205 * 143.82955 * 12 11 9 39 39 H 0.97000 * 119.99893 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.00701 * 0.02562 * 22 21 11 41 41 H 1.08000 * 119.91630 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.90951 * 179.97438 * 24 23 22 43 43 H 1.07994 * 119.99752 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47166 * 59.99875 * 28 27 26 45 45 H 1.08999 * 109.47247 * 180.02562 * 28 27 26 46 46 H 1.09008 * 109.46723 * 300.00117 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2470 2.3392 0.0005 5 8 3.3519 1.6662 0.0005 6 6 3.7636 3.0586 0.0011 7 1 3.0130 3.6591 0.5148 8 6 3.9086 3.5481 -1.4413 9 6 5.0858 3.1913 0.7119 10 8 5.7482 2.2034 0.9499 11 7 5.5322 4.4076 1.0831 12 6 4.7782 5.6084 0.7150 13 6 5.3615 6.2025 -0.5412 14 1 6.2089 5.7323 -1.0179 15 6 4.8128 7.3457 -1.0824 16 7 5.3221 7.8644 -2.1783 17 14 3.3457 8.1577 -0.2590 18 1 3.8237 9.1549 0.7321 19 1 2.5161 8.8385 -1.2855 20 1 2.5311 7.1254 0.4308 21 6 6.7146 4.5230 1.8262 22 6 7.9332 4.6592 1.1774 23 6 9.0980 4.7734 1.9124 24 6 9.0525 4.7519 3.2942 25 6 7.8419 4.6165 3.9477 26 6 6.6688 4.5077 3.2183 27 8 5.4767 4.3806 3.8597 28 6 5.5062 4.3726 5.2883 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.7475 3.0384 -1.9154 35 1 2.9934 3.3314 -1.9922 36 1 4.0883 4.6232 -1.4438 37 1 3.7352 5.3435 0.5412 38 1 4.8381 6.3371 1.5234 39 1 4.9357 8.6684 -2.5593 40 1 7.9716 4.6767 0.0983 41 1 10.0461 4.8789 1.4062 42 1 9.9653 4.8410 3.8646 43 1 7.8099 4.5996 5.0271 44 1 5.9340 5.3083 5.6481 45 1 4.4917 4.2652 5.6721 46 1 6.1156 3.5377 5.6345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916554356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:28 Heat of formation + Delta-G solvation = -121.910857 kcal Electronic energy + Delta-G solvation = -30331.884959 eV Core-core repulsion = 26187.852023 eV Total energy + Delta-G solvation = -4144.032937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65742 -40.11616 -38.77844 -37.08532 -36.26127 -35.19856 -33.08152 -32.68842 -31.56981 -29.95001 -29.48811 -27.85829 -27.04905 -25.42436 -24.06054 -22.63431 -22.13015 -21.79916 -20.39476 -19.14176 -17.89817 -17.66678 -17.04356 -16.56642 -16.40491 -16.16819 -15.89015 -15.65029 -15.36203 -14.64986 -14.54122 -14.25730 -14.03047 -13.77188 -13.44862 -13.29375 -13.00162 -12.63191 -12.54018 -12.42751 -12.25087 -12.00596 -11.96602 -11.80229 -11.63206 -11.49151 -11.31883 -11.08496 -10.97833 -10.92887 -10.91477 -10.75087 -10.41418 -10.29845 -10.24880 -9.65550 -9.17293 -8.75308 -8.53580 -8.04282 -7.86545 -6.27545 -4.28793 1.59122 1.73995 2.36771 2.64662 3.11598 3.17597 3.25668 3.28709 3.47530 3.75271 4.04651 4.23568 4.72690 4.94466 4.96536 4.99377 5.00503 5.04314 5.15455 5.20688 5.24944 5.32581 5.43049 5.46180 5.51896 5.52859 5.62424 5.68754 5.76166 5.89005 6.04428 6.07830 6.19793 6.29805 6.38590 6.48858 6.55894 6.69991 6.71555 6.82216 6.98557 7.01722 7.26588 7.37929 7.66797 7.90532 7.96268 8.31006 8.72084 8.80263 9.30521 10.83743 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008123 B = 0.005362 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3446.214645 B = 5220.322424 C = 7139.108835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.455 3.545 4 O -0.509 6.509 5 O -0.335 6.335 6 C 0.081 3.919 7 H 0.106 0.894 8 C -0.177 4.177 9 C 0.532 3.468 10 O -0.537 6.537 11 N -0.541 5.541 12 C 0.206 3.794 13 C -0.540 4.540 14 H 0.084 0.916 15 C 0.082 3.918 16 N -0.883 5.883 17 Si 0.863 3.137 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.261 1.261 21 C 0.135 3.865 22 C -0.054 4.054 23 C -0.153 4.153 24 C -0.086 4.086 25 C -0.210 4.210 26 C 0.127 3.873 27 O -0.309 6.309 28 C 0.028 3.972 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.130 0.870 37 H 0.040 0.960 38 H 0.032 0.968 39 H 0.268 0.732 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.053 0.947 45 H 0.096 0.904 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 -9.991 9.822 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C 0.298 3.702 4 O -0.397 6.397 5 O -0.250 6.250 6 C 0.023 3.977 7 H 0.124 0.876 8 C -0.234 4.234 9 C 0.319 3.681 10 O -0.414 6.414 11 N -0.270 5.270 12 C 0.086 3.914 13 C -0.578 4.578 14 H 0.102 0.898 15 C -0.123 4.123 16 N -0.520 5.520 17 Si 0.689 3.311 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.186 1.186 21 C 0.044 3.956 22 C -0.073 4.073 23 C -0.171 4.171 24 C -0.104 4.104 25 C -0.230 4.230 26 C 0.080 3.920 27 O -0.222 6.222 28 C -0.067 4.067 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.717 -10.067 9.716 14.096 hybrid contribution -0.643 0.911 0.570 1.253 sum -2.360 -9.156 10.285 13.971 Atomic orbital electron populations 1.21628 0.92503 1.02083 1.03649 1.21340 0.97683 0.90444 1.05851 1.23866 0.80875 0.93084 0.72357 1.90663 1.56646 1.46901 1.45523 1.86554 1.25265 1.30129 1.83093 1.22517 0.95415 0.79862 0.99915 0.87614 1.22506 1.02207 1.07153 0.91557 1.19939 0.86732 0.82930 0.78455 1.90653 1.58125 1.37111 1.55490 1.45132 1.22630 1.07045 1.52172 1.20055 0.91820 0.82439 0.97047 1.21270 1.17759 1.10763 1.08043 0.89780 1.24810 0.96664 0.96226 0.94572 1.69869 1.40788 1.21434 1.19911 0.87031 0.83379 0.80694 0.79958 1.19784 1.20639 1.18568 1.16755 0.87042 1.05473 0.86308 1.21320 0.90518 0.94602 1.00892 1.20940 0.98057 1.04354 0.93798 1.20865 0.96786 0.98226 0.94504 1.21000 0.92142 1.10238 0.99587 1.19308 0.84823 0.96557 0.91301 1.86157 1.27838 1.87925 1.20261 1.23013 1.03568 1.01027 0.79088 0.91402 0.91797 0.91692 0.87694 0.87764 0.91747 0.92142 0.85242 0.94210 0.94964 0.92189 0.84590 0.85729 0.86022 0.85621 0.92803 0.88601 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.20 37.15 0.34 -1.00 16 2 C -0.12 -1.23 6.53 -27.88 -0.18 -1.42 16 3 C 0.46 7.33 7.93 36.01 0.29 7.61 16 4 O -0.51 -9.43 15.20 -18.75 -0.29 -9.72 16 5 O -0.33 -6.26 9.45 -45.77 -0.43 -6.69 16 6 C 0.08 1.63 2.14 -27.88 -0.06 1.57 16 7 H 0.11 2.17 5.84 -51.93 -0.30 1.87 16 8 C -0.18 -3.51 9.27 37.16 0.34 -3.16 16 9 C 0.53 11.83 6.97 -10.99 -0.08 11.75 16 10 O -0.54 -12.97 16.54 -13.70 -0.23 -13.20 16 11 N -0.54 -11.89 2.25 -114.60 -0.26 -12.15 16 12 C 0.21 4.72 3.74 -5.20 -0.02 4.70 16 13 C -0.54 -13.74 7.57 -34.44 -0.26 -14.00 16 14 H 0.08 2.33 7.82 -52.49 -0.41 1.92 16 15 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 16 N -0.88 -24.79 13.96 55.43 0.77 -24.02 16 17 Si 0.86 19.88 27.47 -169.99 -4.67 15.22 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 21 C 0.14 2.80 4.48 -83.49 -0.37 2.43 16 22 C -0.05 -1.04 9.96 -39.42 -0.39 -1.43 16 23 C -0.15 -2.39 10.04 -39.58 -0.40 -2.78 16 24 C -0.09 -1.21 10.04 -39.57 -0.40 -1.60 16 25 C -0.21 -3.16 9.04 -39.46 -0.36 -3.52 16 26 C 0.13 2.34 6.70 -39.07 -0.26 2.08 16 27 O -0.31 -5.48 10.24 -19.63 -0.20 -5.68 16 28 C 0.03 0.34 9.81 101.05 0.99 1.33 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.13 2.86 4.51 -51.93 -0.23 2.62 16 37 H 0.04 0.90 4.55 -51.93 -0.24 0.66 16 38 H 0.03 0.75 7.53 -51.93 -0.39 0.36 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.14 2.70 7.82 -52.49 -0.41 2.29 16 41 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.13 1.49 6.30 -52.49 -0.33 1.16 16 44 H 0.05 0.56 7.68 -51.93 -0.40 0.16 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.55 7.65 -51.92 -0.40 0.15 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -32.66 383.91 -6.93 -39.59 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.50 Total: 6.25 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.91 Total: 4.62 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.52 Total: -36.17 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.15 Total: -35.29 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.67 Total: 15.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.66 -6.93 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916554356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.320 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds