Wall clock time and date at job start Tue Mar 31 2020 19:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.49598 * 2 1 4 4 C 1.53194 * 109.52488 * 239.92045 * 2 1 3 5 5 N 1.46930 * 108.77347 * 185.39663 * 4 2 1 6 6 C 1.36939 * 120.62537 * 233.58636 * 5 4 2 7 7 H 1.08004 * 119.99742 * 152.61164 * 6 5 4 8 8 C 1.38806 * 120.00266 * 332.60382 * 6 5 4 9 9 N 1.31621 * 120.00120 * 159.32838 * 8 6 5 10 10 Si 1.86802 * 119.99900 * 339.32646 * 8 6 5 11 11 H 1.48502 * 109.47106 * 92.94492 * 10 8 6 12 12 H 1.48506 * 109.47071 * 212.94311 * 10 8 6 13 13 H 1.48496 * 109.46992 * 332.94118 * 10 8 6 14 14 C 1.46927 * 118.74108 * 53.60541 * 5 4 2 15 15 C 1.53166 * 108.76792 * 306.38957 * 14 5 4 16 16 C 1.53038 * 109.49807 * 120.06222 * 2 1 3 17 17 H 1.08996 * 109.46008 * 301.35664 * 16 2 1 18 18 N 1.46496 * 109.46165 * 61.33323 * 16 2 1 19 19 C 1.34775 * 120.00274 * 205.02613 * 18 16 2 20 20 O 1.21636 * 119.99853 * 0.02562 * 19 18 16 21 21 C 1.47262 * 120.00118 * 180.26952 * 19 18 16 22 22 N 1.33563 * 123.14042 * 359.75557 * 21 19 18 23 23 C 1.28652 * 115.76405 * 179.97438 * 22 21 19 24 24 S 1.70772 * 110.55939 * 359.97438 * 23 22 21 25 25 C 1.35209 * 123.14040 * 179.45440 * 21 19 18 26 26 C 1.50697 * 125.58685 * 0.03244 * 25 21 19 27 27 C 1.53000 * 117.49932 * 188.74469 * 26 25 21 28 28 C 1.52995 * 117.50241 * 120.08398 * 26 25 21 29 29 H 1.08993 * 109.47625 * 299.93462 * 1 2 3 30 30 H 1.09001 * 109.47508 * 59.94136 * 1 2 3 31 31 H 1.09001 * 109.46884 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.58665 * 305.17973 * 4 2 1 33 33 H 1.08998 * 109.58826 * 65.61095 * 4 2 1 34 34 H 0.96998 * 120.00227 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.58545 * 66.18031 * 14 5 4 36 36 H 1.08996 * 109.58568 * 186.60624 * 14 5 4 37 37 H 1.08995 * 109.50177 * 294.68094 * 15 14 5 38 38 H 1.09000 * 109.47641 * 174.58769 * 15 14 5 39 39 H 0.96997 * 119.99788 * 25.02205 * 18 16 2 40 40 H 1.07994 * 124.71737 * 180.02562 * 23 22 21 41 41 H 1.09007 * 115.55093 * 334.41191 * 26 25 21 42 42 H 1.09005 * 117.49806 * 359.97438 * 27 26 25 43 43 H 1.09006 * 117.49744 * 145.01619 * 27 26 25 44 44 H 1.08991 * 117.50113 * 214.97642 * 28 26 25 45 45 H 1.09004 * 117.50037 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2494 5 7 3.5053 -0.8283 -1.1689 6 6 4.2942 -0.3781 -2.1937 7 1 5.3010 -0.0424 -1.9928 8 6 3.8002 -0.3533 -3.4906 9 7 4.3582 0.4262 -4.3926 10 14 2.3436 -1.4262 -3.9559 11 1 1.0868 -0.6519 -3.7940 12 1 2.4794 -1.8593 -5.3699 13 1 2.3066 -2.6203 -3.0739 14 6 4.1060 -1.4254 0.0316 15 6 3.5708 -0.6938 1.2663 16 6 2.0407 -0.7227 1.2486 17 1 1.6578 -0.2240 2.1389 18 7 1.5790 -2.1129 1.2311 19 6 1.4504 -2.7949 2.3864 20 8 1.7173 -2.2559 3.4437 21 6 0.9920 -4.1942 2.3683 22 7 0.6824 -4.8466 1.2447 23 6 0.2978 -6.0653 1.3936 24 16 0.3002 -6.4973 3.0458 25 6 0.8508 -4.9403 3.4870 26 6 1.1307 -4.4748 4.8927 27 6 1.1069 -5.5270 6.0032 28 6 -0.0281 -4.5060 5.8912 29 1 -0.3634 0.5128 0.8905 30 1 -0.3634 0.5147 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6064 -1.7217 -1.2978 33 1 1.7644 -0.1580 -2.1388 34 1 4.0132 0.4433 -5.2990 35 1 3.8387 -2.4806 0.0877 36 1 5.1902 -1.3227 -0.0126 37 1 3.9154 0.3402 1.2543 38 1 3.9336 -1.1883 2.1674 39 1 1.3658 -2.5425 0.3880 40 1 0.0139 -6.7237 0.5861 41 1 1.8521 -3.6627 4.9842 42 1 0.8883 -6.5558 5.7171 43 1 1.8124 -5.4069 6.8255 44 1 -0.0689 -3.7148 6.6397 45 1 -0.9931 -4.8629 5.5313 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942823210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:36 Heat of formation + Delta-G solvation = 58.454737 kcal Electronic energy + Delta-G solvation = -27559.339188 eV Core-core repulsion = 23898.173113 eV Total energy + Delta-G solvation = -3661.166075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.74966 -39.27210 -37.69232 -37.38578 -34.34098 -32.38931 -31.88439 -30.77514 -30.12462 -26.64978 -25.97967 -25.08762 -23.16568 -22.73260 -22.36739 -22.05835 -20.90441 -19.87668 -18.90828 -18.30522 -17.13677 -16.66460 -16.15630 -15.56634 -15.45329 -15.03595 -14.71553 -14.42853 -14.40702 -14.07174 -13.86104 -13.54519 -13.34901 -13.17222 -12.73546 -12.39139 -12.24161 -12.17751 -11.92485 -11.89737 -11.50512 -11.34341 -11.31582 -11.16108 -10.89273 -10.65446 -10.48802 -10.21328 -10.05572 -10.01278 -9.70691 -9.67076 -9.56837 -9.44632 -9.10026 -8.67303 -8.59278 -6.95719 -5.94257 -3.29734 0.28409 0.94727 1.36999 1.89653 3.31492 3.31845 3.42887 3.48823 3.51928 3.63297 3.96863 4.22006 4.50777 4.53306 4.66858 4.85596 4.94435 4.97693 5.07868 5.26314 5.29555 5.32982 5.35891 5.48684 5.52691 5.66302 5.73262 5.74359 5.91023 5.94853 5.95324 6.04246 6.09711 6.21043 6.33915 6.41486 6.43122 6.64223 6.67751 6.72273 6.78258 6.96919 7.19911 7.77856 7.97011 8.33909 8.35382 8.94850 9.72837 10.10765 11.21781 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.003538 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.115526 B = 7912.924311 C = 8566.392521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 H 0.089 0.911 4 C 0.132 3.868 5 N -0.605 5.605 6 C -0.258 4.258 7 H 0.086 0.914 8 C 0.023 3.977 9 N -0.908 5.908 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.270 1.270 14 C 0.150 3.850 15 C -0.146 4.146 16 C 0.158 3.842 17 H 0.081 0.919 18 N -0.695 5.695 19 C 0.594 3.406 20 O -0.539 6.539 21 C 0.003 3.997 22 N -0.434 5.434 23 C -0.004 4.004 24 S 0.191 5.809 25 C -0.150 4.150 26 C -0.084 4.084 27 C -0.178 4.178 28 C -0.160 4.160 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.022 0.978 33 H 0.076 0.924 34 H 0.262 0.738 35 H 0.021 0.979 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.409 0.591 40 H 0.205 0.795 41 H 0.150 0.850 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.222 -13.678 18.629 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 H 0.108 0.892 4 C 0.006 3.994 5 N -0.328 5.328 6 C -0.386 4.386 7 H 0.103 0.897 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.710 3.290 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.195 1.195 14 C 0.024 3.976 15 C -0.186 4.186 16 C 0.054 3.946 17 H 0.099 0.901 18 N -0.346 5.346 19 C 0.377 3.623 20 O -0.417 6.417 21 C -0.131 4.131 22 N -0.147 5.147 23 C -0.303 4.303 24 S 0.448 5.552 25 C -0.274 4.274 26 C -0.105 4.105 27 C -0.216 4.216 28 C -0.198 4.198 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.247 0.753 40 H 0.221 0.779 41 H 0.167 0.833 42 H 0.113 0.887 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.204 -13.893 19.073 26.121 hybrid contribution -0.672 -0.006 -1.139 1.322 sum -11.876 -13.898 17.934 25.610 Atomic orbital electron populations 1.21788 0.95573 1.01494 1.01429 1.21959 0.94914 1.01089 0.95962 0.89225 1.21363 0.85058 0.96812 0.96155 1.44359 1.00500 1.70167 1.17758 1.18930 0.98571 1.35996 0.85134 0.89658 1.25274 0.97960 0.98662 0.95649 1.69838 1.43299 1.37894 1.04112 0.86993 0.82634 0.82555 0.76802 1.21594 1.23184 1.19473 1.20881 0.97117 0.94051 0.85522 1.22376 0.94673 1.02164 0.99375 1.20972 0.94625 0.80406 0.98553 0.90122 1.46021 1.65601 1.14011 1.08956 1.16959 0.77593 0.83344 0.84392 1.90714 1.51865 1.68661 1.30464 1.20438 1.07944 0.97631 0.87135 1.66990 1.11557 1.06740 1.29422 1.28346 1.05359 0.96284 1.00350 1.82726 1.58586 1.10536 1.03398 1.24797 1.04935 0.97916 0.99742 1.20710 1.03876 1.02542 0.83347 1.23173 1.02469 0.95094 1.00856 1.23074 0.93401 1.02012 1.01320 0.92962 0.92468 0.93063 0.96044 0.90600 0.92799 0.96077 0.91939 0.90823 0.92111 0.75340 0.77853 0.83265 0.88731 0.87596 0.87682 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.06 37.15 0.34 -1.85 16 2 C -0.12 -2.08 2.67 -90.50 -0.24 -2.33 16 3 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 4 C 0.13 2.84 3.19 -3.71 -0.01 2.82 16 5 N -0.60 -14.32 2.77 -172.34 -0.48 -14.80 16 6 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 7 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 8 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 9 N -0.91 -27.91 13.97 55.49 0.78 -27.14 16 10 Si 0.88 22.40 24.35 -169.99 -4.14 18.26 16 11 H -0.29 -7.04 6.62 56.52 0.37 -6.67 16 12 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 13 H -0.27 -6.77 6.64 56.52 0.38 -6.39 16 14 C 0.15 3.07 6.26 -3.72 -0.02 3.04 16 15 C -0.15 -2.57 5.77 -26.62 -0.15 -2.72 16 16 C 0.16 2.66 2.21 -67.89 -0.15 2.51 16 17 H 0.08 1.33 7.57 -51.93 -0.39 0.93 16 18 N -0.70 -11.49 3.59 -54.89 -0.20 -11.68 16 19 C 0.59 9.69 7.76 -12.59 -0.10 9.59 16 20 O -0.54 -9.40 13.82 5.25 0.07 -9.32 16 21 C 0.00 0.04 6.70 -84.53 -0.57 -0.52 16 22 N -0.43 -5.96 10.12 -12.36 -0.13 -6.09 16 23 C 0.00 -0.04 12.17 51.43 0.63 0.59 16 24 S 0.19 1.59 21.77 -107.50 -2.34 -0.75 16 25 C -0.15 -1.78 6.04 -35.39 -0.21 -2.00 16 26 C -0.08 -0.92 5.40 -91.78 -0.50 -1.42 16 27 C -0.18 -1.39 10.03 -26.69 -0.27 -1.66 16 28 C -0.16 -1.36 10.24 -26.70 -0.27 -1.64 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.76 7.54 -51.93 -0.39 0.37 16 32 H 0.02 0.47 5.57 -51.93 -0.29 0.18 16 33 H 0.08 1.80 4.50 -51.93 -0.23 1.57 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 36 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.41 7.05 6.25 -40.82 -0.26 6.80 16 40 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.15 1.94 6.17 -51.92 -0.32 1.62 16 42 H 0.09 0.64 7.28 -51.93 -0.38 0.27 16 43 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -32.38 363.64 -9.22 -41.60 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.49 Total: 6.80 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -1.77 Total: -2.36 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.02 Total: -59.70 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.14 Total: 18.26 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.34 Total: -0.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.38 -9.22 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942823210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.056 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds