Wall clock time and date at job start Tue Mar 31 2020 19:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47023 * 2 1 4 4 O 1.20828 * 119.99769 * 0.02562 * 3 2 1 5 5 O 1.34223 * 120.00108 * 179.97438 * 3 2 1 6 6 C 1.45200 * 117.00260 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.46920 * 329.99580 * 6 5 3 8 8 C 1.52993 * 109.47221 * 89.99984 * 6 5 3 9 9 C 1.50703 * 109.46786 * 210.00110 * 6 5 3 10 10 O 1.21293 * 120.00216 * 346.06776 * 9 6 5 11 11 N 1.34784 * 119.99438 * 166.07016 * 9 6 5 12 12 C 1.46501 * 119.99492 * 184.57730 * 11 9 6 13 13 C 1.50702 * 109.47196 * 269.99763 * 12 11 9 14 14 H 1.07996 * 119.99523 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99806 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99517 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00044 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47132 * 89.99897 * 17 15 13 19 19 H 1.48503 * 109.46904 * 209.99532 * 17 15 13 20 20 H 1.48499 * 109.47265 * 329.99510 * 17 15 13 21 21 C 1.40127 * 120.00435 * 4.57577 * 11 9 6 22 22 C 1.38719 * 120.08877 * 96.31507 * 21 11 9 23 23 C 1.38191 * 119.98661 * 180.22979 * 22 21 11 24 24 C 1.38280 * 120.15894 * 359.50258 * 23 22 21 25 25 C 1.38239 * 120.18187 * 0.50370 * 24 23 22 26 26 C 1.38550 * 120.01342 * 359.74703 * 25 24 23 27 27 O 1.35976 * 120.08169 * 180.02562 * 26 25 24 28 28 C 1.42901 * 116.99997 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47502 * 300.00138 * 1 2 3 30 30 H 1.09003 * 109.47214 * 60.00165 * 1 2 3 31 31 H 1.08999 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47218 * 239.99574 * 2 1 3 33 33 H 1.08999 * 109.46432 * 119.99381 * 2 1 3 34 34 H 1.09004 * 109.47242 * 174.15587 * 8 6 5 35 35 H 1.09002 * 109.47038 * 294.15876 * 8 6 5 36 36 H 1.08996 * 109.47587 * 54.15953 * 8 6 5 37 37 H 1.09000 * 109.47306 * 30.00050 * 12 11 9 38 38 H 1.09005 * 109.47035 * 149.99883 * 12 11 9 39 39 H 0.97004 * 120.00018 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.00609 * 359.96423 * 22 21 11 41 41 H 1.08000 * 119.92174 * 179.74673 * 23 22 21 42 42 H 1.08003 * 119.91076 * 180.25194 * 24 23 22 43 43 H 1.08007 * 119.99292 * 179.77435 * 25 24 23 44 44 H 1.08996 * 109.47500 * 300.00050 * 28 27 26 45 45 H 1.08998 * 109.46928 * 60.00702 * 28 27 26 46 46 H 1.09007 * 109.46968 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2471 2.3392 0.0005 5 8 3.3520 1.6661 0.0005 6 6 3.7637 3.0586 0.0011 7 1 3.0134 3.6594 -0.5129 8 6 3.9078 3.5472 1.4437 9 6 5.0863 3.1915 -0.7089 10 8 5.7495 2.2039 -0.9458 11 7 5.5323 4.4079 -1.0806 12 6 6.7678 4.5288 -1.8584 13 6 7.9403 4.6637 -0.9212 14 1 7.7809 4.6594 0.1469 15 6 9.2163 4.7916 -1.4275 16 7 10.2394 4.9098 -0.6096 17 14 9.4918 4.7984 -3.2750 18 1 9.4186 6.1925 -3.7813 19 1 10.8305 4.2314 -3.5779 20 1 8.4455 3.9766 -3.9346 21 6 4.8141 5.5569 -0.7232 22 6 5.1759 6.2806 0.4036 23 6 4.4632 7.4107 0.7569 24 6 3.3956 7.8286 -0.0162 25 6 3.0291 7.1124 -1.1404 26 6 3.7353 5.9754 -1.4985 27 8 3.3763 5.2702 -2.6043 28 6 2.2601 5.7585 -3.3511 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 4.3158 4.5580 1.4459 35 1 2.9303 3.5488 1.9261 36 1 4.5799 2.8830 1.9869 37 1 6.8968 3.6400 -2.4761 38 1 6.7102 5.4101 -2.4974 39 1 11.1371 5.0002 -0.9657 40 1 6.0116 5.9585 1.0071 41 1 4.7432 7.9710 1.6366 42 1 2.8440 8.7147 0.2613 43 1 2.1925 7.4396 -1.7400 44 1 1.3758 5.7745 -2.7142 45 1 2.4724 6.7678 -3.7036 46 1 2.0806 5.1053 -4.2051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916554357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:31 Heat of formation + Delta-G solvation = -119.787867 kcal Electronic energy + Delta-G solvation = -30613.457600 eV Core-core repulsion = 26469.516724 eV Total energy + Delta-G solvation = -4143.940877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86818 -40.21988 -38.79347 -37.27328 -36.47760 -34.91461 -33.21096 -32.69535 -31.52507 -30.16169 -29.74095 -27.79970 -27.15804 -25.61700 -24.11514 -22.64015 -22.21971 -21.88114 -20.43090 -19.29583 -18.02012 -17.86501 -17.14829 -16.94037 -16.35881 -16.08391 -15.94335 -15.59319 -15.24760 -14.87529 -14.60854 -14.26294 -14.13262 -13.92326 -13.54061 -13.31146 -13.13768 -12.75120 -12.63305 -12.48026 -12.33749 -12.20760 -12.01920 -11.91386 -11.76672 -11.58945 -11.47118 -11.39671 -11.11929 -10.98203 -10.93213 -10.64498 -10.57002 -10.45690 -10.13420 -9.55212 -9.25785 -8.59763 -8.58223 -8.07808 -7.90473 -6.08658 -4.07187 1.37892 1.53607 2.21351 2.52988 3.13248 3.28537 3.33843 3.36230 3.41264 3.72785 3.83186 4.40632 4.58982 4.68439 4.85369 4.86408 4.87813 5.03377 5.10186 5.13383 5.13699 5.22030 5.25872 5.30440 5.34495 5.45973 5.52733 5.53914 5.66280 5.71823 5.78395 5.79850 5.93536 5.99631 6.19155 6.31572 6.46915 6.51706 6.61753 6.70712 6.89838 6.93699 7.18253 7.45754 7.58665 7.76732 8.17476 8.44198 8.81272 8.93127 9.51190 11.04335 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.004704 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.939005 B = 5951.058273 C = 7134.680204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.457 3.543 4 O -0.513 6.513 5 O -0.328 6.328 6 C 0.075 3.925 7 H 0.104 0.896 8 C -0.170 4.170 9 C 0.524 3.476 10 O -0.507 6.507 11 N -0.540 5.540 12 C 0.224 3.776 13 C -0.527 4.527 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.895 5.895 17 Si 0.871 3.129 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.109 3.891 22 C -0.063 4.063 23 C -0.151 4.151 24 C -0.082 4.082 25 C -0.206 4.206 26 C 0.121 3.879 27 O -0.308 6.308 28 C 0.027 3.973 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.028 0.972 39 H 0.265 0.735 40 H 0.144 0.856 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.776 0.375 0.813 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C 0.300 3.700 4 O -0.401 6.401 5 O -0.243 6.243 6 C 0.016 3.984 7 H 0.122 0.878 8 C -0.227 4.227 9 C 0.310 3.690 10 O -0.381 6.381 11 N -0.270 5.270 12 C 0.105 3.895 13 C -0.566 4.566 14 H 0.095 0.905 15 C -0.127 4.127 16 N -0.533 5.533 17 Si 0.697 3.303 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.188 1.188 21 C 0.017 3.983 22 C -0.082 4.082 23 C -0.170 4.170 24 C -0.100 4.100 25 C -0.225 4.225 26 C 0.074 3.926 27 O -0.221 6.221 28 C -0.068 4.068 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.161 0.839 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.296 -0.067 0.567 20.304 hybrid contribution 0.148 0.549 -1.030 1.176 sum -20.148 0.481 -0.462 20.159 Atomic orbital electron populations 1.21626 0.92443 1.02202 1.03508 1.21362 0.97688 0.90321 1.06100 1.23931 0.80816 0.93166 0.72053 1.90630 1.56667 1.46947 1.45890 1.86616 1.25283 1.29419 1.83007 1.22520 0.96443 0.80586 0.98819 0.87822 1.22284 1.03359 1.03486 0.93567 1.19780 0.86079 0.83567 0.79553 1.90710 1.57268 1.36311 1.53805 1.45210 1.25322 1.02206 1.54287 1.19781 0.80554 0.97555 0.91574 1.21267 0.89709 1.50758 0.94818 0.90471 1.24790 0.95780 0.94403 0.97718 1.69882 0.99083 1.49787 1.34596 0.86919 0.78268 0.78716 0.86350 1.20080 1.20847 1.18804 1.17041 0.93394 0.92402 0.95510 1.21462 0.98316 0.93715 0.94709 1.21007 0.97051 0.97635 1.01307 1.20932 0.96522 0.98681 0.93834 1.21073 1.03108 0.97193 1.01176 1.19420 0.94527 0.91479 0.87219 1.86194 1.48417 1.50981 1.36493 1.23052 0.87597 1.00491 0.95665 0.91792 0.91821 0.91295 0.87539 0.87569 0.89264 0.91335 0.90655 0.93748 0.95372 0.92541 0.83857 0.85426 0.85802 0.85393 0.92711 0.92650 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.20 37.16 0.34 -0.82 16 2 C -0.12 -1.13 6.53 -27.88 -0.18 -1.32 16 3 C 0.46 6.67 7.93 36.01 0.29 6.95 16 4 O -0.51 -8.33 15.20 -18.75 -0.29 -8.61 16 5 O -0.33 -5.78 9.45 -45.77 -0.43 -6.21 16 6 C 0.07 1.37 2.27 -27.89 -0.06 1.31 16 7 H 0.10 1.89 5.85 -51.93 -0.30 1.59 16 8 C -0.17 -2.68 9.42 37.15 0.35 -2.33 16 9 C 0.52 11.77 6.98 -10.98 -0.08 11.69 16 10 O -0.51 -13.28 16.19 -13.69 -0.22 -13.50 16 11 N -0.54 -11.99 2.24 -114.59 -0.26 -12.25 16 12 C 0.22 5.70 4.19 -5.19 -0.02 5.68 16 13 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 14 H 0.08 2.36 7.90 -52.49 -0.41 1.95 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 16 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 17 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 21 C 0.11 2.02 3.45 -83.49 -0.29 1.73 16 22 C -0.06 -1.05 7.56 -39.42 -0.30 -1.35 16 23 C -0.15 -2.01 10.04 -39.58 -0.40 -2.40 16 24 C -0.08 -0.97 10.04 -39.57 -0.40 -1.37 16 25 C -0.21 -2.69 9.04 -39.47 -0.36 -3.04 16 26 C 0.12 1.97 5.79 -39.07 -0.23 1.75 16 27 O -0.31 -5.03 10.11 -19.66 -0.20 -5.23 16 28 C 0.03 0.30 9.81 101.05 0.99 1.29 16 29 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.38 4.58 -51.93 -0.24 1.15 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.04 1.21 6.55 -51.93 -0.34 0.87 16 38 H 0.03 0.70 7.48 -51.93 -0.39 0.31 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.14 2.58 7.90 -52.49 -0.41 2.17 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.13 1.31 6.30 -52.48 -0.33 0.98 16 44 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 45 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 46 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -36.03 384.39 -6.89 -42.92 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.62 Total: 2.16 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.78 Total: 4.45 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.52 Total: -38.84 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.14 Total: -33.55 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.03 -6.89 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916554357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.868 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds