Wall clock time and date at job start Tue Mar 31 2020 19:33:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09001 * 109.50273 * 2 1
4 4 C 1.53192 * 109.49914 * 239.92974 * 2 1 3
5 5 N 1.46934 * 108.77534 * 185.41297 * 4 2 1
6 6 C 1.36936 * 120.63116 * 233.58649 * 5 4 2
7 7 H 1.07995 * 119.99991 * 27.68765 * 6 5 4
8 8 C 1.38813 * 119.99769 * 207.68021 * 6 5 4
9 9 N 1.31614 * 120.00156 * 17.38115 * 8 6 5
10 10 Si 1.86798 * 119.99757 * 197.38068 * 8 6 5
11 11 H 1.48501 * 109.47305 * 0.02562 * 10 8 6
12 12 H 1.48498 * 109.47097 * 120.00197 * 10 8 6
13 13 H 1.48501 * 109.47324 * 240.00404 * 10 8 6
14 14 C 1.46929 * 118.73528 * 53.61477 * 5 4 2
15 15 C 1.53199 * 108.77348 * 306.38746 * 14 5 4
16 16 C 1.53035 * 109.33724 * 54.62234 * 15 14 5
17 17 H 1.09000 * 109.43503 * 58.68927 * 16 15 14
18 18 N 1.46499 * 109.48495 * 178.64658 * 16 15 14
19 19 C 1.34779 * 119.99987 * 275.08539 * 18 16 15
20 20 O 1.21635 * 119.99733 * 0.02562 * 19 18 16
21 21 C 1.47268 * 120.00059 * 179.97438 * 19 18 16
22 22 N 1.33558 * 123.14398 * 0.02991 * 21 19 18
23 23 C 1.28644 * 115.77082 * 179.97438 * 22 21 19
24 24 S 1.70778 * 110.55531 * 0.02562 * 23 22 21
25 25 C 1.35207 * 123.14067 * 179.73140 * 21 19 18
26 26 C 1.50699 * 125.58368 * 0.02562 * 25 21 19
27 27 C 1.53004 * 117.49719 * 188.74676 * 26 25 21
28 28 C 1.53000 * 117.49830 * 120.08598 * 26 25 21
29 29 H 1.09004 * 109.47214 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.46978 * 60.00861 * 1 2 3
31 31 H 1.08994 * 109.47118 * 300.00461 * 1 2 3
32 32 H 1.09001 * 109.59088 * 305.20406 * 4 2 1
33 33 H 1.09001 * 109.58730 * 65.48964 * 4 2 1
34 34 H 0.97001 * 120.00168 * 179.97438 * 9 8 6
35 35 H 1.09000 * 109.58971 * 66.17795 * 14 5 4
36 36 H 1.08994 * 109.58199 * 186.60507 * 14 5 4
37 37 H 1.08994 * 109.49564 * 174.59247 * 15 14 5
38 38 H 1.09003 * 109.49759 * 294.65590 * 15 14 5
39 39 H 0.96998 * 120.00445 * 95.08383 * 18 16 15
40 40 H 1.07995 * 124.72146 * 180.02562 * 23 22 21
41 41 H 1.08995 * 115.55681 * 334.41025 * 26 25 21
42 42 H 1.09002 * 117.49691 * 359.97438 * 27 26 25
43 43 H 1.08998 * 117.50079 * 145.01935 * 27 26 25
44 44 H 1.08998 * 117.49852 * 214.97260 * 28 26 25
45 45 H 1.09000 * 117.49814 * 359.97438 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8939 1.0275 0.0000
4 6 2.0413 -0.7236 -1.2497
5 7 3.5047 -0.8289 -1.1697
6 6 4.2936 -0.3789 -2.1944
7 1 3.9468 0.4210 -2.8318
8 6 5.5393 -0.9507 -2.4139
9 7 5.8281 -2.1215 -1.8866
10 14 6.8057 -0.0585 -3.4577
11 1 6.2388 1.2302 -3.9299
12 1 8.0207 0.2039 -2.6452
13 1 7.1647 -0.9000 -4.6275
14 6 4.1053 -1.4268 0.0306
15 6 3.5708 -0.6953 1.2660
16 6 2.0407 -0.7227 1.2486
17 1 1.6966 -1.7569 1.2359
18 7 1.5264 -0.0522 2.4453
19 6 1.3983 -0.7371 3.5990
20 8 1.7101 -1.9118 3.6467
21 6 0.8817 -0.0629 4.8021
22 7 0.5214 1.2231 4.8206
23 6 0.0888 1.6665 5.9480
24 16 0.1074 0.4299 7.1257
25 6 0.7225 -0.6894 5.9896
26 6 1.0389 -2.1364 6.2670
27 6 0.5991 -2.7097 7.6157
28 6 2.0811 -2.4374 7.3459
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3633 0.5137 -0.8901
31 1 -0.3633 0.5139 0.8899
32 1 1.6052 -1.7214 -1.2984
33 1 1.7617 -0.1588 -2.1391
34 1 6.6985 -2.5213 -2.0402
35 1 3.8375 -2.4819 0.0863
36 1 5.1895 -1.3246 -0.0139
37 1 3.9333 -1.1902 2.1669
38 1 3.9163 0.3384 1.2546
39 1 1.2780 0.8847 2.4074
40 1 -0.2403 2.6797 6.1251
41 1 1.0034 -2.7996 5.4027
42 1 0.0813 -2.0401 8.3024
43 1 0.2747 -3.7500 7.6386
44 1 2.7310 -3.2988 7.1916
45 1 2.5383 -1.5888 7.8548
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000942823211.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:33:39
Heat of formation + Delta-G solvation = 50.238014 kcal
Electronic energy + Delta-G solvation = -26892.313949 eV
Core-core repulsion = 23230.791569 eV
Total energy + Delta-G solvation = -3661.522379 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.141 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.69215 -38.99883 -37.57957 -37.28851 -34.48789 -32.59228 -31.17200 -30.72571
-29.78296 -26.58170 -25.79205 -24.82045 -23.01641 -22.66042 -22.26744 -21.54470
-20.90069 -19.87027 -19.03286 -18.30361 -17.05462 -16.56676 -15.98469 -15.71160
-15.29605 -14.88364 -14.69855 -14.41789 -14.05174 -13.92769 -13.78524 -13.44768
-13.15896 -12.76906 -12.63759 -12.34804 -12.23735 -12.03677 -11.87222 -11.44019
-11.31887 -11.26313 -11.04953 -10.90103 -10.75213 -10.60370 -10.30096 -10.18501
-10.09619 -9.96092 -9.76437 -9.74877 -9.58633 -9.41822 -9.09046 -8.60891
-8.37998 -6.65905 -5.75966 -3.18285 0.26864 0.92110 1.34734 1.88010
3.38187 3.38344 3.42050 3.47022 3.49193 3.66941 3.94421 4.24021
4.51591 4.53724 4.70743 4.83564 4.99216 5.18296 5.28510 5.31987
5.35813 5.44149 5.56688 5.57650 5.64627 5.69419 5.79166 5.95145
6.02077 6.04292 6.16073 6.29761 6.33227 6.45131 6.50704 6.65476
6.71347 6.82053 6.96566 7.00233 7.16906 7.41072 7.70461 7.81639
7.82636 8.41120 8.47469 9.23556 9.87104 10.43694 11.32555
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.019119 B = 0.002758 C = 0.002611
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1464.153623 B =10149.534946 C =10720.212994
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.114 4.114
3 H 0.071 0.929
4 C 0.156 3.844
5 N -0.593 5.593
6 C -0.252 4.252
7 H 0.066 0.934
8 C 0.002 3.998
9 N -0.901 5.901
10 Si 0.901 3.099
11 H -0.278 1.278
12 H -0.289 1.289
13 H -0.290 1.290
14 C 0.174 3.826
15 C -0.147 4.147
16 C 0.157 3.843
17 H 0.083 0.917
18 N -0.702 5.702
19 C 0.590 3.410
20 O -0.531 6.531
21 C 0.002 3.998
22 N -0.435 5.435
23 C -0.008 4.008
24 S 0.192 5.808
25 C -0.148 4.148
26 C -0.087 4.087
27 C -0.178 4.178
28 C -0.159 4.159
29 H 0.051 0.949
30 H 0.054 0.946
31 H 0.047 0.953
32 H 0.020 0.980
33 H 0.058 0.942
34 H 0.253 0.747
35 H 0.021 0.979
36 H 0.090 0.910
37 H 0.053 0.947
38 H 0.055 0.945
39 H 0.403 0.597
40 H 0.204 0.796
41 H 0.151 0.849
42 H 0.094 0.906
43 H 0.106 0.894
44 H 0.106 0.894
45 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.836 5.185 20.922 25.613
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.135 4.135
3 H 0.090 0.910
4 C 0.028 3.972
5 N -0.315 5.315
6 C -0.382 4.382
7 H 0.084 0.916
8 C -0.197 4.197
9 N -0.545 5.545
10 Si 0.731 3.269
11 H -0.203 1.203
12 H -0.216 1.216
13 H -0.218 1.218
14 C 0.048 3.952
15 C -0.187 4.187
16 C 0.054 3.946
17 H 0.101 0.899
18 N -0.351 5.351
19 C 0.373 3.627
20 O -0.409 6.409
21 C -0.132 4.132
22 N -0.149 5.149
23 C -0.307 4.307
24 S 0.448 5.552
25 C -0.272 4.272
26 C -0.107 4.107
27 C -0.216 4.216
28 C -0.197 4.197
29 H 0.070 0.930
30 H 0.073 0.927
31 H 0.066 0.934
32 H 0.038 0.962
33 H 0.076 0.924
34 H 0.063 0.937
35 H 0.039 0.961
36 H 0.108 0.892
37 H 0.072 0.928
38 H 0.073 0.927
39 H 0.238 0.762
40 H 0.221 0.779
41 H 0.168 0.832
42 H 0.112 0.888
43 H 0.124 0.876
44 H 0.125 0.875
45 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -13.701 4.644 21.421 25.848
hybrid contribution 0.891 0.726 -1.268 1.711
sum -12.810 5.370 20.153 24.476
Atomic orbital electron populations
1.21772 0.95796 1.01518 1.00920 1.21968 0.94547 1.00657 0.96365
0.91022 1.20885 0.85940 0.96602 0.93729 1.44116 0.99305 1.71434
1.16642 1.19215 0.98187 1.12279 1.08524 0.91598 1.25042 0.99922
0.95387 0.99320 1.70047 1.21821 1.14605 1.48048 0.86243 0.81743
0.79236 0.79662 1.20274 1.21593 1.21750 1.20760 0.99425 0.93061
0.81945 1.22581 0.93792 1.01589 1.00776 1.21114 0.94622 0.96834
0.82051 0.89912 1.46126 1.64417 1.14739 1.09848 1.16987 0.78080
0.85787 0.81808 1.90756 1.50686 1.15293 1.84134 1.20490 1.07437
0.89503 0.95745 1.66961 1.11214 1.11413 1.25293 1.28306 1.05486
1.05167 0.91759 1.82745 1.56970 1.00512 1.14988 1.24822 1.04497
1.01106 0.96789 1.20734 1.04881 0.89724 0.95367 1.23173 0.98028
1.02656 0.97748 1.23088 0.92008 1.03842 1.00745 0.92954 0.92732
0.93373 0.96194 0.92379 0.93668 0.96132 0.89221 0.92786 0.92651
0.76197 0.77914 0.83205 0.88789 0.87578 0.87524 0.88675
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.04 9.02 37.16 0.34 -1.70 16
2 C -0.11 -1.99 2.46 -90.50 -0.22 -2.21 16
3 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
4 C 0.16 3.27 5.80 -3.71 -0.02 3.25 16
5 N -0.59 -15.00 3.00 -172.31 -0.52 -15.51 16
6 C -0.25 -6.97 9.59 -15.06 -0.14 -7.11 16
7 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16
8 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16
9 N -0.90 -26.51 11.19 55.49 0.62 -25.89 16
10 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16
11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
14 C 0.17 4.32 5.31 -3.70 -0.02 4.30 16
15 C -0.15 -3.04 5.65 -26.61 -0.15 -3.19 16
16 C 0.16 2.86 1.88 -67.89 -0.13 2.74 16
17 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16
18 N -0.70 -11.22 4.36 -54.89 -0.24 -11.45 16
19 C 0.59 9.78 7.76 -12.59 -0.10 9.68 16
20 O -0.53 -10.04 13.82 5.25 0.07 -9.97 16
21 C 0.00 0.03 6.70 -84.53 -0.57 -0.53 16
22 N -0.43 -5.33 10.12 -12.36 -0.13 -5.45 16
23 C -0.01 -0.07 12.17 51.43 0.63 0.56 16
24 S 0.19 1.49 21.77 -107.50 -2.34 -0.85 16
25 C -0.15 -1.75 6.04 -35.39 -0.21 -1.96 16
26 C -0.09 -0.99 5.40 -91.77 -0.50 -1.48 16
27 C -0.18 -1.45 10.04 -26.69 -0.27 -1.72 16
28 C -0.16 -1.48 10.24 -26.69 -0.27 -1.75 16
29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
31 H 0.05 0.64 7.36 -51.93 -0.38 0.25 16
32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
33 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16
34 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16
35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
36 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16
37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16
38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16
39 H 0.40 5.86 7.83 -40.82 -0.32 5.54 16
40 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16
41 H 0.15 2.06 6.17 -51.93 -0.32 1.74 16
42 H 0.09 0.65 7.28 -51.93 -0.38 0.27 16
43 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16
44 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16
45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
LS Contribution 373.99 15.07 5.64 5.64
Total: -1.00 -31.94 373.99 -10.36 -42.31
By element:
Atomic # 1 Polarization: 12.24 SS G_CDS: -6.72 Total: 5.52 kcal
Atomic # 6 Polarization: 0.54 SS G_CDS: -1.72 Total: -1.18 kcal
Atomic # 7 Polarization: -58.05 SS G_CDS: -0.26 Total: -58.31 kcal
Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal
Atomic # 16 Polarization: 1.49 SS G_CDS: -2.34 Total: -0.85 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -31.94 -10.36 -42.31 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000942823211.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.543 kcal
(2) G-P(sol) polarization free energy of solvation -31.941 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.602 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.238 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds