Wall clock time and date at job start Tue Mar 31 2020 19:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.49870 * 2 1 4 4 C 1.53192 * 109.52489 * 239.92594 * 2 1 3 5 5 N 1.46923 * 108.78132 * 185.39618 * 4 2 1 6 6 C 1.36942 * 120.63299 * 233.58940 * 5 4 2 7 7 H 1.08001 * 119.99738 * 27.67425 * 6 5 4 8 8 C 1.38808 * 119.99682 * 207.68063 * 6 5 4 9 9 N 1.31622 * 120.00535 * 17.36744 * 8 6 5 10 10 Si 1.86800 * 119.99592 * 197.35946 * 8 6 5 11 11 H 1.48504 * 109.46951 * 90.00230 * 10 8 6 12 12 H 1.48497 * 109.47261 * 209.99866 * 10 8 6 13 13 H 1.48500 * 109.47409 * 330.00632 * 10 8 6 14 14 C 1.46930 * 118.73923 * 53.60010 * 5 4 2 15 15 C 1.53196 * 108.77733 * 306.39956 * 14 5 4 16 16 C 1.53036 * 109.50315 * 120.06611 * 2 1 3 17 17 H 1.08997 * 109.45924 * 61.34185 * 16 2 1 18 18 N 1.46501 * 109.46139 * 301.36988 * 16 2 1 19 19 C 1.34774 * 119.99898 * 154.99679 * 18 16 2 20 20 O 1.21619 * 120.00040 * 0.02562 * 19 18 16 21 21 C 1.47254 * 119.99972 * 180.02562 * 19 18 16 22 22 N 1.29773 * 125.52436 * 359.97438 * 21 19 18 23 23 C 1.32588 * 116.75361 * 180.02562 * 22 21 19 24 24 C 1.34629 * 114.31337 * 0.04905 * 23 22 21 25 25 S 1.71622 * 109.59677 * 359.92641 * 24 23 22 26 26 C 1.51941 * 110.68812 * 179.97438 * 24 23 22 27 27 C 1.54227 * 104.85095 * 342.63565 * 26 24 23 28 28 C 1.52801 * 136.15857 * 180.12577 * 23 22 21 29 29 H 1.09003 * 109.47018 * 299.92752 * 1 2 3 30 30 H 1.08997 * 109.47577 * 59.93455 * 1 2 3 31 31 H 1.08997 * 109.46502 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.58595 * 305.18130 * 4 2 1 33 33 H 1.08998 * 109.58837 * 65.60104 * 4 2 1 34 34 H 0.96999 * 120.00065 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.58268 * 66.18195 * 14 5 4 36 36 H 1.08992 * 109.58734 * 186.60950 * 14 5 4 37 37 H 1.09002 * 109.49635 * 294.68471 * 15 14 5 38 38 H 1.08994 * 109.50087 * 174.58680 * 15 14 5 39 39 H 0.96999 * 120.00012 * 335.00550 * 18 16 2 40 40 H 1.09004 * 110.36661 * 101.47985 * 26 24 23 41 41 H 1.09000 * 110.36347 * 223.79270 * 26 24 23 42 42 H 1.09005 * 110.95690 * 144.66046 * 27 26 24 43 43 H 1.09009 * 110.95209 * 268.37542 * 27 26 24 44 44 H 1.08999 * 110.31070 * 316.44451 * 28 23 22 45 45 H 1.09004 * 110.31161 * 78.52749 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0420 -0.7235 -1.2495 5 7 3.5053 -0.8282 -1.1692 6 6 4.2943 -0.3780 -2.1939 7 1 3.9471 0.4216 -2.8315 8 6 5.5402 -0.9493 -2.4130 9 7 5.8295 -2.1199 -1.8853 10 14 6.8062 -0.0570 -3.4572 11 1 7.6356 0.8176 -2.5897 12 1 7.6770 -1.0502 -4.1357 13 1 6.1126 0.7712 -4.4761 14 6 4.1060 -1.4254 0.0314 15 6 3.5710 -0.6939 1.2665 16 6 2.0409 -0.7227 1.2485 17 1 1.6976 -1.7571 1.2353 18 7 1.5261 -0.0528 2.4453 19 6 1.3981 -0.7381 3.5987 20 8 1.7105 -1.9125 3.6461 21 6 0.8801 -0.0649 4.8015 22 7 0.5166 1.1789 4.8720 23 6 0.0749 1.6060 6.0469 24 6 0.0701 0.6672 7.0119 25 16 0.6545 -0.8156 6.3753 26 6 -0.4485 1.2434 8.3187 27 6 -0.3469 2.7724 8.1445 28 6 -0.4487 2.9245 6.6144 29 1 -0.3633 0.5127 0.8907 30 1 -0.3634 0.5148 -0.8893 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6064 -1.7216 -1.2980 33 1 1.7643 -0.1579 -2.1388 34 1 6.7003 -2.5189 -2.0382 35 1 3.8388 -2.4806 0.0873 36 1 5.1902 -1.3228 -0.0129 37 1 3.9155 0.3401 1.2546 38 1 3.9336 -1.1883 2.1676 39 1 1.2772 0.8840 2.4075 40 1 -1.4855 0.9479 8.4785 41 1 0.1731 0.9144 9.1514 42 1 -1.1745 3.2774 8.6428 43 1 0.6108 3.1435 8.5095 44 1 0.1695 3.7551 6.2738 45 1 -1.4861 3.0789 6.3174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942484269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:54 Heat of formation + Delta-G solvation = 27.028099 kcal Electronic energy + Delta-G solvation = -26472.467797 eV Core-core repulsion = 22809.938960 eV Total energy + Delta-G solvation = -3662.528837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71251 -39.67186 -37.66680 -36.21424 -34.55409 -32.65003 -31.18779 -30.09982 -29.04648 -28.61784 -25.96398 -25.65215 -24.56142 -22.49361 -21.77942 -20.97251 -20.64862 -19.67210 -18.97346 -18.35516 -17.05779 -16.55849 -16.29950 -15.84594 -15.10879 -14.80168 -14.45748 -14.24123 -13.87250 -13.79725 -13.65462 -13.44746 -13.28590 -13.22587 -12.77804 -12.67241 -12.42958 -12.08253 -11.69442 -11.50026 -11.45594 -11.42523 -11.29601 -11.06045 -10.82148 -10.66354 -10.41680 -10.31136 -10.20351 -9.98876 -9.92064 -9.77951 -9.66963 -9.49143 -8.90493 -8.67457 -8.41059 -6.67967 -5.77142 -3.19857 0.08931 0.82479 1.52796 2.09253 3.10643 3.18031 3.39500 3.46331 3.47488 3.63449 4.03368 4.33711 4.49643 4.50535 4.75853 4.96697 5.10418 5.13787 5.18281 5.28347 5.32512 5.40534 5.42057 5.50205 5.53333 5.61081 5.66320 5.79610 5.90729 6.00402 6.12087 6.26283 6.28788 6.34211 6.47158 6.60485 6.68468 6.78433 6.88103 6.97474 7.22099 7.38337 7.62763 7.69840 7.81259 8.20805 8.46050 9.22120 9.85489 10.41844 11.31385 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.002459 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.630666 B =11381.733841 C =11465.500628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.073 0.927 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.148 4.148 16 C 0.156 3.844 17 H 0.086 0.914 18 N -0.692 5.692 19 C 0.594 3.406 20 O -0.527 6.527 21 C 0.002 3.998 22 N -0.420 5.420 23 C 0.035 3.965 24 C -0.275 4.275 25 S 0.253 5.747 26 C -0.037 4.037 27 C -0.117 4.117 28 C -0.040 4.040 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.021 0.979 33 H 0.059 0.941 34 H 0.254 0.746 35 H 0.022 0.978 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.406 0.594 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.920 8.587 20.775 26.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 H 0.091 0.909 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.047 3.953 15 C -0.189 4.189 16 C 0.053 3.947 17 H 0.104 0.896 18 N -0.342 5.342 19 C 0.374 3.626 20 O -0.403 6.403 21 C -0.275 4.275 22 N -0.138 5.138 23 C -0.102 4.102 24 C -0.398 4.398 25 S 0.511 5.489 26 C -0.077 4.077 27 C -0.156 4.156 28 C -0.080 4.080 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.241 0.759 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.282 6.858 20.606 25.992 hybrid contribution 0.337 1.760 -0.390 1.833 sum -13.945 8.617 20.216 26.027 Atomic orbital electron populations 1.21784 0.95718 1.01611 1.01003 1.21984 0.94610 1.00721 0.96217 0.90894 1.20895 0.85944 0.96658 0.93692 1.44113 0.99304 1.71432 1.16625 1.19185 0.98199 1.12357 1.08580 0.91581 1.25046 0.99924 0.95354 0.99307 1.70038 1.21860 1.14561 1.48066 0.86290 0.81677 0.78902 0.79890 1.21473 1.21779 1.20442 1.20773 0.99502 0.93112 0.81875 1.22609 0.93532 1.01784 1.00956 1.21220 0.94803 0.96974 0.81703 0.89610 1.46094 1.63779 1.14875 1.09456 1.16702 0.78547 0.85756 0.81553 1.90876 1.50531 1.14832 1.84013 1.27521 1.08257 0.92456 0.99309 1.65911 1.10501 1.12133 1.25206 1.21703 1.02698 0.98872 0.86882 1.26975 1.08984 0.99315 1.04480 1.83893 1.54361 1.07521 1.03150 1.20705 1.01126 0.94602 0.91224 1.22334 1.03368 0.94822 0.95051 1.20887 1.01416 0.91787 0.93923 0.93372 0.92622 0.92860 0.96081 0.92268 0.93575 0.96021 0.89118 0.92465 0.92664 0.75920 0.89431 0.90082 0.89392 0.90261 0.89808 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.03 37.16 0.34 -1.66 16 2 C -0.11 -1.94 2.46 -90.50 -0.22 -2.16 16 3 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 4 C 0.16 3.20 5.80 -3.71 -0.02 3.18 16 5 N -0.59 -14.80 3.00 -172.32 -0.52 -15.32 16 6 C -0.25 -6.93 9.59 -15.06 -0.14 -7.08 16 7 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 9 N -0.90 -26.37 11.19 55.49 0.62 -25.75 16 10 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.17 4.24 5.31 -3.71 -0.02 4.22 16 15 C -0.15 -3.01 5.65 -26.61 -0.15 -3.16 16 16 C 0.16 2.78 1.88 -67.89 -0.13 2.65 16 17 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 18 N -0.69 -10.79 4.36 -54.90 -0.24 -11.03 16 19 C 0.59 9.73 7.77 -12.60 -0.10 9.63 16 20 O -0.53 -10.10 16.60 5.26 0.09 -10.01 16 21 C 0.00 0.02 7.44 -14.76 -0.11 -0.09 16 22 N -0.42 -5.63 10.22 -6.78 -0.07 -5.70 16 23 C 0.03 0.38 7.62 -82.49 -0.63 -0.25 16 24 C -0.27 -2.69 7.17 -34.97 -0.25 -2.94 16 25 S 0.25 2.88 23.03 -107.50 -2.48 0.40 16 26 C -0.04 -0.22 6.80 -26.63 -0.18 -0.40 16 27 C -0.12 -0.56 7.11 -25.52 -0.18 -0.75 16 28 C -0.04 -0.29 6.80 -26.26 -0.18 -0.47 16 29 H 0.05 0.62 7.36 -51.93 -0.38 0.23 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 34 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.41 5.69 7.96 -40.82 -0.32 5.37 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -31.73 373.54 -10.93 -42.66 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.87 Total: 1.66 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.06 Total: 0.73 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.20 Total: -57.81 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.48 Total: 0.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.73 -10.93 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942484269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.690 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds