Wall clock time and date at job start Tue Mar 31 2020 19:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47023 * 2 1 4 4 O 1.20828 * 119.99769 * 0.02562 * 3 2 1 5 5 O 1.34223 * 120.00108 * 179.97438 * 3 2 1 6 6 C 1.45200 * 117.00260 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.46920 * 329.99580 * 6 5 3 8 8 C 1.52993 * 109.47221 * 89.99984 * 6 5 3 9 9 C 1.50703 * 109.46786 * 210.00110 * 6 5 3 10 10 O 1.21293 * 120.00216 * 346.06776 * 9 6 5 11 11 N 1.34784 * 119.99438 * 166.07016 * 9 6 5 12 12 C 1.46501 * 119.99492 * 184.57730 * 11 9 6 13 13 C 1.50702 * 109.47196 * 269.99763 * 12 11 9 14 14 H 1.07996 * 119.99523 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99806 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99517 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00044 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47132 * 89.99897 * 17 15 13 19 19 H 1.48503 * 109.46904 * 209.99532 * 17 15 13 20 20 H 1.48499 * 109.47265 * 329.99510 * 17 15 13 21 21 C 1.40127 * 120.00435 * 4.57577 * 11 9 6 22 22 C 1.38719 * 120.08877 * 96.31507 * 21 11 9 23 23 C 1.38191 * 119.98661 * 180.22979 * 22 21 11 24 24 C 1.38280 * 120.15894 * 359.50258 * 23 22 21 25 25 C 1.38239 * 120.18187 * 0.50370 * 24 23 22 26 26 C 1.38550 * 120.01342 * 359.74703 * 25 24 23 27 27 O 1.35976 * 120.08169 * 180.02562 * 26 25 24 28 28 C 1.42901 * 116.99997 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47502 * 300.00138 * 1 2 3 30 30 H 1.09003 * 109.47214 * 60.00165 * 1 2 3 31 31 H 1.08999 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47218 * 239.99574 * 2 1 3 33 33 H 1.08999 * 109.46432 * 119.99381 * 2 1 3 34 34 H 1.09004 * 109.47242 * 174.15587 * 8 6 5 35 35 H 1.09002 * 109.47038 * 294.15876 * 8 6 5 36 36 H 1.08996 * 109.47587 * 54.15953 * 8 6 5 37 37 H 1.09000 * 109.47306 * 30.00050 * 12 11 9 38 38 H 1.09005 * 109.47035 * 149.99883 * 12 11 9 39 39 H 0.97004 * 120.00018 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.00609 * 359.96423 * 22 21 11 41 41 H 1.08000 * 119.92174 * 179.74673 * 23 22 21 42 42 H 1.08003 * 119.91076 * 180.25194 * 24 23 22 43 43 H 1.08007 * 119.99292 * 179.77435 * 25 24 23 44 44 H 1.08996 * 109.47500 * 300.00050 * 28 27 26 45 45 H 1.08998 * 109.46928 * 60.00702 * 28 27 26 46 46 H 1.09007 * 109.46968 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2471 2.3392 0.0005 5 8 3.3520 1.6661 0.0005 6 6 3.7637 3.0586 0.0011 7 1 3.0134 3.6594 -0.5129 8 6 3.9078 3.5472 1.4437 9 6 5.0863 3.1915 -0.7089 10 8 5.7495 2.2039 -0.9458 11 7 5.5323 4.4079 -1.0806 12 6 6.7678 4.5288 -1.8584 13 6 7.9403 4.6637 -0.9212 14 1 7.7809 4.6594 0.1469 15 6 9.2163 4.7916 -1.4275 16 7 10.2394 4.9098 -0.6096 17 14 9.4918 4.7984 -3.2750 18 1 9.4186 6.1925 -3.7813 19 1 10.8305 4.2314 -3.5779 20 1 8.4455 3.9766 -3.9346 21 6 4.8141 5.5569 -0.7232 22 6 5.1759 6.2806 0.4036 23 6 4.4632 7.4107 0.7569 24 6 3.3956 7.8286 -0.0162 25 6 3.0291 7.1124 -1.1404 26 6 3.7353 5.9754 -1.4985 27 8 3.3763 5.2702 -2.6043 28 6 2.2601 5.7585 -3.3511 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 4.3158 4.5580 1.4459 35 1 2.9303 3.5488 1.9261 36 1 4.5799 2.8830 1.9869 37 1 6.8968 3.6400 -2.4761 38 1 6.7102 5.4101 -2.4974 39 1 11.1371 5.0002 -0.9657 40 1 6.0116 5.9585 1.0071 41 1 4.7432 7.9710 1.6366 42 1 2.8440 8.7147 0.2613 43 1 2.1925 7.4396 -1.7400 44 1 1.3758 5.7745 -2.7142 45 1 2.4724 6.7678 -3.7036 46 1 2.0806 5.1053 -4.2051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916554357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:30 Heat of formation + Delta-G solvation = -142.281733 kcal Electronic energy + Delta-G solvation = -30614.433008 eV Core-core repulsion = 26469.516724 eV Total energy + Delta-G solvation = -4144.916284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.23201 -41.43000 -40.27171 -38.46669 -37.79751 -36.58877 -34.85003 -34.05789 -32.97342 -31.35631 -31.11160 -29.58494 -28.12424 -26.69798 -25.58674 -24.16060 -23.70227 -23.06201 -21.60447 -20.77193 -19.37716 -19.08388 -19.05745 -18.42110 -17.55911 -17.53133 -17.21419 -16.89420 -16.60518 -16.21916 -15.96278 -15.78572 -15.46268 -15.10174 -14.87133 -14.60746 -14.46333 -14.45449 -13.93701 -13.85851 -13.64852 -13.41429 -13.28599 -13.27875 -12.92256 -12.87946 -12.68077 -12.65080 -12.50482 -12.24720 -12.13666 -12.01746 -11.97764 -11.94856 -11.70972 -11.62287 -10.96251 -10.83750 -9.88247 -9.73666 -9.16819 -8.35649 -6.40117 0.20987 0.41258 1.05627 1.23939 1.28160 1.33528 1.42481 1.44222 2.20688 2.28446 2.33899 2.70019 2.96947 3.24244 3.51225 3.75015 3.75857 3.91090 4.00875 4.10233 4.17347 4.26801 4.35679 4.37984 4.43789 4.44955 4.48659 4.55340 4.62457 4.64148 4.68961 4.79133 4.86629 4.89569 4.95095 4.98568 5.24733 5.25636 5.33652 5.37059 5.40200 5.47112 5.55266 5.80551 6.18148 6.29266 6.52208 6.58735 6.63571 7.07374 7.24256 8.80596 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.004704 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.939005 B = 5951.058273 C = 7134.680204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.451 3.549 4 O -0.531 6.531 5 O -0.348 6.348 6 C 0.088 3.912 7 H 0.107 0.893 8 C -0.162 4.162 9 C 0.514 3.486 10 O -0.562 6.562 11 N -0.539 5.539 12 C 0.236 3.764 13 C -0.531 4.531 14 H 0.039 0.961 15 C 0.020 3.980 16 N -0.937 5.937 17 Si 0.938 3.062 18 H -0.254 1.254 19 H -0.275 1.275 20 H -0.261 1.261 21 C 0.065 3.935 22 C -0.080 4.080 23 C -0.146 4.146 24 C -0.062 4.062 25 C -0.197 4.197 26 C 0.113 3.887 27 O -0.341 6.341 28 C 0.018 3.982 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.022 0.978 38 H 0.038 0.962 39 H 0.270 0.730 40 H 0.113 0.887 41 H 0.155 0.845 42 H 0.170 0.830 43 H 0.164 0.836 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.926 1.981 -0.006 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.150 4.150 3 C 0.296 3.704 4 O -0.420 6.420 5 O -0.264 6.264 6 C 0.030 3.970 7 H 0.125 0.875 8 C -0.219 4.219 9 C 0.302 3.698 10 O -0.440 6.440 11 N -0.267 5.267 12 C 0.115 3.885 13 C -0.569 4.569 14 H 0.057 0.943 15 C -0.179 4.179 16 N -0.577 5.577 17 Si 0.761 3.239 18 H -0.178 1.178 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.026 4.026 22 C -0.099 4.099 23 C -0.164 4.164 24 C -0.080 4.080 25 C -0.216 4.216 26 C 0.066 3.934 27 O -0.255 6.255 28 C -0.076 4.076 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.172 0.828 42 H 0.188 0.812 43 H 0.181 0.819 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.497 1.579 -0.239 23.552 hybrid contribution 1.018 0.105 -0.705 1.243 sum -22.479 1.684 -0.944 22.562 Atomic orbital electron populations 1.21646 0.91098 1.03886 1.02704 1.21606 0.98579 0.87057 1.07769 1.25000 0.79441 0.95006 0.70953 1.90605 1.56604 1.47996 1.46831 1.86644 1.27455 1.28756 1.83531 1.22268 0.93807 0.81551 0.99411 0.87522 1.22252 1.04424 1.03208 0.92056 1.20604 0.87286 0.82963 0.78917 1.90654 1.59202 1.38002 1.56188 1.45067 1.24430 1.03806 1.53369 1.19384 0.81359 0.96590 0.91142 1.21393 0.91386 1.50552 0.93615 0.94317 1.25682 0.95325 0.93849 1.03012 1.70015 0.99713 1.50980 1.36985 0.85857 0.78275 0.79840 0.79954 1.17789 1.20063 1.18542 1.17324 0.95301 0.92283 0.97680 1.21328 0.98595 0.95449 0.94555 1.21311 0.96771 0.96097 1.02240 1.21458 0.95193 0.99138 0.92219 1.21505 1.03118 0.95471 1.01529 1.19483 0.94248 0.92469 0.87205 1.86150 1.50337 1.52168 1.36845 1.23373 0.86642 1.01765 0.95836 0.92388 0.92830 0.88326 0.86129 0.85370 0.89164 0.89011 0.91455 0.95996 0.94389 0.92138 0.86863 0.82769 0.81210 0.81900 0.91088 0.90751 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.20 71.98 0.66 -1.30 16 2 C -0.11 -2.00 6.53 29.85 0.19 -1.80 16 3 C 0.45 12.94 7.93 71.24 0.56 13.51 16 4 O -0.53 -16.86 15.20 21.96 0.33 -16.53 16 5 O -0.35 -12.55 9.45 -45.10 -0.43 -12.97 16 6 C 0.09 3.34 2.27 29.85 0.07 3.41 16 7 H 0.11 3.96 5.85 -2.39 -0.01 3.95 16 8 C -0.16 -5.27 9.42 71.98 0.68 -4.59 16 9 C 0.51 24.51 6.98 87.66 0.61 25.13 16 10 O -0.56 -31.56 16.19 15.32 0.25 -31.31 16 11 N -0.54 -25.23 2.24 -634.83 -1.42 -26.65 16 12 C 0.24 12.59 4.19 85.63 0.36 12.94 16 13 C -0.53 -32.18 9.94 25.60 0.25 -31.92 16 14 H 0.04 2.57 7.90 -2.91 -0.02 2.55 16 15 C 0.02 1.21 5.47 84.66 0.46 1.68 16 16 N -0.94 -59.45 13.96 21.45 0.30 -59.15 16 17 Si 0.94 45.81 27.47 68.60 1.88 47.69 16 18 H -0.25 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.26 -12.56 6.54 99.48 0.65 -11.91 16 21 C 0.06 2.47 3.45 38.18 0.13 2.60 16 22 C -0.08 -2.75 7.56 22.37 0.17 -2.58 16 23 C -0.15 -3.55 10.04 22.27 0.22 -3.32 16 24 C -0.06 -1.22 10.04 22.28 0.22 -0.99 16 25 C -0.20 -4.41 9.04 22.34 0.20 -4.21 16 26 C 0.11 3.56 5.79 22.60 0.13 3.69 16 27 O -0.34 -10.87 10.11 -93.28 -0.94 -11.81 16 28 C 0.02 0.35 9.81 113.37 1.11 1.46 16 29 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 30 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 2.91 4.58 -2.38 -0.01 2.90 16 35 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.02 1.26 6.55 -2.39 -0.02 1.24 16 38 H 0.04 1.93 7.48 -2.38 -0.02 1.92 16 39 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.11 4.47 7.90 -2.91 -0.02 4.45 16 41 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.16 2.47 6.30 -2.91 -0.02 2.45 16 44 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 45 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 46 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -84.90 384.39 6.96 -77.94 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.93 Total: 19.10 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 6.05 Total: 13.70 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -1.12 Total: -85.80 kcal Atomic # 8 Polarization: -71.84 SS G_CDS: -0.79 Total: -72.62 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.69 kcal Total: -84.90 6.96 -77.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916554357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.342 kcal (2) G-P(sol) polarization free energy of solvation -84.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds