Wall clock time and date at job start Tue Mar 31 2020 19:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 O 1.42902 * 109.46790 * 119.99710 * 2 1 3 5 5 C 1.35901 * 117.00133 * 84.85014 * 4 2 1 6 6 C 1.38760 * 120.05381 * 174.34896 * 5 4 2 7 7 C 1.38123 * 119.93998 * 179.70388 * 6 5 4 8 8 C 1.38291 * 120.05580 * 0.58933 * 7 6 5 9 9 C 1.38244 * 120.11027 * 359.68624 * 8 7 6 10 10 C 1.50704 * 119.96834 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46697 * 269.97456 * 10 9 8 12 12 O 1.20823 * 120.00586 * 359.97438 * 11 10 9 13 13 O 1.34234 * 119.99520 * 180.02562 * 11 10 9 14 14 C 1.45200 * 116.99655 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46803 * 180.02562 * 14 13 11 16 16 O 1.21276 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99789 * 179.97438 * 15 14 13 18 18 C 1.46494 * 119.99946 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47254 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00011 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99987 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99792 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99691 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47292 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46783 * 120.00179 * 23 21 19 26 26 H 1.48500 * 109.47340 * 239.99982 * 23 21 19 27 27 C 1.38168 * 120.05563 * 0.02562 * 9 8 7 28 28 H 1.09003 * 109.47282 * 60.00264 * 1 2 3 29 29 H 1.09002 * 109.47814 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47415 * 300.00523 * 1 2 3 31 31 H 1.08996 * 109.47227 * 239.99066 * 2 1 3 32 32 H 1.09003 * 109.47114 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46991 * 299.99647 * 3 2 1 34 34 H 1.08996 * 109.47691 * 59.99350 * 3 2 1 35 35 H 1.07998 * 120.02915 * 359.97094 * 6 5 4 36 36 H 1.07999 * 119.97505 * 180.29806 * 7 6 5 37 37 H 1.07999 * 119.94192 * 179.70260 * 8 7 6 38 38 H 1.08995 * 109.47293 * 29.97764 * 10 9 8 39 39 H 1.08999 * 109.46907 * 149.97534 * 10 9 8 40 40 H 1.08995 * 109.46967 * 299.99563 * 14 13 11 41 41 H 1.08994 * 109.47222 * 59.99783 * 14 13 11 42 42 H 0.96998 * 119.99683 * 0.02562 * 17 15 14 43 43 H 1.09001 * 109.47264 * 300.00516 * 18 17 15 44 44 H 1.09004 * 109.47411 * 60.00009 * 18 17 15 45 45 H 0.97001 * 119.99449 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.02419 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.1094 -2.0270 1.0991 6 6 2.6740 -2.7344 2.1508 7 6 2.7721 -4.1105 2.0821 8 6 2.3193 -4.7820 0.9612 9 6 1.7616 -4.0789 -0.0904 10 6 1.2686 -4.8140 -1.3101 11 6 2.3879 -4.9310 -2.3124 12 8 3.4741 -4.4649 -2.0623 13 8 2.1776 -5.5522 -3.4837 14 6 3.3010 -5.6280 -4.4005 15 6 2.8796 -6.3539 -5.6522 16 8 1.7445 -6.7670 -5.7607 17 7 3.7642 -6.5439 -6.6512 18 6 3.3548 -7.2500 -7.8677 19 6 4.5203 -7.3275 -8.8199 20 1 5.4710 -6.8946 -8.5460 21 6 4.3728 -7.9512 -10.0407 22 7 3.2149 -8.4780 -10.3743 23 14 5.8173 -8.0467 -11.2212 24 1 6.9982 -7.3826 -10.6133 25 1 6.1379 -9.4702 -11.4969 26 1 5.4643 -7.3638 -12.4918 27 6 1.6557 -2.7029 -0.0239 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5140 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.0325 -2.2100 3.0242 36 1 3.2071 -4.6620 2.9024 37 1 2.4013 -5.8575 0.9074 38 1 0.9325 -5.8103 -1.0228 39 1 0.4387 -4.2647 -1.7546 40 1 3.6285 -4.6208 -4.6579 41 1 4.1212 -6.1668 -3.9263 42 1 4.6722 -6.2138 -6.5642 43 1 3.0276 -8.2574 -7.6104 44 1 2.5341 -6.7114 -8.3416 45 1 3.1111 -8.9164 -11.2333 46 1 1.2196 -2.1541 -0.8456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921100472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:43 Heat of formation + Delta-G solvation = -167.100351 kcal Electronic energy + Delta-G solvation = -27457.326224 eV Core-core repulsion = 23311.333724 eV Total energy + Delta-G solvation = -4145.992500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88845 -41.20080 -40.37746 -38.84326 -37.50160 -36.19037 -34.58141 -34.42290 -33.44987 -31.11660 -30.79346 -29.21593 -28.21497 -28.03496 -24.74039 -24.29114 -23.33217 -21.77440 -21.74155 -21.64187 -19.33183 -18.91828 -18.82888 -17.95697 -17.80446 -17.17072 -17.07267 -16.84887 -16.77186 -16.38210 -16.21159 -15.84950 -15.45592 -15.08107 -14.70312 -14.58761 -14.35271 -14.16901 -14.08333 -13.76384 -13.73955 -13.57872 -13.34658 -13.12625 -12.93171 -12.92026 -12.76317 -12.74356 -12.47563 -12.23284 -12.12607 -11.91086 -11.78230 -11.66718 -11.57394 -11.47600 -10.92275 -10.83831 -9.93999 -9.87501 -9.14373 -8.30537 -6.46914 0.22269 0.47273 1.08594 1.33315 1.44470 1.44782 1.54377 1.58386 2.23169 2.33504 2.54994 2.85137 3.04819 3.45329 3.65091 3.79258 3.83841 3.86678 3.96209 4.01149 4.05606 4.07259 4.15176 4.29669 4.35329 4.50011 4.54498 4.63907 4.67784 4.78729 4.83788 4.92686 4.98354 5.06942 5.16623 5.21239 5.23199 5.27404 5.34426 5.41304 5.45560 5.56802 5.62207 5.81481 5.84120 6.47040 6.58056 6.62694 6.77761 7.19600 7.34653 8.81734 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.001793 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.950924 B =15611.766662 C =16231.831059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 C -0.146 4.146 4 O -0.325 6.325 5 C 0.116 3.884 6 C -0.162 4.162 7 C -0.080 4.080 8 C -0.150 4.150 9 C -0.048 4.048 10 C -0.070 4.070 11 C 0.465 3.535 12 O -0.525 6.525 13 O -0.347 6.347 14 C 0.061 3.939 15 C 0.500 3.500 16 O -0.583 6.583 17 N -0.699 5.699 18 C 0.266 3.734 19 C -0.556 4.556 20 H 0.086 0.914 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.985 3.015 24 H -0.253 1.253 25 H -0.279 1.279 26 H -0.279 1.279 27 C -0.202 4.202 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.140 0.860 36 H 0.155 0.845 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.412 0.588 43 H -0.007 1.007 44 H -0.007 1.007 45 H 0.269 0.731 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.906 16.188 26.274 30.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.012 3.988 3 C -0.203 4.203 4 O -0.239 6.239 5 C 0.071 3.929 6 C -0.181 4.181 7 C -0.098 4.098 8 C -0.169 4.169 9 C -0.048 4.048 10 C -0.107 4.107 11 C 0.309 3.691 12 O -0.413 6.413 13 O -0.263 6.263 14 C -0.016 4.016 15 C 0.286 3.714 16 O -0.463 6.463 17 N -0.351 5.351 18 C 0.144 3.856 19 C -0.594 4.594 20 H 0.104 0.896 21 C -0.196 4.196 22 N -0.568 5.568 23 Si 0.808 3.192 24 H -0.177 1.177 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.220 4.220 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.173 0.827 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.248 0.752 43 H 0.011 0.989 44 H 0.011 0.989 45 H 0.078 0.922 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.418 16.078 26.244 30.872 hybrid contribution 0.747 -0.204 -1.151 1.387 sum -1.670 15.875 25.093 29.740 Atomic orbital electron populations 1.22368 0.93947 1.03063 1.04019 1.22670 0.95281 0.94290 0.86600 1.21875 1.01829 0.92562 1.04075 1.86097 1.81506 1.16311 1.40024 1.19140 0.95934 0.82915 0.94912 1.20749 1.03787 0.94497 0.99047 1.21239 0.97171 0.93043 0.98339 1.21236 1.00584 1.01057 0.93979 1.19195 0.98229 0.92900 0.94512 1.20464 0.94908 1.05708 0.89642 1.24233 0.90209 0.73637 0.80997 1.90686 1.27462 1.45573 1.77600 1.86568 1.41070 1.71007 1.27628 1.22705 0.88325 1.03445 0.87145 1.20694 0.85412 0.80218 0.85122 1.90683 1.21573 1.52431 1.81646 1.46056 1.14776 1.57220 1.17032 1.18634 0.95607 0.90235 0.81152 1.21642 0.97730 1.38455 1.01596 0.89634 1.26054 0.99308 0.94179 1.00053 1.70135 1.26034 1.37394 1.23211 0.85103 0.78358 0.77974 0.77734 1.17685 1.20508 1.20490 1.21252 1.06914 0.94829 0.99025 0.89315 0.92342 0.91366 0.91324 0.92221 0.88686 0.91196 0.84252 0.82723 0.84284 0.83919 0.84610 0.86094 0.85981 0.75162 0.98903 0.98914 0.92194 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.17 71.98 0.66 -1.40 16 2 C 0.07 0.98 2.85 30.59 0.09 1.07 16 3 C -0.15 -1.62 9.56 71.98 0.69 -0.94 16 4 O -0.32 -6.35 9.80 -92.43 -0.91 -7.26 16 5 C 0.12 2.34 6.60 22.51 0.15 2.48 16 6 C -0.16 -2.90 9.99 22.37 0.22 -2.68 16 7 C -0.08 -1.25 10.04 22.25 0.22 -1.02 16 8 C -0.15 -2.55 9.70 22.28 0.22 -2.33 16 9 C -0.05 -0.89 4.37 -19.88 -0.09 -0.98 16 10 C -0.07 -1.16 5.94 29.10 0.17 -0.99 16 11 C 0.47 11.31 7.95 71.24 0.57 11.87 16 12 O -0.52 -15.03 15.78 21.97 0.35 -14.68 16 13 O -0.35 -10.11 9.76 -45.10 -0.44 -10.55 16 14 C 0.06 1.72 5.94 71.24 0.42 2.14 16 15 C 0.50 19.78 7.91 87.66 0.69 20.47 16 16 O -0.58 -28.92 16.50 15.78 0.26 -28.66 16 17 N -0.70 -28.64 5.55 -466.79 -2.59 -31.23 16 18 C 0.27 14.27 5.43 85.63 0.46 14.73 16 19 C -0.56 -29.61 9.28 25.60 0.24 -29.37 16 20 H 0.09 4.10 7.60 -2.91 -0.02 4.07 16 21 C 0.00 0.21 5.46 84.66 0.46 0.67 16 22 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 23 Si 0.99 41.69 29.54 68.60 2.03 43.72 16 24 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 25 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 27 C -0.20 -3.88 7.89 22.36 0.18 -3.70 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.75 6.91 -2.39 -0.02 0.73 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.07 1.06 6.31 -2.39 -0.02 1.05 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 37 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.14 1.72 8.08 -2.39 -0.02 1.70 16 39 H 0.14 1.73 8.08 -2.39 -0.02 1.71 16 40 H 0.12 2.88 8.13 -2.39 -0.02 2.86 16 41 H 0.12 2.90 8.13 -2.39 -0.02 2.88 16 42 H 0.41 13.60 8.32 -92.71 -0.77 12.83 16 43 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 45 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 46 H 0.14 2.28 5.43 -2.91 -0.02 2.27 16 Total: -1.00 -76.89 396.09 4.57 -72.33 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.23 Total: 21.19 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 5.36 Total: 10.04 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -2.30 Total: -86.12 kcal Atomic # 8 Polarization: -60.41 SS G_CDS: -0.74 Total: -61.15 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -76.89 4.57 -72.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921100472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.772 kcal (2) G-P(sol) polarization free energy of solvation -76.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds