Wall clock time and date at job start Tue Mar 31 2020 19:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.52652 * 2 1 4 4 C 1.53200 * 109.49461 * 120.07677 * 2 1 3 5 5 N 1.46927 * 108.77067 * 174.58947 * 4 2 1 6 6 C 1.36943 * 120.63029 * 126.41629 * 5 4 2 7 7 H 1.08006 * 119.99758 * 207.65449 * 6 5 4 8 8 C 1.38809 * 120.00002 * 27.65086 * 6 5 4 9 9 N 1.31622 * 120.00265 * 17.38237 * 8 6 5 10 10 Si 1.86800 * 120.00044 * 197.37714 * 8 6 5 11 11 H 1.48496 * 109.47139 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46803 * 120.00178 * 10 8 6 13 13 H 1.48495 * 109.47200 * 240.00164 * 10 8 6 14 14 C 1.46925 * 118.74259 * 306.38711 * 5 4 2 15 15 C 1.53196 * 108.77228 * 53.61332 * 14 5 4 16 16 C 1.53037 * 109.50055 * 239.91377 * 2 1 3 17 17 H 1.09003 * 109.44465 * 58.67264 * 16 2 1 18 18 N 1.46495 * 109.45947 * 298.70416 * 16 2 1 19 19 C 1.34776 * 119.99944 * 154.92967 * 18 16 2 20 20 O 1.21626 * 120.00288 * 359.97438 * 19 18 16 21 21 C 1.47257 * 120.00080 * 180.02562 * 19 18 16 22 22 N 1.29761 * 125.52744 * 359.97271 * 21 19 18 23 23 C 1.32594 * 116.75399 * 180.02562 * 22 21 19 24 24 C 1.34617 * 114.31287 * 0.04577 * 23 22 21 25 25 S 1.71628 * 109.60196 * 359.94000 * 24 23 22 26 26 C 1.51943 * 110.69035 * 179.72549 * 24 23 22 27 27 C 1.54096 * 104.91561 * 342.92716 * 26 24 23 28 28 C 1.52798 * 136.15630 * 180.12086 * 23 22 21 29 29 H 1.09007 * 109.47079 * 180.08508 * 1 2 3 30 30 H 1.09004 * 109.47493 * 300.08229 * 1 2 3 31 31 H 1.09001 * 109.47350 * 60.08665 * 1 2 3 32 32 H 1.08992 * 109.58937 * 54.80082 * 4 2 1 33 33 H 1.09000 * 109.58542 * 294.36732 * 4 2 1 34 34 H 0.96996 * 120.00329 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.58837 * 293.82943 * 14 5 4 36 36 H 1.08993 * 109.58985 * 173.39994 * 14 5 4 37 37 H 1.08999 * 109.49569 * 185.41896 * 15 14 5 38 38 H 1.08991 * 109.49898 * 65.31863 * 15 14 5 39 39 H 0.97003 * 120.00329 * 334.93085 * 18 16 2 40 40 H 1.08996 * 110.36378 * 101.75124 * 26 24 23 41 41 H 1.09003 * 110.36690 * 224.06639 * 26 24 23 42 42 H 1.09004 * 110.78849 * 268.16250 * 27 26 24 43 43 H 1.08993 * 111.09443 * 144.49565 * 27 26 24 44 44 H 1.09005 * 110.31159 * 316.45369 * 28 23 22 45 45 H 1.08997 * 110.31437 * 78.63098 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 1.2497 5 7 3.5045 -0.8290 1.1697 6 6 4.2935 -0.3791 2.1946 7 1 5.2989 -0.0399 1.9933 8 6 3.8009 -0.3590 3.4922 9 7 2.7374 -1.0691 3.8036 10 14 4.6476 0.6759 4.7967 11 1 5.8116 1.3750 4.1954 12 1 3.6910 1.6781 5.3313 13 1 5.1129 -0.2021 5.9002 14 6 4.1053 -1.4267 -0.0305 15 6 3.5709 -0.6950 -1.2658 16 6 2.0408 -0.7232 -1.2482 17 1 1.6582 -0.2244 -2.1387 18 7 1.5784 -2.1131 -1.2306 19 6 1.4490 -2.7950 -2.3859 20 8 1.7156 -2.2562 -3.4432 21 6 0.9836 -4.1920 -2.3682 22 7 0.6702 -4.8689 -1.3065 23 6 0.2709 -6.1196 -1.4923 24 6 0.2506 -6.5093 -2.7807 25 16 0.7634 -5.2134 -3.7823 26 6 -0.2110 -7.9522 -2.8979 27 6 -0.0576 -8.5342 -1.4794 28 6 -0.1887 -7.2735 -0.6023 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8908 32 1 1.6052 -1.7215 1.2982 33 1 1.7637 -0.1577 2.1390 34 1 2.3934 -1.0553 4.7105 35 1 3.8376 -2.4818 -0.0865 36 1 5.1895 -1.3246 0.0140 37 1 3.9335 -1.1898 -2.1668 38 1 3.9159 0.3388 -1.2540 39 1 1.3653 -2.5427 -0.3874 40 1 -1.2538 -7.9924 -3.2127 41 1 0.4196 -8.4963 -3.6011 42 1 0.9219 -8.9958 -1.3545 43 1 -0.8529 -9.2463 -1.2594 44 1 0.4538 -7.3540 0.2746 45 1 -1.2259 -7.1286 -0.3004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942484273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:02 Heat of formation + Delta-G solvation = 11.133459 kcal Electronic energy + Delta-G solvation = -27137.726035 eV Core-core repulsion = 23474.507955 eV Total energy + Delta-G solvation = -3663.218080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.68193 -40.97718 -39.18457 -36.93733 -35.98153 -33.75825 -33.56238 -31.49179 -29.72198 -29.40996 -27.55856 -27.15587 -26.10565 -23.96936 -22.93683 -22.56138 -21.75561 -20.56133 -20.08484 -19.16882 -18.72928 -18.01656 -17.03355 -16.93652 -16.66574 -16.28844 -15.74365 -15.58325 -15.32169 -15.04648 -14.87738 -14.76491 -14.46836 -14.29445 -14.20135 -13.75931 -13.63258 -13.10559 -12.99150 -12.95845 -12.80147 -12.59327 -12.52292 -12.27616 -12.16604 -12.13375 -11.91347 -11.81759 -11.74230 -11.59383 -11.44887 -11.16671 -10.83036 -10.56387 -10.49508 -10.14488 -9.60798 -8.68258 -7.87222 -5.32332 -0.82897 -0.04998 0.65538 1.15180 1.46161 1.48616 1.58816 2.03283 2.09705 2.51170 2.72541 3.27137 3.46773 3.55190 3.65239 3.79259 3.99098 4.02681 4.13709 4.15139 4.31191 4.39352 4.53176 4.55592 4.62742 4.70754 4.73240 4.79076 4.84016 4.87644 4.92739 4.98373 5.05323 5.08867 5.09291 5.17165 5.25899 5.29437 5.32509 5.44754 5.51402 5.64741 5.74455 6.24702 6.38832 6.49578 6.95042 7.14721 7.84314 8.36777 9.18807 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.003276 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.850781 B = 8545.965099 C = 9552.817503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.082 0.918 4 C 0.189 3.811 5 N -0.607 5.607 6 C -0.264 4.264 7 H 0.065 0.935 8 C -0.046 4.046 9 N -0.931 5.931 10 Si 0.965 3.035 11 H -0.269 1.269 12 H -0.289 1.289 13 H -0.294 1.294 14 C 0.148 3.852 15 C -0.134 4.134 16 C 0.163 3.837 17 H 0.090 0.910 18 N -0.683 5.683 19 C 0.598 3.402 20 O -0.559 6.559 21 C -0.044 4.044 22 N -0.439 5.439 23 C 0.002 3.998 24 C -0.255 4.255 25 S 0.278 5.722 26 C -0.036 4.036 27 C -0.106 4.106 28 C -0.046 4.046 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.068 0.932 32 H -0.002 1.002 33 H 0.059 0.941 34 H 0.250 0.750 35 H 0.005 0.995 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.409 0.591 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.076 0.924 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.231 -13.373 -14.839 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.100 0.900 4 C 0.063 3.937 5 N -0.330 5.330 6 C -0.394 4.394 7 H 0.082 0.918 8 C -0.242 4.242 9 N -0.576 5.576 10 Si 0.794 3.206 11 H -0.193 1.193 12 H -0.215 1.215 13 H -0.221 1.221 14 C 0.022 3.978 15 C -0.174 4.174 16 C 0.059 3.941 17 H 0.108 0.892 18 N -0.333 5.333 19 C 0.380 3.620 20 O -0.438 6.438 21 C -0.319 4.319 22 N -0.157 5.157 23 C -0.133 4.133 24 C -0.378 4.378 25 S 0.536 5.464 26 C -0.076 4.076 27 C -0.145 4.145 28 C -0.085 4.085 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.016 0.984 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.023 0.977 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.246 0.754 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.136 0.864 44 H 0.094 0.906 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.865 -12.478 -16.028 22.163 hybrid contribution 0.286 0.003 2.344 2.361 sum -8.579 -12.475 -13.685 20.408 Atomic orbital electron populations 1.21668 0.93761 1.01508 1.02124 1.21950 0.96454 1.00065 0.95078 0.89998 1.20583 0.82441 0.95612 0.95042 1.44306 1.02241 1.69857 1.16600 1.19520 0.98066 1.35055 0.86734 0.91757 1.25735 0.99430 1.00224 0.98781 1.70184 1.27048 1.41583 1.18831 0.85243 0.78101 0.78304 0.78991 1.19301 1.21519 1.22081 1.20901 0.96431 0.93739 0.86701 1.22262 0.95279 1.01875 0.97982 1.20983 0.94015 0.80245 0.98848 0.89211 1.45960 1.64718 1.14002 1.08663 1.16884 0.77488 0.83188 0.84398 1.90787 1.53006 1.69201 1.30829 1.27124 1.11861 1.00228 0.92637 1.65892 1.10538 1.07516 1.31728 1.22363 1.03724 0.91214 0.96034 1.27633 1.06378 1.05807 0.97994 1.83523 1.55786 0.99815 1.07306 1.20963 1.02972 0.83941 0.99722 1.22364 1.04732 0.95670 0.91686 1.21119 1.02157 0.88272 0.96976 0.93519 0.92414 0.91253 0.98434 0.92248 0.94091 0.97739 0.93056 0.91650 0.90374 0.75412 0.87204 0.88116 0.89978 0.86372 0.90568 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.05 71.98 0.65 -3.53 16 2 C -0.11 -4.24 2.67 -10.72 -0.03 -4.27 16 3 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 4 C 0.19 8.92 4.30 86.36 0.37 9.29 16 5 N -0.61 -30.61 2.99 -699.09 -2.09 -32.71 16 6 C -0.26 -14.57 9.59 84.03 0.81 -13.77 16 7 H 0.06 3.50 7.89 -2.91 -0.02 3.48 16 8 C -0.05 -2.56 4.91 84.86 0.42 -2.15 16 9 N -0.93 -54.62 11.19 21.65 0.24 -54.38 16 10 Si 0.97 44.92 29.59 68.60 2.03 46.95 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 14 C 0.15 6.47 6.26 86.36 0.54 7.01 16 15 C -0.13 -4.91 5.77 30.67 0.18 -4.73 16 16 C 0.16 5.74 2.21 45.02 0.10 5.84 16 17 H 0.09 3.00 7.57 -2.39 -0.02 2.98 16 18 N -0.68 -24.48 3.59 -445.84 -1.60 -26.08 16 19 C 0.60 21.07 7.77 86.61 0.67 21.74 16 20 O -0.56 -21.07 16.60 -4.11 -0.07 -21.13 16 21 C -0.04 -1.40 7.44 87.37 0.65 -0.75 16 22 N -0.44 -14.28 10.22 -175.37 -1.79 -16.07 16 23 C 0.00 0.06 7.62 42.29 0.32 0.38 16 24 C -0.25 -5.22 7.17 25.25 0.18 -5.04 16 25 S 0.28 6.56 23.03 -56.49 -1.30 5.26 16 26 C -0.04 -0.39 6.79 30.62 0.21 -0.19 16 27 C -0.11 -1.02 7.10 31.35 0.22 -0.80 16 28 C -0.05 -0.80 6.81 30.91 0.21 -0.59 16 29 H 0.05 1.50 7.54 -2.38 -0.02 1.48 16 30 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.00 -0.11 6.64 -2.39 -0.02 -0.13 16 33 H 0.06 3.19 6.04 -2.39 -0.01 3.18 16 34 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.00 0.21 7.74 -2.39 -0.02 0.20 16 36 H 0.05 2.22 7.93 -2.39 -0.02 2.20 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.41 15.80 6.38 -92.71 -0.59 15.21 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -68.61 369.60 1.33 -67.28 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.42 Total: 22.41 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 5.50 Total: 8.46 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -5.25 Total: -129.23 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.07 Total: -21.13 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 6.56 SS G_CDS: -1.30 Total: 5.26 kcal Total: -68.61 1.33 -67.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942484273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.415 kcal (2) G-P(sol) polarization free energy of solvation -68.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds