Wall clock time and date at job start Tue Mar 31 2020 19:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.49598 * 2 1 4 4 C 1.53194 * 109.52488 * 239.92045 * 2 1 3 5 5 N 1.46930 * 108.77347 * 185.39663 * 4 2 1 6 6 C 1.36939 * 120.62537 * 233.58636 * 5 4 2 7 7 H 1.08004 * 119.99742 * 152.61164 * 6 5 4 8 8 C 1.38806 * 120.00266 * 332.60382 * 6 5 4 9 9 N 1.31621 * 120.00120 * 159.32838 * 8 6 5 10 10 Si 1.86802 * 119.99900 * 339.32646 * 8 6 5 11 11 H 1.48502 * 109.47106 * 92.94492 * 10 8 6 12 12 H 1.48506 * 109.47071 * 212.94311 * 10 8 6 13 13 H 1.48496 * 109.46992 * 332.94118 * 10 8 6 14 14 C 1.46927 * 118.74108 * 53.60541 * 5 4 2 15 15 C 1.53166 * 108.76792 * 306.38957 * 14 5 4 16 16 C 1.53038 * 109.49807 * 120.06222 * 2 1 3 17 17 H 1.08996 * 109.46008 * 301.35664 * 16 2 1 18 18 N 1.46496 * 109.46165 * 61.33323 * 16 2 1 19 19 C 1.34775 * 120.00274 * 205.02613 * 18 16 2 20 20 O 1.21636 * 119.99853 * 0.02562 * 19 18 16 21 21 C 1.47262 * 120.00118 * 180.26952 * 19 18 16 22 22 N 1.33563 * 123.14042 * 359.75557 * 21 19 18 23 23 C 1.28652 * 115.76405 * 179.97438 * 22 21 19 24 24 S 1.70772 * 110.55939 * 359.97438 * 23 22 21 25 25 C 1.35209 * 123.14040 * 179.45440 * 21 19 18 26 26 C 1.50697 * 125.58685 * 0.03244 * 25 21 19 27 27 C 1.53000 * 117.49932 * 188.74469 * 26 25 21 28 28 C 1.52995 * 117.50241 * 120.08398 * 26 25 21 29 29 H 1.08993 * 109.47625 * 299.93462 * 1 2 3 30 30 H 1.09001 * 109.47508 * 59.94136 * 1 2 3 31 31 H 1.09001 * 109.46884 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.58665 * 305.17973 * 4 2 1 33 33 H 1.08998 * 109.58826 * 65.61095 * 4 2 1 34 34 H 0.96998 * 120.00227 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.58545 * 66.18031 * 14 5 4 36 36 H 1.08996 * 109.58568 * 186.60624 * 14 5 4 37 37 H 1.08995 * 109.50177 * 294.68094 * 15 14 5 38 38 H 1.09000 * 109.47641 * 174.58769 * 15 14 5 39 39 H 0.96997 * 119.99788 * 25.02205 * 18 16 2 40 40 H 1.07994 * 124.71737 * 180.02562 * 23 22 21 41 41 H 1.09007 * 115.55093 * 334.41191 * 26 25 21 42 42 H 1.09005 * 117.49806 * 359.97438 * 27 26 25 43 43 H 1.09006 * 117.49744 * 145.01619 * 27 26 25 44 44 H 1.08991 * 117.50113 * 214.97642 * 28 26 25 45 45 H 1.09004 * 117.50037 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2494 5 7 3.5053 -0.8283 -1.1689 6 6 4.2942 -0.3781 -2.1937 7 1 5.3010 -0.0424 -1.9928 8 6 3.8002 -0.3533 -3.4906 9 7 4.3582 0.4262 -4.3926 10 14 2.3436 -1.4262 -3.9559 11 1 1.0868 -0.6519 -3.7940 12 1 2.4794 -1.8593 -5.3699 13 1 2.3066 -2.6203 -3.0739 14 6 4.1060 -1.4254 0.0316 15 6 3.5708 -0.6938 1.2663 16 6 2.0407 -0.7227 1.2486 17 1 1.6578 -0.2240 2.1389 18 7 1.5790 -2.1129 1.2311 19 6 1.4504 -2.7949 2.3864 20 8 1.7173 -2.2559 3.4437 21 6 0.9920 -4.1942 2.3683 22 7 0.6824 -4.8466 1.2447 23 6 0.2978 -6.0653 1.3936 24 16 0.3002 -6.4973 3.0458 25 6 0.8508 -4.9403 3.4870 26 6 1.1307 -4.4748 4.8927 27 6 1.1069 -5.5270 6.0032 28 6 -0.0281 -4.5060 5.8912 29 1 -0.3634 0.5128 0.8905 30 1 -0.3634 0.5147 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6064 -1.7217 -1.2978 33 1 1.7644 -0.1580 -2.1388 34 1 4.0132 0.4433 -5.2990 35 1 3.8387 -2.4806 0.0877 36 1 5.1902 -1.3227 -0.0126 37 1 3.9154 0.3402 1.2543 38 1 3.9336 -1.1883 2.1674 39 1 1.3658 -2.5425 0.3880 40 1 0.0139 -6.7237 0.5861 41 1 1.8521 -3.6627 4.9842 42 1 0.8883 -6.5558 5.7171 43 1 1.8124 -5.4069 6.8255 44 1 -0.0689 -3.7148 6.6397 45 1 -0.9931 -4.8629 5.5313 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942823210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:35 Heat of formation + Delta-G solvation = 37.481010 kcal Electronic energy + Delta-G solvation = -27560.248677 eV Core-core repulsion = 23898.173113 eV Total energy + Delta-G solvation = -3662.075564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.81724 -40.50542 -38.97223 -38.17678 -36.04057 -33.91298 -33.68401 -32.10094 -31.36098 -27.84692 -27.51088 -26.60648 -24.49730 -23.69126 -23.30460 -22.97881 -22.54240 -21.00417 -20.37516 -19.18919 -18.88322 -17.86617 -17.41174 -16.90732 -16.62824 -16.43810 -16.00576 -15.62714 -15.50161 -15.29838 -15.08336 -14.98126 -14.89443 -14.53475 -14.40280 -13.93876 -13.58408 -13.15223 -13.11027 -13.04623 -13.01513 -12.65715 -12.51010 -12.36405 -12.13627 -12.07927 -11.99131 -11.70974 -11.62829 -11.56643 -11.32452 -10.94542 -10.71750 -10.67035 -10.27057 -10.15323 -9.77763 -8.95583 -8.18038 -5.50226 -0.53152 0.21138 0.59266 0.94288 1.27781 1.39941 1.48957 2.20256 2.30607 2.39707 2.91154 3.02369 3.13334 3.29245 3.44602 3.64561 3.77549 3.90976 3.98052 4.02594 4.06059 4.18320 4.22571 4.36793 4.49622 4.53670 4.57442 4.61542 4.68480 4.77249 4.82688 4.86393 4.94774 4.96739 4.98460 5.04794 5.15521 5.16389 5.19020 5.24887 5.33516 5.54704 5.84684 6.10911 6.29650 6.60091 6.88328 7.13609 7.59127 8.00091 9.01809 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.003538 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.115526 B = 7912.924311 C = 8566.392521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 H 0.084 0.916 4 C 0.131 3.869 5 N -0.616 5.616 6 C -0.249 4.249 7 H 0.052 0.948 8 C -0.032 4.032 9 N -0.955 5.955 10 Si 0.943 3.057 11 H -0.271 1.271 12 H -0.311 1.311 13 H -0.263 1.263 14 C 0.151 3.849 15 C -0.135 4.135 16 C 0.166 3.834 17 H 0.090 0.910 18 N -0.697 5.697 19 C 0.591 3.409 20 O -0.558 6.558 21 C -0.032 4.032 22 N -0.471 5.471 23 C -0.012 4.012 24 S 0.282 5.718 25 C -0.162 4.162 26 C -0.115 4.115 27 C -0.157 4.157 28 C -0.154 4.154 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.028 0.972 33 H 0.054 0.946 34 H 0.262 0.738 35 H 0.023 0.977 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.406 0.594 40 H 0.236 0.764 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.784 -16.295 20.671 29.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 H 0.102 0.898 4 C 0.006 3.994 5 N -0.340 5.340 6 C -0.379 4.379 7 H 0.070 0.930 8 C -0.226 4.226 9 N -0.601 5.601 10 Si 0.772 3.228 11 H -0.197 1.197 12 H -0.239 1.239 13 H -0.188 1.188 14 C 0.026 3.974 15 C -0.175 4.175 16 C 0.061 3.939 17 H 0.108 0.892 18 N -0.347 5.347 19 C 0.376 3.624 20 O -0.438 6.438 21 C -0.166 4.166 22 N -0.186 5.186 23 C -0.311 4.311 24 S 0.539 5.461 25 C -0.286 4.286 26 C -0.135 4.135 27 C -0.195 4.195 28 C -0.192 4.192 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.243 0.757 40 H 0.252 0.748 41 H 0.139 0.861 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.128 0.872 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.794 -16.535 21.162 30.191 hybrid contribution 0.183 0.718 -1.634 1.794 sum -13.611 -15.817 19.529 28.580 Atomic orbital electron populations 1.21735 0.93205 1.02075 1.02589 1.21823 0.96815 1.00172 0.94215 0.89784 1.21379 0.83583 0.97198 0.97229 1.44439 1.01375 1.70578 1.17568 1.18859 0.97842 1.34726 0.86458 0.93016 1.25867 1.01306 0.99865 0.95609 1.69962 1.45793 1.39847 1.04525 0.85964 0.80185 0.80861 0.75809 1.19717 1.23942 1.18786 1.20930 0.96655 0.94309 0.85461 1.22242 0.95606 1.01657 0.97967 1.20842 0.93652 0.81031 0.98354 0.89234 1.45973 1.65998 1.13697 1.09060 1.17312 0.76950 0.84327 0.83802 1.90697 1.52697 1.69486 1.30893 1.20224 1.10819 0.97102 0.88484 1.66964 1.13393 1.08445 1.29766 1.28946 1.03844 0.95636 1.02644 1.82352 1.56047 1.06730 1.00989 1.25129 1.03987 0.99911 0.99604 1.20615 1.05148 1.03763 0.83998 1.23297 1.01802 0.95076 0.99285 1.23175 0.93393 1.02456 1.00172 0.90973 0.92164 0.92757 0.95419 0.92750 0.92902 0.95869 0.92856 0.90923 0.91364 0.75718 0.74777 0.86101 0.87213 0.86415 0.87230 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.06 71.98 0.65 -3.24 16 2 C -0.11 -3.74 2.67 -10.72 -0.03 -3.77 16 3 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16 4 C 0.13 5.55 3.19 86.36 0.28 5.83 16 5 N -0.62 -29.47 2.77 -699.15 -1.94 -31.40 16 6 C -0.25 -14.37 10.03 84.03 0.84 -13.53 16 7 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 8 C -0.03 -1.87 5.23 84.86 0.44 -1.42 16 9 N -0.96 -60.53 13.97 21.65 0.30 -60.23 16 10 Si 0.94 46.92 24.35 68.60 1.67 48.59 16 11 H -0.27 -12.59 6.62 99.48 0.66 -11.93 16 12 H -0.31 -15.70 7.11 99.48 0.71 -15.00 16 13 H -0.26 -12.67 6.64 99.48 0.66 -12.01 16 14 C 0.15 6.25 6.26 86.35 0.54 6.79 16 15 C -0.13 -4.72 5.77 30.67 0.18 -4.54 16 16 C 0.17 5.41 2.21 45.02 0.10 5.51 16 17 H 0.09 2.83 7.57 -2.39 -0.02 2.81 16 18 N -0.70 -22.54 3.59 -445.82 -1.60 -24.14 16 19 C 0.59 19.06 7.76 86.62 0.67 19.73 16 20 O -0.56 -19.46 13.82 -4.14 -0.06 -19.51 16 21 C -0.03 -0.90 6.70 40.56 0.27 -0.63 16 22 N -0.47 -12.24 10.12 -193.03 -1.95 -14.20 16 23 C -0.01 -0.20 12.17 130.71 1.59 1.39 16 24 S 0.28 3.71 21.77 -56.49 -1.23 2.48 16 25 C -0.16 -3.56 6.04 24.99 0.15 -3.41 16 26 C -0.11 -2.34 5.40 -11.54 -0.06 -2.40 16 27 C -0.16 -2.00 10.03 30.62 0.31 -1.69 16 28 C -0.15 -2.26 10.24 30.62 0.31 -1.95 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.50 7.54 -2.39 -0.02 1.48 16 32 H 0.03 1.16 5.57 -2.39 -0.01 1.15 16 33 H 0.05 2.54 4.50 -2.39 -0.01 2.53 16 34 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.02 0.96 7.74 -2.39 -0.02 0.94 16 36 H 0.05 2.25 7.93 -2.39 -0.02 2.24 16 37 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.41 13.68 6.25 -92.71 -0.58 13.10 16 40 H 0.24 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.12 3.18 6.17 -2.38 -0.01 3.16 16 42 H 0.11 1.04 7.28 -2.38 -0.02 1.03 16 43 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -72.59 363.64 1.79 -70.80 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.34 Total: 24.94 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 6.25 Total: 2.66 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -5.19 Total: -129.96 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.06 Total: -19.51 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.67 Total: 48.59 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.23 Total: 2.48 kcal Total: -72.59 1.79 -70.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942823210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.282 kcal (2) G-P(sol) polarization free energy of solvation -72.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds