Wall clock time and date at job start Tue Mar 31 2020 19:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 O 1.42902 * 109.46790 * 119.99710 * 2 1 3 5 5 C 1.35901 * 117.00133 * 84.85014 * 4 2 1 6 6 C 1.38760 * 120.05381 * 174.34896 * 5 4 2 7 7 C 1.38123 * 119.93998 * 179.70388 * 6 5 4 8 8 C 1.38291 * 120.05580 * 0.58933 * 7 6 5 9 9 C 1.38244 * 120.11027 * 359.68624 * 8 7 6 10 10 C 1.50704 * 119.96834 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46697 * 269.97456 * 10 9 8 12 12 O 1.20823 * 120.00586 * 359.97438 * 11 10 9 13 13 O 1.34234 * 119.99520 * 180.02562 * 11 10 9 14 14 C 1.45200 * 116.99655 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46803 * 180.02562 * 14 13 11 16 16 O 1.21276 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99789 * 179.97438 * 15 14 13 18 18 C 1.46494 * 119.99946 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47254 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00011 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99987 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99792 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99691 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47292 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46783 * 120.00179 * 23 21 19 26 26 H 1.48500 * 109.47340 * 239.99982 * 23 21 19 27 27 C 1.38168 * 120.05563 * 0.02562 * 9 8 7 28 28 H 1.09003 * 109.47282 * 60.00264 * 1 2 3 29 29 H 1.09002 * 109.47814 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47415 * 300.00523 * 1 2 3 31 31 H 1.08996 * 109.47227 * 239.99066 * 2 1 3 32 32 H 1.09003 * 109.47114 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46991 * 299.99647 * 3 2 1 34 34 H 1.08996 * 109.47691 * 59.99350 * 3 2 1 35 35 H 1.07998 * 120.02915 * 359.97094 * 6 5 4 36 36 H 1.07999 * 119.97505 * 180.29806 * 7 6 5 37 37 H 1.07999 * 119.94192 * 179.70260 * 8 7 6 38 38 H 1.08995 * 109.47293 * 29.97764 * 10 9 8 39 39 H 1.08999 * 109.46907 * 149.97534 * 10 9 8 40 40 H 1.08995 * 109.46967 * 299.99563 * 14 13 11 41 41 H 1.08994 * 109.47222 * 59.99783 * 14 13 11 42 42 H 0.96998 * 119.99683 * 0.02562 * 17 15 14 43 43 H 1.09001 * 109.47264 * 300.00516 * 18 17 15 44 44 H 1.09004 * 109.47411 * 60.00009 * 18 17 15 45 45 H 0.97001 * 119.99449 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.02419 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.1094 -2.0270 1.0991 6 6 2.6740 -2.7344 2.1508 7 6 2.7721 -4.1105 2.0821 8 6 2.3193 -4.7820 0.9612 9 6 1.7616 -4.0789 -0.0904 10 6 1.2686 -4.8140 -1.3101 11 6 2.3879 -4.9310 -2.3124 12 8 3.4741 -4.4649 -2.0623 13 8 2.1776 -5.5522 -3.4837 14 6 3.3010 -5.6280 -4.4005 15 6 2.8796 -6.3539 -5.6522 16 8 1.7445 -6.7670 -5.7607 17 7 3.7642 -6.5439 -6.6512 18 6 3.3548 -7.2500 -7.8677 19 6 4.5203 -7.3275 -8.8199 20 1 5.4710 -6.8946 -8.5460 21 6 4.3728 -7.9512 -10.0407 22 7 3.2149 -8.4780 -10.3743 23 14 5.8173 -8.0467 -11.2212 24 1 6.9982 -7.3826 -10.6133 25 1 6.1379 -9.4702 -11.4969 26 1 5.4643 -7.3638 -12.4918 27 6 1.6557 -2.7029 -0.0239 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5140 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.0325 -2.2100 3.0242 36 1 3.2071 -4.6620 2.9024 37 1 2.4013 -5.8575 0.9074 38 1 0.9325 -5.8103 -1.0228 39 1 0.4387 -4.2647 -1.7546 40 1 3.6285 -4.6208 -4.6579 41 1 4.1212 -6.1668 -3.9263 42 1 4.6722 -6.2138 -6.5642 43 1 3.0276 -8.2574 -7.6104 44 1 2.5341 -6.7114 -8.3416 45 1 3.1111 -8.9164 -11.2333 46 1 1.2196 -2.1541 -0.8456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921100472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:43 Heat of formation + Delta-G solvation = -145.988313 kcal Electronic energy + Delta-G solvation = -27456.410737 eV Core-core repulsion = 23311.333724 eV Total energy + Delta-G solvation = -4145.077013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93500 -40.34930 -38.80851 -38.09335 -36.35770 -34.27381 -33.94256 -32.78731 -32.43014 -30.31177 -29.49623 -28.07501 -27.67555 -26.52082 -23.68520 -22.92243 -22.28342 -21.17997 -20.81754 -19.96276 -18.30947 -17.86181 -17.44784 -16.88684 -16.47263 -16.21096 -16.06455 -15.76206 -15.44487 -15.06839 -14.88938 -14.78293 -14.32632 -14.20023 -13.77600 -13.50419 -13.23209 -13.15338 -13.00861 -12.77478 -12.64814 -12.47095 -12.26458 -12.14175 -12.02249 -11.84215 -11.77048 -11.53948 -11.10415 -11.01033 -10.99695 -10.96245 -10.72312 -10.64665 -10.36671 -9.44561 -9.23640 -9.15323 -8.80990 -8.44658 -8.01534 -6.21901 -4.29230 0.94608 1.16766 2.08611 2.44144 2.84497 3.14895 3.20839 3.28126 3.31133 3.49363 3.99535 4.17045 4.31443 4.34798 4.46057 4.50983 4.62564 4.71630 4.78771 4.91797 5.00321 5.10480 5.11322 5.14298 5.14742 5.16242 5.21484 5.25711 5.28848 5.31694 5.33979 5.48117 5.63867 5.67478 5.72384 6.00143 6.12819 6.25781 6.30623 6.48819 7.13782 7.20051 7.28198 7.43232 7.56884 7.65933 7.89603 8.47363 8.68837 8.93776 9.37253 10.88265 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.001793 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.950924 B =15611.766662 C =16231.831059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.075 3.925 3 C -0.148 4.148 4 O -0.311 6.311 5 C 0.132 3.868 6 C -0.151 4.151 7 C -0.079 4.079 8 C -0.140 4.140 9 C -0.036 4.036 10 C -0.075 4.075 11 C 0.461 3.539 12 O -0.502 6.502 13 O -0.329 6.329 14 C 0.049 3.951 15 C 0.499 3.501 16 O -0.534 6.534 17 N -0.707 5.707 18 C 0.251 3.749 19 C -0.545 4.545 20 H 0.065 0.935 21 C 0.063 3.937 22 N -0.884 5.884 23 Si 0.906 3.094 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.192 4.192 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.393 0.607 43 H 0.030 0.970 44 H 0.030 0.970 45 H 0.266 0.734 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 15.363 25.464 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.019 3.981 3 C -0.206 4.206 4 O -0.225 6.225 5 C 0.087 3.913 6 C -0.169 4.169 7 C -0.097 4.097 8 C -0.158 4.158 9 C -0.036 4.036 10 C -0.113 4.113 11 C 0.303 3.697 12 O -0.389 6.389 13 O -0.244 6.244 14 C -0.028 4.028 15 C 0.282 3.718 16 O -0.412 6.412 17 N -0.357 5.357 18 C 0.131 3.869 19 C -0.583 4.583 20 H 0.083 0.917 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.733 3.267 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.211 4.211 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.226 0.774 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.960 15.221 25.394 29.869 hybrid contribution 1.270 0.024 -0.983 1.606 sum -2.691 15.245 24.410 28.905 Atomic orbital electron populations 1.22396 0.94923 1.03226 1.03270 1.22470 0.94419 0.93803 0.87444 1.21853 1.02234 0.93378 1.03093 1.86114 1.81220 1.16304 1.38911 1.18901 0.95393 0.82604 0.94390 1.20458 1.03807 0.93874 0.98779 1.20915 0.97791 0.93205 0.97809 1.20935 1.00857 1.00142 0.93909 1.19043 0.97702 0.92821 0.94041 1.20322 0.95899 1.04154 0.90882 1.23571 0.89605 0.74874 0.81632 1.90696 1.26258 1.44584 1.77389 1.86562 1.40846 1.70294 1.26730 1.22863 0.88020 1.02696 0.89269 1.19895 0.86491 0.81239 0.84142 1.90707 1.19429 1.50511 1.80539 1.46372 1.13542 1.57552 1.18209 1.19183 0.96399 0.92142 0.79220 1.21247 0.97084 1.38584 1.01414 0.91706 1.24961 0.96308 0.94834 0.97939 1.69982 1.23387 1.36360 1.22425 0.86331 0.81906 0.77920 0.80580 1.19604 1.20758 1.20757 1.21109 1.06669 0.94525 0.98782 0.90831 0.91734 0.91393 0.90739 0.91575 0.90394 0.91467 0.85276 0.85173 0.85737 0.86158 0.86501 0.88584 0.88505 0.77416 0.95237 0.95248 0.92414 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 9.17 37.15 0.34 -0.79 16 2 C 0.07 0.57 2.85 -26.74 -0.08 0.49 16 3 C -0.15 -0.89 9.56 37.16 0.36 -0.53 16 4 O -0.31 -3.08 9.80 -19.43 -0.19 -3.27 16 5 C 0.13 1.36 6.60 -39.22 -0.26 1.10 16 6 C -0.15 -1.41 9.99 -39.43 -0.39 -1.80 16 7 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 8 C -0.14 -1.31 9.70 -39.56 -0.38 -1.69 16 9 C -0.04 -0.36 4.37 -104.64 -0.46 -0.81 16 10 C -0.08 -0.69 5.94 -29.03 -0.17 -0.86 16 11 C 0.46 6.00 7.95 36.01 0.29 6.29 16 12 O -0.50 -7.62 15.78 -18.75 -0.30 -7.92 16 13 O -0.33 -5.03 9.76 -45.91 -0.45 -5.48 16 14 C 0.05 0.74 5.94 36.01 0.21 0.95 16 15 C 0.50 9.91 7.91 -10.98 -0.09 9.83 16 16 O -0.53 -12.93 16.50 -14.10 -0.23 -13.16 16 17 N -0.71 -14.51 5.55 -61.47 -0.34 -14.85 16 18 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16 19 C -0.55 -14.53 9.28 -34.44 -0.32 -14.85 16 20 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.88 -25.70 13.29 55.43 0.74 -24.96 16 23 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C -0.19 -1.92 7.89 -39.44 -0.31 -2.23 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 6.91 -51.93 -0.36 0.07 16 30 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 31 H 0.07 0.59 6.31 -51.93 -0.33 0.26 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.12 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.10 1.27 8.13 -51.93 -0.42 0.84 16 41 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 42 H 0.39 6.78 8.32 -40.82 -0.34 6.44 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.13 1.13 5.43 -52.49 -0.28 0.84 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -34.67 396.09 -8.37 -43.04 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.76 Total: 2.93 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.79 Total: 2.13 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.40 Total: -39.81 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -1.17 Total: -29.83 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.67 -8.37 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921100472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.953 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds