Wall clock time and date at job start Tue Mar 31 2020 18:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47194 * 2 1 4 4 C 1.42898 * 114.00096 * 184.98041 * 3 2 1 5 5 H 1.08997 * 109.47161 * 334.63312 * 4 3 2 6 6 C 1.53006 * 109.47494 * 214.63213 * 4 3 2 7 7 C 1.53002 * 109.46623 * 63.69648 * 6 4 3 8 8 C 1.50697 * 109.47304 * 94.63178 * 4 3 2 9 9 O 1.20828 * 119.99480 * 5.00102 * 8 4 3 10 10 O 1.34229 * 120.00421 * 185.00134 * 8 4 3 11 11 C 1.45203 * 117.00122 * 185.07074 * 10 8 4 12 12 C 1.50703 * 109.46871 * 184.92606 * 11 10 8 13 13 O 1.21276 * 120.00079 * 4.98682 * 12 11 10 14 14 N 1.34771 * 119.99622 * 184.98264 * 12 11 10 15 15 C 1.37144 * 120.00112 * 3.66045 * 14 12 11 16 16 H 1.07998 * 119.99844 * 307.90640 * 15 14 12 17 17 C 1.38888 * 119.99906 * 127.91033 * 15 14 12 18 18 N 1.31429 * 119.99657 * 173.28791 * 17 15 14 19 19 Si 1.86798 * 120.00194 * 353.28851 * 17 15 14 20 20 H 1.48494 * 109.47370 * 95.29728 * 19 17 15 21 21 H 1.48505 * 109.46932 * 215.29882 * 19 17 15 22 22 H 1.48497 * 109.47052 * 335.29445 * 19 17 15 23 23 C 1.39792 * 119.99977 * 183.65640 * 14 12 11 24 24 C 1.38962 * 120.08135 * 172.35647 * 23 14 12 25 25 C 1.38081 * 119.92453 * 180.23347 * 24 23 14 26 26 C 1.38307 * 120.07329 * 359.46780 * 25 24 23 27 27 C 1.38306 * 120.15767 * 0.55114 * 26 25 24 28 28 C 1.38082 * 120.07878 * 359.70829 * 27 26 25 29 29 H 1.09006 * 109.46608 * 59.99927 * 1 2 3 30 30 H 1.08997 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47565 * 300.00525 * 1 2 3 32 32 H 1.08994 * 109.47817 * 239.99842 * 2 1 3 33 33 H 1.09005 * 109.46774 * 119.99548 * 2 1 3 34 34 H 1.08991 * 109.47006 * 183.69962 * 6 4 3 35 35 H 1.09001 * 109.47027 * 303.70124 * 6 4 3 36 36 H 1.09000 * 109.47006 * 54.99984 * 7 6 4 37 37 H 1.09007 * 109.46581 * 174.99289 * 7 6 4 38 38 H 1.08992 * 109.47705 * 294.99084 * 7 6 4 39 39 H 1.09000 * 109.47099 * 64.92466 * 11 10 8 40 40 H 1.09001 * 109.47074 * 304.92655 * 11 10 8 41 41 H 0.97000 * 119.99491 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.03314 * 359.95278 * 24 23 14 43 43 H 1.08001 * 119.96104 * 179.74987 * 25 24 23 44 44 H 1.08000 * 119.91971 * 180.25936 * 26 25 24 45 45 H 1.07999 * 119.96318 * 179.71823 * 27 26 25 46 46 H 1.08000 * 120.04032 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4617 -0.1133 5 1 3.8952 0.5529 0.2637 6 6 3.9082 2.6615 0.7048 7 6 3.6103 2.4212 2.1862 8 6 3.8006 1.6573 -1.5599 9 8 2.9371 1.7853 -2.3953 10 8 5.0932 1.6893 -1.9203 11 6 5.3827 1.9936 -3.3103 12 6 6.8644 1.8666 -3.5542 13 8 7.5919 1.4637 -2.6715 14 7 7.3809 2.2007 -4.7533 15 6 6.5704 2.7267 -5.7266 16 1 5.6600 2.2168 -6.0050 17 6 6.9205 3.9152 -6.3543 18 7 6.2169 4.3512 -7.3751 19 14 8.3913 4.8939 -5.7475 20 1 9.5885 4.5373 -6.5504 21 1 8.1133 6.3456 -5.8913 22 1 8.6413 4.5770 -4.3185 23 6 8.7428 2.0111 -5.0051 24 6 9.2480 2.2037 -6.2852 25 6 10.5929 2.0108 -6.5313 26 6 11.4390 1.6370 -5.5030 27 6 10.9397 1.4440 -4.2278 28 6 9.5949 1.6299 -3.9756 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.9817 2.7883 0.5659 35 1 3.3899 3.5605 0.3712 36 1 4.0550 1.4759 2.4975 37 1 4.0323 3.2336 2.7780 38 1 2.5318 2.3831 2.3385 39 1 5.0636 3.0117 -3.5334 40 1 4.8473 1.2957 -3.9541 41 1 6.4612 5.1814 -7.8132 42 1 8.5884 2.4995 -7.0877 43 1 10.9854 2.1564 -7.5269 44 1 12.4912 1.4909 -5.6974 45 1 11.6024 1.1477 -3.4282 46 1 9.2055 1.4787 -2.9797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920674283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:53 Heat of formation + Delta-G solvation = -117.646575 kcal Electronic energy + Delta-G solvation = -29335.870643 eV Core-core repulsion = 25192.022620 eV Total energy + Delta-G solvation = -4143.848023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.62587 -40.03574 -38.34908 -37.53204 -35.98420 -35.23308 -34.09901 -32.33659 -31.05407 -30.21348 -30.04818 -28.31712 -26.79411 -25.32417 -23.16707 -22.49928 -22.03794 -21.47721 -20.70972 -19.62093 -18.32268 -17.89627 -17.28083 -16.50420 -16.26961 -16.11364 -15.83146 -15.54281 -15.24206 -14.73271 -14.41792 -14.22512 -14.12200 -13.85929 -13.39100 -13.10076 -13.03212 -12.80606 -12.70628 -12.61030 -12.51005 -12.28495 -12.14814 -12.04109 -11.79635 -11.54995 -11.42972 -11.29135 -11.07320 -10.95339 -10.77460 -10.64117 -10.40061 -10.35771 -10.19097 -9.66079 -9.59337 -9.04902 -8.51778 -8.10276 -7.19746 -6.66993 -4.61365 1.94343 2.10707 2.26598 2.51753 3.07656 3.17925 3.26504 3.35294 3.43723 3.97834 4.04125 4.49701 4.57553 4.68284 4.77019 4.84468 4.90289 5.02872 5.11767 5.16908 5.28506 5.31090 5.45766 5.55901 5.56107 5.62692 5.67916 5.72650 5.80125 5.82701 5.85968 5.87384 5.95717 6.10591 6.22765 6.32160 6.46559 6.60657 6.73402 6.81904 7.09083 7.16351 7.22005 7.28274 7.62918 7.84800 7.90109 8.07584 8.62738 8.92668 9.18578 10.35954 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.003088 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.249970 B = 9066.574250 C = 9756.052801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.106 3.894 5 H 0.100 0.900 6 C -0.119 4.119 7 C -0.146 4.146 8 C 0.433 3.567 9 O -0.491 6.491 10 O -0.338 6.338 11 C 0.070 3.930 12 C 0.499 3.501 13 O -0.541 6.541 14 N -0.400 5.400 15 C -0.381 4.381 16 H 0.112 0.888 17 C 0.087 3.913 18 N -0.850 5.850 19 Si 0.869 3.131 20 H -0.250 1.250 21 H -0.286 1.286 22 H -0.259 1.259 23 C 0.155 3.845 24 C -0.151 4.151 25 C -0.107 4.107 26 C -0.168 4.168 27 C -0.110 4.110 28 C -0.183 4.183 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.281 0.719 42 H 0.141 0.859 43 H 0.114 0.886 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 -5.287 12.820 14.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.270 6.270 4 C 0.047 3.953 5 H 0.118 0.882 6 C -0.156 4.156 7 C -0.204 4.204 8 C 0.274 3.726 9 O -0.377 6.377 10 O -0.253 6.253 11 C -0.007 4.007 12 C 0.290 3.710 13 O -0.423 6.423 14 N -0.111 5.111 15 C -0.507 4.507 16 H 0.129 0.871 17 C -0.125 4.125 18 N -0.482 5.482 19 Si 0.694 3.306 20 H -0.175 1.175 21 H -0.213 1.213 22 H -0.183 1.183 23 C 0.059 3.941 24 C -0.172 4.172 25 C -0.125 4.125 26 C -0.187 4.187 27 C -0.129 4.129 28 C -0.203 4.203 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.158 0.842 43 H 0.132 0.868 44 H 0.127 0.873 45 H 0.132 0.868 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.204 -5.139 12.827 14.185 hybrid contribution 0.734 0.444 -0.545 1.016 sum -2.470 -4.694 12.282 13.379 Atomic orbital electron populations 1.21718 0.93286 1.02289 1.03358 1.22660 0.96176 0.83349 1.00298 1.88033 1.18781 1.27125 1.93060 1.21650 0.83512 1.02165 0.88020 0.88239 1.21649 1.02487 0.96256 0.95240 1.21704 1.02349 1.01826 0.94490 1.24508 0.81123 0.74022 0.92958 1.90690 1.50337 1.44073 1.52633 1.86458 1.27322 1.80792 1.30753 1.22600 0.94766 1.04412 0.78873 1.20196 0.89165 0.79845 0.81773 1.90241 1.59553 1.48580 1.43956 1.41227 1.05325 1.53121 1.11403 1.19103 1.07038 1.06935 1.17626 0.87065 1.25455 0.97140 0.95674 0.94195 1.69665 1.38489 1.21790 1.18255 0.87000 0.82932 0.78977 0.81680 1.17477 1.21264 1.18277 1.18439 0.84837 0.97066 0.93790 1.21097 0.95893 1.03652 0.96524 1.20829 0.93147 0.99971 0.98598 1.20944 0.98942 1.05008 0.93814 1.21018 0.95289 1.00287 0.96294 1.22795 0.92910 1.02114 1.02452 0.91473 0.91038 0.91828 0.93027 0.92903 0.88794 0.90313 0.92603 0.92033 0.91921 0.87285 0.88331 0.90805 0.84185 0.86766 0.87274 0.86846 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.05 0.52 6.44 37.16 0.24 0.76 16 3 O -0.35 -4.49 9.09 -55.14 -0.50 -4.99 16 4 C 0.11 1.33 2.66 -27.88 -0.07 1.25 16 5 H 0.10 1.02 7.77 -51.93 -0.40 0.61 16 6 C -0.12 -1.29 5.63 -26.73 -0.15 -1.44 16 7 C -0.15 -1.24 9.74 37.16 0.36 -0.87 16 8 C 0.43 7.18 7.28 36.00 0.26 7.44 16 9 O -0.49 -9.54 16.16 -25.47 -0.41 -9.95 16 10 O -0.34 -6.14 9.75 -45.89 -0.45 -6.59 16 11 C 0.07 1.39 4.86 36.01 0.18 1.56 16 12 C 0.50 11.26 7.65 -10.99 -0.08 11.17 16 13 O -0.54 -12.55 12.91 -14.05 -0.18 -12.73 16 14 N -0.40 -9.54 2.26 -58.98 -0.13 -9.68 16 15 C -0.38 -9.55 7.97 -14.93 -0.12 -9.67 16 16 H 0.11 2.90 7.91 -52.49 -0.42 2.48 16 17 C 0.09 2.20 4.29 -17.48 -0.08 2.13 16 18 N -0.85 -22.44 13.96 55.49 0.77 -21.67 16 19 Si 0.87 20.48 24.13 -169.99 -4.10 16.38 16 20 H -0.25 -5.68 6.05 56.52 0.34 -5.34 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -6.42 6.90 56.52 0.39 -6.03 16 23 C 0.15 3.59 4.43 -83.69 -0.37 3.22 16 24 C -0.15 -3.35 5.76 -39.37 -0.23 -3.58 16 25 C -0.11 -2.04 9.79 -39.61 -0.39 -2.43 16 26 C -0.17 -2.96 10.04 -39.53 -0.40 -3.36 16 27 C -0.11 -2.04 10.04 -39.61 -0.40 -2.44 16 28 C -0.18 -3.97 9.04 -39.37 -0.36 -4.32 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.06 0.54 7.92 -51.93 -0.41 0.12 16 39 H 0.11 2.20 7.90 -51.93 -0.41 1.79 16 40 H 0.10 1.91 7.95 -51.93 -0.41 1.50 16 41 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.14 3.28 5.64 -52.49 -0.30 2.98 16 43 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 45 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.18 3.99 4.56 -56.10 -0.26 3.74 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -29.86 379.64 -7.38 -37.24 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.88 Total: 7.76 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.22 Total: -1.48 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.64 Total: -31.35 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.54 Total: -34.27 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.10 Total: 16.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.86 -7.38 -37.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920674283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.406 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds