Wall clock time and date at job start Tue Mar 31 2020 19:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09010 * 109.52338 * 2 1 4 4 C 1.53199 * 109.48952 * 120.08452 * 2 1 3 5 5 N 1.46921 * 108.76686 * 174.60012 * 4 2 1 6 6 C 1.36939 * 120.62899 * 126.40488 * 5 4 2 7 7 H 1.08003 * 120.00157 * 331.82009 * 6 5 4 8 8 C 1.38809 * 119.99921 * 151.80918 * 6 5 4 9 9 N 1.31622 * 120.00039 * 343.08427 * 8 6 5 10 10 Si 1.86798 * 119.99926 * 163.07758 * 8 6 5 11 11 H 1.48497 * 109.47201 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47234 * 120.00594 * 10 8 6 13 13 H 1.48508 * 109.47214 * 240.00203 * 10 8 6 14 14 C 1.46924 * 118.73817 * 306.38827 * 5 4 2 15 15 C 1.53188 * 108.78102 * 53.60916 * 14 5 4 16 16 C 1.53041 * 109.49830 * 239.91733 * 2 1 3 17 17 H 1.08990 * 109.46152 * 298.68971 * 16 2 1 18 18 N 1.46504 * 109.45902 * 58.66627 * 16 2 1 19 19 C 1.34777 * 119.99461 * 205.02519 * 18 16 2 20 20 O 1.21618 * 120.00329 * 0.02562 * 19 18 16 21 21 C 1.47255 * 119.99449 * 179.97438 * 19 18 16 22 22 N 1.29764 * 125.52414 * 180.02562 * 21 19 18 23 23 C 1.32592 * 116.75802 * 180.02562 * 22 21 19 24 24 C 1.34630 * 114.30579 * 359.96684 * 23 22 21 25 25 S 1.71621 * 109.60265 * 0.04258 * 24 23 22 26 26 C 1.51953 * 110.68558 * 180.08801 * 24 23 22 27 27 C 1.54239 * 104.84464 * 17.39526 * 26 24 23 28 28 C 1.52796 * 136.16077 * 179.97438 * 23 22 21 29 29 H 1.09000 * 109.47243 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47446 * 300.08310 * 1 2 3 31 31 H 1.09000 * 109.47226 * 60.08258 * 1 2 3 32 32 H 1.09004 * 109.59096 * 54.81229 * 4 2 1 33 33 H 1.09005 * 109.69941 * 294.45706 * 4 2 1 34 34 H 0.97006 * 119.99840 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.58655 * 293.81715 * 14 5 4 36 36 H 1.09007 * 109.58464 * 173.39760 * 14 5 4 37 37 H 1.09001 * 109.50063 * 185.41311 * 15 14 5 38 38 H 1.08997 * 109.52081 * 65.32715 * 15 14 5 39 39 H 0.97002 * 120.00040 * 25.02586 * 18 16 2 40 40 H 1.08996 * 110.36415 * 136.23702 * 26 24 23 41 41 H 1.09000 * 110.35874 * 258.44447 * 26 24 23 42 42 H 1.08999 * 110.94776 * 215.33475 * 27 26 24 43 43 H 1.08992 * 110.95550 * 91.61324 * 27 26 24 44 44 H 1.09003 * 110.31306 * 281.33419 * 28 23 22 45 45 H 1.08998 * 110.31116 * 43.51634 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0410 -0.7239 1.2497 5 7 3.5043 -0.8290 1.1698 6 6 4.2931 -0.3790 2.1948 7 1 3.9493 0.4261 2.8273 8 6 5.5343 -0.9577 2.4209 9 7 5.8205 -2.1288 1.8927 10 14 6.7986 -0.0744 3.4748 11 1 6.2349 1.2156 3.9472 12 1 7.1458 -0.9205 4.6448 13 1 8.0202 0.1835 2.6706 14 6 4.1052 -1.4263 -0.0306 15 6 3.5709 -0.6947 -1.2658 16 6 2.0407 -0.7231 -1.2483 17 1 1.6969 -1.7573 -1.2351 18 7 1.5265 -0.0529 -2.4453 19 6 1.3980 -0.7385 -3.5986 20 8 1.7085 -1.9134 -3.6455 21 6 0.8806 -0.0650 -4.8016 22 7 0.7132 -0.6193 -5.9628 23 6 0.2346 0.1522 -6.9292 24 6 -0.0121 1.4214 -6.5540 25 16 0.3900 1.6207 -4.8975 26 6 -0.5579 2.2292 -7.7196 27 6 -1.0292 1.1765 -8.7436 28 6 -0.1231 -0.0232 -8.4043 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8907 32 1 1.6051 -1.7219 1.2979 33 1 1.7631 -0.1603 2.1403 34 1 6.6878 -2.5335 2.0510 35 1 3.8377 -2.4815 -0.0866 36 1 5.1896 -1.3240 0.0141 37 1 3.9336 -1.1892 -2.1669 38 1 3.9157 0.3392 -1.2543 39 1 1.2785 0.8841 -2.4078 40 1 -1.3969 2.8445 -7.3947 41 1 0.2260 2.8535 -8.1483 42 1 -0.8558 1.5199 -9.7634 43 1 -2.0792 0.9271 -8.5911 44 1 0.7780 -0.0021 -9.0172 45 1 -0.6619 -0.9588 -8.5543 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942484272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:00 Heat of formation + Delta-G solvation = 29.797667 kcal Electronic energy + Delta-G solvation = -26430.808531 eV Core-core repulsion = 22768.399792 eV Total energy + Delta-G solvation = -3662.408739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.74133 -39.73143 -37.70617 -36.12904 -34.61867 -32.76372 -31.23371 -30.15885 -29.08365 -28.67533 -26.12568 -25.73981 -24.44087 -22.48032 -21.87891 -21.04446 -20.60954 -19.76834 -18.84712 -18.55467 -17.12773 -16.62362 -16.34026 -15.85005 -15.19720 -14.79981 -14.49810 -14.31491 -13.95281 -13.81851 -13.67636 -13.52342 -13.30297 -13.27410 -12.81985 -12.67010 -12.51092 -12.13455 -11.71613 -11.57597 -11.52913 -11.45635 -11.32844 -11.09050 -10.86049 -10.67450 -10.44885 -10.34044 -10.22969 -10.03246 -9.81501 -9.74667 -9.73039 -9.50615 -8.95387 -8.75083 -8.44373 -6.69321 -5.79073 -3.22453 0.05387 0.79177 1.37164 2.10460 2.74838 3.16419 3.37192 3.45023 3.46940 3.74926 4.00035 4.38006 4.48174 4.48559 4.68630 4.93523 5.06227 5.10893 5.16822 5.26498 5.27992 5.38421 5.38665 5.47192 5.47824 5.57323 5.64950 5.75543 5.85850 5.94108 6.06658 6.20038 6.21636 6.27839 6.41983 6.55900 6.65166 6.75234 6.82928 6.93906 7.23578 7.35963 7.55326 7.67664 7.79558 8.13858 8.44251 9.20105 9.83326 10.39810 11.29474 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025222 B = 0.002443 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.892427 B =11457.344863 C =11636.171249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.073 0.927 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.067 0.933 8 C 0.003 3.997 9 N -0.900 5.900 10 Si 0.902 3.098 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.289 1.289 14 C 0.174 3.826 15 C -0.149 4.149 16 C 0.159 3.841 17 H 0.088 0.912 18 N -0.710 5.710 19 C 0.591 3.409 20 O -0.496 6.496 21 C 0.017 3.983 22 N -0.395 5.395 23 C 0.035 3.965 24 C -0.257 4.257 25 S 0.183 5.817 26 C -0.038 4.038 27 C -0.116 4.116 28 C -0.041 4.041 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.022 0.978 33 H 0.059 0.941 34 H 0.254 0.746 35 H 0.022 0.978 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.393 0.607 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.329 11.142 -19.100 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 H 0.091 0.909 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.544 5.544 10 Si 0.732 3.268 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.216 1.216 14 C 0.047 3.953 15 C -0.190 4.190 16 C 0.056 3.944 17 H 0.106 0.894 18 N -0.362 5.362 19 C 0.371 3.629 20 O -0.369 6.369 21 C -0.261 4.261 22 N -0.110 5.110 23 C -0.100 4.100 24 C -0.379 4.379 25 S 0.440 5.560 26 C -0.078 4.078 27 C -0.155 4.155 28 C -0.081 4.081 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.227 0.773 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.793 10.421 -18.330 25.757 hybrid contribution 0.511 0.553 -0.365 0.837 sum -14.281 10.974 -18.695 25.959 Atomic orbital electron populations 1.21794 0.95703 1.01772 1.00902 1.22000 0.94604 1.00714 0.96273 0.90858 1.20895 0.86018 0.96702 0.93616 1.44116 0.99279 1.71446 1.16627 1.19199 0.98497 1.11974 1.08698 0.91573 1.25071 0.99990 0.95339 0.99215 1.70044 1.22114 1.14450 1.47821 0.86239 0.81697 0.79168 0.79734 1.20265 1.21727 1.21568 1.20770 0.99500 0.93165 0.81839 1.22621 0.93470 1.01812 1.01079 1.21213 0.94831 0.97026 0.81299 0.89434 1.46134 1.65930 1.14022 1.10083 1.16681 0.78923 0.86166 0.81103 1.90877 1.48049 1.14694 1.83272 1.27370 1.08415 0.93383 0.96959 1.65695 1.10996 1.36009 0.98301 1.21830 1.01977 0.88705 0.97536 1.26771 1.09220 1.01869 1.00073 1.83608 1.56856 1.12692 1.02834 1.20737 1.00462 0.96750 0.89813 1.22342 0.99929 0.94053 0.99184 1.20914 1.00248 0.99961 0.86972 0.92708 0.92504 0.93578 0.96057 0.92216 0.93596 0.95961 0.89119 0.92574 0.92418 0.77287 0.90010 0.89296 0.89285 0.90208 0.89330 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.03 37.15 0.34 -1.52 16 2 C -0.11 -1.85 2.46 -90.50 -0.22 -2.07 16 3 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 4 C 0.16 3.11 5.80 -3.71 -0.02 3.09 16 5 N -0.59 -14.54 2.99 -172.32 -0.52 -15.05 16 6 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 7 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 8 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 9 N -0.90 -26.17 11.20 55.49 0.62 -25.55 16 10 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 15 C -0.15 -2.96 5.65 -26.61 -0.15 -3.11 16 16 C 0.16 2.73 1.88 -67.88 -0.13 2.60 16 17 H 0.09 1.69 7.57 -51.93 -0.39 1.29 16 18 N -0.71 -10.29 4.36 -54.89 -0.24 -10.53 16 19 C 0.59 9.77 7.77 -12.60 -0.10 9.67 16 20 O -0.50 -10.25 16.73 5.26 0.09 -10.16 16 21 C 0.02 0.25 7.44 -14.76 -0.11 0.14 16 22 N -0.40 -6.06 10.58 -6.78 -0.07 -6.14 16 23 C 0.04 0.41 7.62 -82.49 -0.63 -0.21 16 24 C -0.26 -2.49 7.17 -34.97 -0.25 -2.74 16 25 S 0.18 1.83 22.31 -107.50 -2.40 -0.56 16 26 C -0.04 -0.22 6.80 -26.62 -0.18 -0.40 16 27 C -0.12 -0.56 7.11 -25.49 -0.18 -0.74 16 28 C -0.04 -0.32 6.80 -26.25 -0.18 -0.49 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.05 0.52 7.36 -51.93 -0.38 0.13 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 34 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.39 4.58 7.45 -40.82 -0.30 4.28 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -33.20 372.82 -10.84 -44.04 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.85 Total: 0.47 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.06 Total: 1.37 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.21 Total: -57.28 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.40 Total: -0.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.20 -10.84 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942484272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.840 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds