Wall clock time and date at job start Tue Mar 31 2020 19:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.52652 * 2 1 4 4 C 1.53200 * 109.49461 * 120.07677 * 2 1 3 5 5 N 1.46927 * 108.77067 * 174.58947 * 4 2 1 6 6 C 1.36943 * 120.63029 * 126.41629 * 5 4 2 7 7 H 1.08006 * 119.99758 * 207.65449 * 6 5 4 8 8 C 1.38809 * 120.00002 * 27.65086 * 6 5 4 9 9 N 1.31622 * 120.00265 * 17.38237 * 8 6 5 10 10 Si 1.86800 * 120.00044 * 197.37714 * 8 6 5 11 11 H 1.48496 * 109.47139 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46803 * 120.00178 * 10 8 6 13 13 H 1.48495 * 109.47200 * 240.00164 * 10 8 6 14 14 C 1.46925 * 118.74259 * 306.38711 * 5 4 2 15 15 C 1.53196 * 108.77228 * 53.61332 * 14 5 4 16 16 C 1.53037 * 109.50055 * 239.91377 * 2 1 3 17 17 H 1.09003 * 109.44465 * 58.67264 * 16 2 1 18 18 N 1.46495 * 109.45947 * 298.70416 * 16 2 1 19 19 C 1.34776 * 119.99944 * 154.92967 * 18 16 2 20 20 O 1.21626 * 120.00288 * 359.97438 * 19 18 16 21 21 C 1.47257 * 120.00080 * 180.02562 * 19 18 16 22 22 N 1.29761 * 125.52744 * 359.97271 * 21 19 18 23 23 C 1.32594 * 116.75399 * 180.02562 * 22 21 19 24 24 C 1.34617 * 114.31287 * 0.04577 * 23 22 21 25 25 S 1.71628 * 109.60196 * 359.94000 * 24 23 22 26 26 C 1.51943 * 110.69035 * 179.72549 * 24 23 22 27 27 C 1.54096 * 104.91561 * 342.92716 * 26 24 23 28 28 C 1.52798 * 136.15630 * 180.12086 * 23 22 21 29 29 H 1.09007 * 109.47079 * 180.08508 * 1 2 3 30 30 H 1.09004 * 109.47493 * 300.08229 * 1 2 3 31 31 H 1.09001 * 109.47350 * 60.08665 * 1 2 3 32 32 H 1.08992 * 109.58937 * 54.80082 * 4 2 1 33 33 H 1.09000 * 109.58542 * 294.36732 * 4 2 1 34 34 H 0.96996 * 120.00329 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.58837 * 293.82943 * 14 5 4 36 36 H 1.08993 * 109.58985 * 173.39994 * 14 5 4 37 37 H 1.08999 * 109.49569 * 185.41896 * 15 14 5 38 38 H 1.08991 * 109.49898 * 65.31863 * 15 14 5 39 39 H 0.97003 * 120.00329 * 334.93085 * 18 16 2 40 40 H 1.08996 * 110.36378 * 101.75124 * 26 24 23 41 41 H 1.09003 * 110.36690 * 224.06639 * 26 24 23 42 42 H 1.09004 * 110.78849 * 268.16250 * 27 26 24 43 43 H 1.08993 * 111.09443 * 144.49565 * 27 26 24 44 44 H 1.09005 * 110.31159 * 316.45369 * 28 23 22 45 45 H 1.08997 * 110.31437 * 78.63098 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 1.2497 5 7 3.5045 -0.8290 1.1697 6 6 4.2935 -0.3791 2.1946 7 1 5.2989 -0.0399 1.9933 8 6 3.8009 -0.3590 3.4922 9 7 2.7374 -1.0691 3.8036 10 14 4.6476 0.6759 4.7967 11 1 5.8116 1.3750 4.1954 12 1 3.6910 1.6781 5.3313 13 1 5.1129 -0.2021 5.9002 14 6 4.1053 -1.4267 -0.0305 15 6 3.5709 -0.6950 -1.2658 16 6 2.0408 -0.7232 -1.2482 17 1 1.6582 -0.2244 -2.1387 18 7 1.5784 -2.1131 -1.2306 19 6 1.4490 -2.7950 -2.3859 20 8 1.7156 -2.2562 -3.4432 21 6 0.9836 -4.1920 -2.3682 22 7 0.6702 -4.8689 -1.3065 23 6 0.2709 -6.1196 -1.4923 24 6 0.2506 -6.5093 -2.7807 25 16 0.7634 -5.2134 -3.7823 26 6 -0.2110 -7.9522 -2.8979 27 6 -0.0576 -8.5342 -1.4794 28 6 -0.1887 -7.2735 -0.6023 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8908 32 1 1.6052 -1.7215 1.2982 33 1 1.7637 -0.1577 2.1390 34 1 2.3934 -1.0553 4.7105 35 1 3.8376 -2.4818 -0.0865 36 1 5.1895 -1.3246 0.0140 37 1 3.9335 -1.1898 -2.1668 38 1 3.9159 0.3388 -1.2540 39 1 1.3653 -2.5427 -0.3874 40 1 -1.2538 -7.9924 -3.2127 41 1 0.4196 -8.4963 -3.6011 42 1 0.9219 -8.9958 -1.3545 43 1 -0.8529 -9.2463 -1.2594 44 1 0.4538 -7.3540 0.2746 45 1 -1.2259 -7.1286 -0.3004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942484273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:03 Heat of formation + Delta-G solvation = 29.295558 kcal Electronic energy + Delta-G solvation = -27136.938468 eV Core-core repulsion = 23474.507955 eV Total energy + Delta-G solvation = -3662.430512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59611 -39.70392 -37.64471 -36.08439 -34.22146 -32.21476 -31.80167 -29.80514 -28.89149 -28.46301 -25.97261 -25.54038 -24.79911 -22.41666 -21.79990 -21.03911 -20.67027 -19.37670 -18.63168 -18.11510 -17.04796 -16.62387 -16.17013 -15.43863 -15.03816 -14.82386 -14.35157 -14.13085 -13.95982 -13.68840 -13.54098 -13.41318 -13.20237 -13.11794 -12.97816 -12.64322 -12.29679 -12.01035 -11.54978 -11.45123 -11.34080 -11.30210 -11.21153 -11.01818 -10.94999 -10.71641 -10.36180 -10.26859 -10.11861 -9.95324 -9.79521 -9.68334 -9.54314 -9.41278 -8.81203 -8.58790 -8.45372 -6.67212 -5.79261 -3.21107 0.21882 0.94831 1.64127 2.23799 3.24470 3.30767 3.37059 3.45386 3.47588 3.79096 4.16825 4.47561 4.49910 4.63382 4.90190 5.11460 5.22893 5.27181 5.32506 5.32959 5.42488 5.44569 5.54356 5.56050 5.66624 5.68791 5.81395 5.84153 5.96041 6.09058 6.15791 6.20508 6.34305 6.48159 6.53201 6.55475 6.66704 6.78386 6.91731 6.99312 7.30550 7.38368 7.61568 7.77612 7.81002 8.31628 8.44163 9.20529 9.83919 10.40527 11.29054 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.003276 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.850781 B = 8545.965099 C = 9552.817503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 H 0.081 0.919 4 C 0.177 3.823 5 N -0.592 5.592 6 C -0.251 4.251 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.146 3.854 15 C -0.146 4.146 16 C 0.158 3.842 17 H 0.077 0.923 18 N -0.680 5.680 19 C 0.595 3.405 20 O -0.539 6.539 21 C 0.004 3.996 22 N -0.414 5.414 23 C 0.039 3.961 24 C -0.275 4.275 25 S 0.241 5.759 26 C -0.036 4.036 27 C -0.116 4.116 28 C -0.043 4.043 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.017 0.983 33 H 0.092 0.908 34 H 0.253 0.747 35 H 0.017 0.983 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.415 0.585 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.467 -12.105 -13.301 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 H 0.099 0.901 4 C 0.051 3.949 5 N -0.314 5.314 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.020 3.980 15 C -0.186 4.186 16 C 0.054 3.946 17 H 0.095 0.905 18 N -0.332 5.332 19 C 0.376 3.624 20 O -0.416 6.416 21 C -0.274 4.274 22 N -0.130 5.130 23 C -0.097 4.097 24 C -0.397 4.397 25 S 0.499 5.501 26 C -0.075 4.075 27 C -0.156 4.156 28 C -0.082 4.082 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.253 0.747 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.110 -11.224 -14.465 20.025 hybrid contribution 0.059 -0.234 1.916 1.931 sum -8.051 -11.458 -12.550 18.804 Atomic orbital electron populations 1.21737 0.95799 1.01361 1.00931 1.22142 0.94826 1.00776 0.97062 0.90088 1.20811 0.83166 0.96716 0.94209 1.44067 1.01635 1.69467 1.16228 1.19228 0.97729 1.35299 0.85806 0.91622 1.25020 0.98544 0.99099 0.96939 1.70037 1.25639 1.40229 1.18696 0.86245 0.78913 0.80022 0.81730 1.20285 1.21587 1.21786 1.20870 0.96556 0.94155 0.86429 1.22401 0.94719 1.01950 0.99537 1.21052 0.94620 0.79873 0.99010 0.90485 1.45991 1.64424 1.14080 1.08681 1.16692 0.78241 0.82447 0.85011 1.90821 1.51958 1.68400 1.30462 1.27466 1.08722 1.00314 0.90853 1.65929 1.10385 1.05994 1.30739 1.21711 1.02586 0.91327 0.94065 1.26942 1.09414 1.04367 0.98996 1.83744 1.56913 1.00428 1.09008 1.20668 1.01413 0.86806 0.98651 1.22315 1.03288 0.96746 0.93209 1.20915 1.02017 0.88182 0.97102 0.93122 0.92488 0.93635 0.96478 0.89013 0.93706 0.96507 0.92832 0.92446 0.91101 0.74697 0.89528 0.90173 0.90285 0.89419 0.89580 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.05 37.16 0.34 -1.91 16 2 C -0.13 -2.34 2.67 -90.50 -0.24 -2.59 16 3 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 4 C 0.18 4.04 4.30 -3.71 -0.02 4.02 16 5 N -0.59 -14.54 2.99 -172.32 -0.52 -15.05 16 6 C -0.25 -6.81 9.59 -15.06 -0.14 -6.95 16 7 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 9 N -0.90 -25.68 11.19 55.49 0.62 -25.06 16 10 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 C 0.15 3.13 6.26 -3.71 -0.02 3.11 16 15 C -0.15 -2.69 5.77 -26.61 -0.15 -2.84 16 16 C 0.16 2.80 2.21 -67.89 -0.15 2.65 16 17 H 0.08 1.34 7.57 -51.93 -0.39 0.94 16 18 N -0.68 -11.94 3.59 -54.90 -0.20 -12.14 16 19 C 0.59 10.35 7.77 -12.60 -0.10 10.25 16 20 O -0.54 -10.19 16.60 5.25 0.09 -10.10 16 21 C 0.00 0.06 7.44 -14.76 -0.11 -0.05 16 22 N -0.41 -6.58 10.22 -6.78 -0.07 -6.65 16 23 C 0.04 0.51 7.62 -82.50 -0.63 -0.12 16 24 C -0.27 -3.08 7.17 -34.98 -0.25 -3.34 16 25 S 0.24 2.98 23.03 -107.50 -2.48 0.51 16 26 C -0.04 -0.26 6.79 -26.70 -0.18 -0.44 16 27 C -0.12 -0.76 7.10 -25.57 -0.18 -0.94 16 28 C -0.04 -0.40 6.81 -26.24 -0.18 -0.58 16 29 H 0.05 0.81 7.54 -51.92 -0.39 0.42 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.02 0.41 6.64 -51.93 -0.34 0.07 16 33 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 34 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 36 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.41 7.66 6.38 -40.82 -0.26 7.40 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -30.86 369.60 -10.83 -41.69 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.72 Total: 4.48 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.11 Total: 0.27 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.16 Total: -58.91 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.48 Total: 0.51 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.86 -10.83 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942484273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.986 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds