Wall clock time and date at job start Tue Mar 31 2020 18:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47194 * 2 1 4 4 C 1.42898 * 114.00096 * 184.98041 * 3 2 1 5 5 H 1.08997 * 109.47161 * 334.63312 * 4 3 2 6 6 C 1.53006 * 109.47494 * 214.63213 * 4 3 2 7 7 C 1.53002 * 109.46623 * 63.69648 * 6 4 3 8 8 C 1.50697 * 109.47304 * 94.63178 * 4 3 2 9 9 O 1.20828 * 119.99480 * 5.00102 * 8 4 3 10 10 O 1.34229 * 120.00421 * 185.00134 * 8 4 3 11 11 C 1.45203 * 117.00122 * 185.07074 * 10 8 4 12 12 C 1.50703 * 109.46871 * 184.92606 * 11 10 8 13 13 O 1.21276 * 120.00079 * 4.98682 * 12 11 10 14 14 N 1.34771 * 119.99622 * 184.98264 * 12 11 10 15 15 C 1.37144 * 120.00112 * 3.66045 * 14 12 11 16 16 H 1.07998 * 119.99844 * 307.90640 * 15 14 12 17 17 C 1.38888 * 119.99906 * 127.91033 * 15 14 12 18 18 N 1.31429 * 119.99657 * 173.28791 * 17 15 14 19 19 Si 1.86798 * 120.00194 * 353.28851 * 17 15 14 20 20 H 1.48494 * 109.47370 * 95.29728 * 19 17 15 21 21 H 1.48505 * 109.46932 * 215.29882 * 19 17 15 22 22 H 1.48497 * 109.47052 * 335.29445 * 19 17 15 23 23 C 1.39792 * 119.99977 * 183.65640 * 14 12 11 24 24 C 1.38962 * 120.08135 * 172.35647 * 23 14 12 25 25 C 1.38081 * 119.92453 * 180.23347 * 24 23 14 26 26 C 1.38307 * 120.07329 * 359.46780 * 25 24 23 27 27 C 1.38306 * 120.15767 * 0.55114 * 26 25 24 28 28 C 1.38082 * 120.07878 * 359.70829 * 27 26 25 29 29 H 1.09006 * 109.46608 * 59.99927 * 1 2 3 30 30 H 1.08997 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47565 * 300.00525 * 1 2 3 32 32 H 1.08994 * 109.47817 * 239.99842 * 2 1 3 33 33 H 1.09005 * 109.46774 * 119.99548 * 2 1 3 34 34 H 1.08991 * 109.47006 * 183.69962 * 6 4 3 35 35 H 1.09001 * 109.47027 * 303.70124 * 6 4 3 36 36 H 1.09000 * 109.47006 * 54.99984 * 7 6 4 37 37 H 1.09007 * 109.46581 * 174.99289 * 7 6 4 38 38 H 1.08992 * 109.47705 * 294.99084 * 7 6 4 39 39 H 1.09000 * 109.47099 * 64.92466 * 11 10 8 40 40 H 1.09001 * 109.47074 * 304.92655 * 11 10 8 41 41 H 0.97000 * 119.99491 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.03314 * 359.95278 * 24 23 14 43 43 H 1.08001 * 119.96104 * 179.74987 * 25 24 23 44 44 H 1.08000 * 119.91971 * 180.25936 * 26 25 24 45 45 H 1.07999 * 119.96318 * 179.71823 * 27 26 25 46 46 H 1.08000 * 120.04032 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4617 -0.1133 5 1 3.8952 0.5529 0.2637 6 6 3.9082 2.6615 0.7048 7 6 3.6103 2.4212 2.1862 8 6 3.8006 1.6573 -1.5599 9 8 2.9371 1.7853 -2.3953 10 8 5.0932 1.6893 -1.9203 11 6 5.3827 1.9936 -3.3103 12 6 6.8644 1.8666 -3.5542 13 8 7.5919 1.4637 -2.6715 14 7 7.3809 2.2007 -4.7533 15 6 6.5704 2.7267 -5.7266 16 1 5.6600 2.2168 -6.0050 17 6 6.9205 3.9152 -6.3543 18 7 6.2169 4.3512 -7.3751 19 14 8.3913 4.8939 -5.7475 20 1 9.5885 4.5373 -6.5504 21 1 8.1133 6.3456 -5.8913 22 1 8.6413 4.5770 -4.3185 23 6 8.7428 2.0111 -5.0051 24 6 9.2480 2.2037 -6.2852 25 6 10.5929 2.0108 -6.5313 26 6 11.4390 1.6370 -5.5030 27 6 10.9397 1.4440 -4.2278 28 6 9.5949 1.6299 -3.9756 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.9817 2.7883 0.5659 35 1 3.3899 3.5605 0.3712 36 1 4.0550 1.4759 2.4975 37 1 4.0323 3.2336 2.7780 38 1 2.5318 2.3831 2.3385 39 1 5.0636 3.0117 -3.5334 40 1 4.8473 1.2957 -3.9541 41 1 6.4612 5.1814 -7.8132 42 1 8.5884 2.4995 -7.0877 43 1 10.9854 2.1564 -7.5269 44 1 12.4912 1.4909 -5.6974 45 1 11.6024 1.1477 -3.4282 46 1 9.2055 1.4787 -2.9797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920674283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:52 Heat of formation + Delta-G solvation = -133.171462 kcal Electronic energy + Delta-G solvation = -29336.543853 eV Core-core repulsion = 25192.022620 eV Total energy + Delta-G solvation = -4144.521233 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15074 -41.58543 -39.54447 -39.01550 -37.46517 -37.01413 -34.95011 -34.27832 -31.82287 -31.78599 -31.63022 -29.68594 -28.05896 -27.18327 -24.10412 -23.74652 -23.25516 -22.98122 -21.95470 -21.42296 -20.07829 -19.21976 -18.42815 -18.07090 -17.85148 -17.53963 -17.40974 -17.04900 -16.49336 -16.10493 -15.89287 -15.55152 -15.35004 -15.01965 -14.95292 -14.76202 -14.53605 -14.45129 -14.17524 -13.82319 -13.74571 -13.38039 -13.31010 -13.21188 -13.06782 -12.92583 -12.71124 -12.51814 -12.31864 -12.14282 -12.09909 -11.96703 -11.90839 -11.78949 -11.72291 -11.40243 -10.91051 -10.72970 -10.24121 -9.68097 -8.94023 -8.62044 -6.60011 0.34728 0.52831 0.92483 1.12961 1.21108 1.26682 1.35849 1.60314 2.08177 2.35057 2.59171 2.66863 3.05869 3.46430 3.56140 3.72818 3.79286 4.00716 4.11547 4.13898 4.17208 4.19758 4.25321 4.33215 4.43657 4.45060 4.48818 4.65393 4.75012 4.78328 4.80626 4.82144 5.00155 5.09132 5.14964 5.19212 5.20312 5.24752 5.41563 5.42958 5.53512 5.63426 5.70377 5.88654 5.91304 5.93657 6.33219 6.53883 6.71562 7.05644 7.34366 8.41648 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.003088 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.249970 B = 9066.574250 C = 9756.052801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 O -0.366 6.366 4 C 0.112 3.888 5 H 0.129 0.871 6 C -0.118 4.118 7 C -0.139 4.139 8 C 0.431 3.569 9 O -0.525 6.525 10 O -0.339 6.339 11 C 0.078 3.922 12 C 0.494 3.506 13 O -0.550 6.550 14 N -0.411 5.411 15 C -0.376 4.376 16 H 0.090 0.910 17 C 0.062 3.938 18 N -0.883 5.883 19 Si 0.915 3.085 20 H -0.234 1.234 21 H -0.284 1.284 22 H -0.278 1.278 23 C 0.122 3.878 24 C -0.172 4.172 25 C -0.107 4.107 26 C -0.152 4.152 27 C -0.104 4.104 28 C -0.201 4.201 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.287 0.713 42 H 0.119 0.881 43 H 0.144 0.856 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 -6.045 14.411 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 O -0.285 6.285 4 C 0.052 3.948 5 H 0.146 0.854 6 C -0.155 4.155 7 C -0.197 4.197 8 C 0.274 3.726 9 O -0.414 6.414 10 O -0.255 6.255 11 C 0.001 3.999 12 C 0.286 3.714 13 O -0.433 6.433 14 N -0.123 5.123 15 C -0.502 4.502 16 H 0.107 0.893 17 C -0.147 4.147 18 N -0.517 5.517 19 Si 0.739 3.261 20 H -0.157 1.157 21 H -0.211 1.211 22 H -0.204 1.204 23 C 0.028 3.972 24 C -0.193 4.193 25 C -0.125 4.125 26 C -0.171 4.171 27 C -0.122 4.122 28 C -0.221 4.221 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.137 0.863 43 H 0.162 0.838 44 H 0.173 0.827 45 H 0.168 0.832 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.900 -5.908 14.419 15.609 hybrid contribution 0.060 0.560 -1.012 1.158 sum -0.840 -5.349 13.407 14.459 Atomic orbital electron populations 1.21744 0.92335 1.03598 1.02749 1.22930 0.97080 0.82327 1.01100 1.88034 1.18823 1.28924 1.92683 1.21913 0.83876 1.04125 0.84886 0.85370 1.21687 1.02101 0.95029 0.96726 1.21672 1.02535 1.03049 0.92404 1.25645 0.79965 0.72463 0.94559 1.90671 1.50910 1.45793 1.53994 1.86489 1.28686 1.80920 1.29371 1.22350 0.93372 1.03916 0.80264 1.20485 0.89980 0.79457 0.81515 1.90230 1.60011 1.48981 1.44046 1.41267 1.05936 1.53689 1.11390 1.18908 1.06699 1.06880 1.17753 0.89253 1.25837 0.98610 0.96110 0.94119 1.69711 1.39926 1.22611 1.19405 0.86309 0.81750 0.77888 0.80122 1.15727 1.21057 1.20367 1.18726 0.84482 0.99045 0.94978 1.21090 0.97285 1.05372 0.95546 1.21252 0.91923 0.98710 1.00663 1.21445 1.00907 1.02142 0.92600 1.21449 0.94227 0.98551 0.98018 1.22812 0.94458 1.03204 1.01613 0.93496 0.88799 0.90973 0.94324 0.89881 0.88984 0.91482 0.91177 0.90920 0.91949 0.88087 0.88415 0.90301 0.86302 0.83832 0.82685 0.83224 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.04 0.79 6.44 71.98 0.46 1.26 16 3 O -0.37 -9.11 9.09 -129.95 -1.18 -10.29 16 4 C 0.11 2.71 2.66 29.85 0.08 2.79 16 5 H 0.13 2.37 7.77 -2.39 -0.02 2.35 16 6 C -0.12 -2.45 5.63 30.60 0.17 -2.28 16 7 C -0.14 -2.05 9.74 71.98 0.70 -1.35 16 8 C 0.43 14.63 7.28 71.24 0.52 15.15 16 9 O -0.53 -21.30 16.16 28.38 0.46 -20.84 16 10 O -0.34 -12.68 9.75 -45.06 -0.44 -13.12 16 11 C 0.08 3.25 4.86 71.24 0.35 3.60 16 12 C 0.49 23.09 7.65 87.66 0.67 23.76 16 13 O -0.55 -26.01 12.91 15.73 0.20 -25.81 16 14 N -0.41 -20.26 2.26 -458.90 -1.04 -21.29 16 15 C -0.38 -19.70 7.97 84.02 0.67 -19.03 16 16 H 0.09 4.97 7.91 -2.91 -0.02 4.94 16 17 C 0.06 3.22 4.29 84.91 0.36 3.59 16 18 N -0.88 -47.92 13.96 21.65 0.30 -47.62 16 19 Si 0.91 42.76 24.13 68.60 1.66 44.42 16 20 H -0.23 -10.17 6.05 99.48 0.60 -9.57 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.28 -13.86 6.90 99.48 0.69 -13.17 16 23 C 0.12 5.71 4.43 38.22 0.17 5.88 16 24 C -0.17 -7.53 5.76 22.41 0.13 -7.40 16 25 C -0.11 -3.76 9.79 22.25 0.22 -3.54 16 26 C -0.15 -4.66 10.04 22.30 0.22 -4.44 16 27 C -0.10 -3.49 10.04 22.25 0.22 -3.27 16 28 C -0.20 -8.52 9.04 22.41 0.20 -8.32 16 29 H 0.05 0.94 8.14 -2.38 -0.02 0.93 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.06 0.94 7.92 -2.39 -0.02 0.92 16 39 H 0.10 4.36 7.90 -2.39 -0.02 4.34 16 40 H 0.10 4.06 7.95 -2.39 -0.02 4.04 16 41 H 0.29 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.12 5.65 5.64 -2.91 -0.02 5.63 16 43 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 44 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 45 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 46 H 0.17 7.44 4.56 -60.18 -0.27 7.16 16 Total: -1.00 -66.76 379.64 6.45 -60.31 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.59 Total: 29.52 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.89 Total: 4.72 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -0.73 Total: -68.91 kcal Atomic # 8 Polarization: -69.10 SS G_CDS: -0.96 Total: -70.06 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.66 Total: 44.42 kcal Total: -66.76 6.45 -60.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920674283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.859 kcal (2) G-P(sol) polarization free energy of solvation -66.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds