Wall clock time and date at job start Tue Mar 31 2020 19:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.77580 * 2 1 4 4 C 1.54325 * 110.72022 * 236.76221 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.45263 * 4 2 1 6 6 C 1.34774 * 125.79121 * 178.92556 * 5 4 2 7 7 O 1.21280 * 120.00501 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99753 * 180.02562 * 6 5 4 9 9 C 1.50698 * 109.47230 * 179.97438 * 8 6 5 10 10 C 1.33639 * 122.75440 * 84.70165 * 9 8 6 11 11 S 1.76193 * 107.92754 * 179.97438 * 10 9 8 12 12 C 1.70979 * 90.28507 * 0.27459 * 11 10 9 13 13 C 1.50689 * 124.91963 * 179.83839 * 12 11 10 14 14 C 1.53007 * 117.50007 * 8.62590 * 13 12 11 15 15 C 1.53006 * 117.50084 * 300.00105 * 13 12 11 16 16 N 1.29032 * 110.16119 * 359.84200 * 12 11 10 17 17 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 18 18 C 1.54908 * 104.92961 * 24.15407 * 17 5 4 19 19 H 1.09008 * 111.00494 * 81.01141 * 18 17 5 20 20 N 1.46496 * 111.00674 * 204.86080 * 18 17 5 21 21 C 1.36940 * 120.00174 * 273.55140 * 20 18 17 22 22 H 1.08003 * 119.99978 * 359.97438 * 21 20 18 23 23 C 1.38805 * 120.00135 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00230 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99894 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47283 * 89.99857 * 25 23 21 27 27 H 1.48507 * 109.46875 * 209.99650 * 25 23 21 28 28 H 1.48498 * 109.47042 * 329.99196 * 25 23 21 29 29 H 1.08995 * 109.46983 * 296.76000 * 1 2 3 30 30 H 1.09001 * 109.47276 * 56.76464 * 1 2 3 31 31 H 1.09004 * 109.46998 * 176.76352 * 1 2 3 32 32 H 1.09004 * 109.88239 * 338.86059 * 4 2 1 33 33 H 1.08995 * 109.88239 * 99.86981 * 4 2 1 34 34 H 1.09001 * 109.47204 * 299.99785 * 8 6 5 35 35 H 1.09000 * 109.47543 * 59.99762 * 8 6 5 36 36 H 1.08000 * 126.03467 * 0.04097 * 10 9 8 37 37 H 1.09002 * 115.55565 * 154.32925 * 13 12 11 38 38 H 1.09002 * 117.49485 * 359.97438 * 14 13 12 39 39 H 1.09003 * 117.50165 * 145.02162 * 14 13 12 40 40 H 1.08993 * 117.50071 * 214.97783 * 15 13 12 41 41 H 1.09001 * 117.49587 * 359.97438 * 15 13 12 42 42 H 1.09002 * 110.36696 * 265.26054 * 17 5 4 43 43 H 1.08995 * 110.36608 * 143.04891 * 17 5 4 44 44 H 0.97000 * 120.00071 * 93.54813 * 20 18 17 45 45 H 0.96995 * 120.00143 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2466 -1.5526 -0.7390 6 6 3.9953 -2.3867 -1.4874 7 8 3.7240 -2.5610 -2.6566 8 6 5.1695 -3.1029 -0.8715 9 6 5.8327 -3.9676 -1.9124 10 6 6.7493 -3.4990 -2.7646 11 16 7.2594 -4.8310 -3.7989 12 6 6.1836 -5.8839 -2.9881 13 6 6.0000 -7.3446 -3.3096 14 6 6.9761 -7.9774 -4.3035 15 6 5.5296 -7.7037 -4.7206 16 7 5.5517 -5.2465 -2.0610 17 6 3.4633 -1.2497 0.6875 18 6 2.0790 -0.7954 1.2138 19 1 1.4452 -1.6536 1.4375 20 7 2.2215 0.0696 2.3874 21 6 2.3175 -0.4821 3.6371 22 1 2.2879 -1.5550 3.7574 23 6 2.4520 0.3376 4.7492 24 7 2.4876 1.6451 4.6027 25 14 2.5823 -0.4151 6.4539 26 1 4.0099 -0.6671 6.7760 27 1 2.0071 0.5206 7.4534 28 1 1.8334 -1.6970 6.4876 29 1 -0.3633 0.4627 0.9176 30 1 -0.3634 0.5632 -0.8596 31 1 -0.3633 -1.0261 -0.0580 32 1 1.3130 -1.4758 -1.5776 33 1 2.3715 -0.1025 -1.9988 34 1 5.8853 -2.3713 -0.4966 35 1 4.8231 -3.7273 -0.0480 36 1 7.1138 -2.4834 -2.8103 37 1 5.6451 -7.9660 -2.4874 38 1 7.7509 -7.3369 -4.7251 39 1 7.2636 -9.0153 -4.1352 40 1 4.8656 -8.5615 -4.8266 41 1 5.3526 -6.8834 -5.4161 42 1 4.1932 -0.4478 0.7984 43 1 3.7969 -2.1414 1.2182 44 1 2.2478 1.0332 2.2794 45 1 2.5812 2.2179 5.3798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939260962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:46 Heat of formation + Delta-G solvation = 28.646252 kcal Electronic energy + Delta-G solvation = -25848.329296 eV Core-core repulsion = 22185.870628 eV Total energy + Delta-G solvation = -3662.458668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53075 -40.62009 -38.93727 -38.06394 -35.85301 -34.11432 -33.00168 -32.41933 -29.60591 -29.09483 -27.25468 -26.46725 -25.83432 -23.37996 -23.20808 -22.35728 -21.37799 -20.99402 -20.16422 -19.09784 -18.69965 -18.16585 -17.36246 -17.18274 -16.73148 -16.34959 -15.73211 -15.67105 -15.32075 -15.24558 -14.89880 -14.55586 -14.50485 -14.34267 -14.14054 -14.06838 -13.41989 -13.25462 -13.10227 -13.02073 -12.89322 -12.83115 -12.59210 -12.28751 -12.18911 -12.14482 -12.00412 -11.83192 -11.70160 -11.52074 -11.38775 -11.10476 -10.90561 -10.67885 -10.34380 -9.71675 -9.63366 -9.03097 -7.93220 -5.22672 -0.32617 0.34918 0.67750 1.50626 1.51405 1.52570 1.53704 1.59805 2.07588 2.57940 2.76710 3.01020 3.37853 3.40628 3.66507 3.77888 3.78169 3.86077 3.93861 3.98984 4.05259 4.16889 4.18721 4.36371 4.38145 4.41564 4.47614 4.57334 4.67007 4.67666 4.70123 4.86895 4.88566 4.91437 5.01304 5.07098 5.10943 5.12721 5.15460 5.20351 5.33702 5.45411 5.57072 6.27712 6.45656 6.74727 7.05279 7.36007 8.06825 8.31588 9.29437 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.002400 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.606410 B =11662.660042 C =12560.883201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 H 0.082 0.918 4 C 0.120 3.880 5 N -0.612 5.612 6 C 0.532 3.468 7 O -0.579 6.579 8 C -0.061 4.061 9 C 0.072 3.928 10 C -0.259 4.259 11 S 0.165 5.835 12 C 0.067 3.933 13 C -0.112 4.112 14 C -0.148 4.148 15 C -0.157 4.157 16 N -0.500 5.500 17 C 0.083 3.917 18 C 0.170 3.830 19 H 0.060 0.940 20 N -0.719 5.719 21 C -0.239 4.239 22 H 0.078 0.922 23 C -0.068 4.068 24 N -0.965 5.965 25 Si 0.967 3.033 26 H -0.288 1.288 27 H -0.299 1.299 28 H -0.271 1.271 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.192 0.808 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.377 0.623 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.074 -15.185 -19.074 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.100 0.900 4 C -0.003 4.003 5 N -0.345 5.345 6 C 0.322 3.678 7 O -0.460 6.460 8 C -0.103 4.103 9 C -0.060 4.060 10 C -0.398 4.398 11 S 0.421 5.579 12 C -0.210 4.210 13 C -0.134 4.134 14 C -0.185 4.185 15 C -0.196 4.196 16 N -0.215 5.215 17 C -0.042 4.042 18 C 0.060 3.940 19 H 0.078 0.922 20 N -0.358 5.358 21 C -0.371 4.371 22 H 0.096 0.904 23 C -0.261 4.261 24 N -0.615 5.615 25 Si 0.796 3.204 26 H -0.215 1.215 27 H -0.226 1.226 28 H -0.196 1.196 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.132 0.868 36 H 0.209 0.791 37 H 0.150 0.850 38 H 0.120 0.880 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.210 0.790 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.305 -15.821 -20.069 27.197 hybrid contribution -0.487 1.101 1.976 2.314 sum 8.818 -14.720 -18.093 24.936 Atomic orbital electron populations 1.21628 0.92744 1.02203 1.02147 1.22384 0.97408 0.99206 0.93140 0.89955 1.22027 0.87281 0.94329 0.96651 1.48565 1.30014 1.43809 1.12118 1.20397 0.83641 0.78281 0.85517 1.90659 1.72145 1.65246 1.17934 1.20184 0.95504 0.98035 0.96549 1.19585 0.97236 0.89720 0.99444 1.27072 1.05644 1.05438 1.01630 1.83388 1.39547 0.99670 1.35276 1.26554 0.97639 1.00837 0.95959 1.20568 1.09292 0.87171 0.96362 1.23275 0.92660 1.03360 0.99241 1.23244 0.98569 1.04093 0.93719 1.65907 1.26262 1.08256 1.21080 1.23243 1.01160 1.00996 0.78838 1.21496 0.92825 0.93407 0.86316 0.92187 1.42372 1.87068 1.05105 1.01277 1.19574 1.40649 0.92159 0.84731 0.90404 1.25465 1.03562 0.95756 1.01293 1.69795 1.58797 1.03191 1.29754 0.85247 0.77514 0.77350 0.80270 1.21466 1.22620 1.19573 0.93145 0.90832 0.92287 0.91399 0.91257 0.84867 0.86753 0.79064 0.84976 0.88038 0.84948 0.85784 0.88963 0.91409 0.90404 0.78967 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.16 71.98 0.66 -2.86 16 2 C -0.10 -3.06 3.17 -9.60 -0.03 -3.09 16 3 H 0.08 2.55 8.00 -2.39 -0.02 2.53 16 4 C 0.12 3.48 6.49 86.68 0.56 4.04 16 5 N -0.61 -18.89 3.34 -811.12 -2.71 -21.60 16 6 C 0.53 17.13 7.85 87.66 0.69 17.82 16 7 O -0.58 -22.37 16.37 -3.03 -0.05 -22.42 16 8 C -0.06 -1.61 5.12 29.10 0.15 -1.46 16 9 C 0.07 2.01 5.23 41.52 0.22 2.23 16 10 C -0.26 -6.12 11.14 66.78 0.74 -5.38 16 11 S 0.17 3.21 21.94 -56.49 -1.24 1.97 16 12 C 0.07 1.59 7.04 88.52 0.62 2.21 16 13 C -0.11 -1.91 6.33 -11.54 -0.07 -1.99 16 14 C -0.15 -1.51 10.01 30.60 0.31 -1.20 16 15 C -0.16 -2.00 10.23 30.60 0.31 -1.69 16 16 N -0.50 -14.83 10.53 -179.41 -1.89 -16.72 16 17 C 0.08 2.67 6.38 86.85 0.55 3.23 16 18 C 0.17 6.13 3.13 46.38 0.15 6.27 16 19 H 0.06 2.24 8.04 -2.38 -0.02 2.23 16 20 N -0.72 -32.93 5.28 -316.38 -1.67 -34.60 16 21 C -0.24 -12.29 9.98 84.03 0.84 -11.45 16 22 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 23 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 24 N -0.97 -56.13 13.06 21.65 0.28 -55.85 16 25 Si 0.97 44.13 29.55 68.60 2.03 46.15 16 26 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.52 8.06 -2.39 -0.02 1.50 16 32 H 0.07 1.96 7.77 -2.38 -0.02 1.94 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.11 2.96 7.85 -2.39 -0.02 2.94 16 36 H 0.19 3.67 8.06 -2.91 -0.02 3.64 16 37 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.10 0.98 7.22 -2.39 -0.02 0.96 16 39 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 43 H 0.08 2.39 7.47 -2.39 -0.02 2.37 16 44 H 0.38 18.70 7.71 -92.71 -0.71 17.98 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -68.40 387.74 1.21 -67.20 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.28 Total: 32.40 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 6.16 Total: 3.47 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -5.98 Total: -128.76 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.24 Total: 1.97 kcal Total: -68.40 1.21 -67.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939260962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.841 kcal (2) G-P(sol) polarization free energy of solvation -68.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds