Wall clock time and date at job start Tue Mar 31 2020 19:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.50273 * 2 1 4 4 C 1.53192 * 109.49914 * 239.92974 * 2 1 3 5 5 N 1.46934 * 108.77534 * 185.41297 * 4 2 1 6 6 C 1.36936 * 120.63116 * 233.58649 * 5 4 2 7 7 H 1.07995 * 119.99991 * 27.68765 * 6 5 4 8 8 C 1.38813 * 119.99769 * 207.68021 * 6 5 4 9 9 N 1.31614 * 120.00156 * 17.38115 * 8 6 5 10 10 Si 1.86798 * 119.99757 * 197.38068 * 8 6 5 11 11 H 1.48501 * 109.47305 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47097 * 120.00197 * 10 8 6 13 13 H 1.48501 * 109.47324 * 240.00404 * 10 8 6 14 14 C 1.46929 * 118.73528 * 53.61477 * 5 4 2 15 15 C 1.53199 * 108.77348 * 306.38746 * 14 5 4 16 16 C 1.53035 * 109.33724 * 54.62234 * 15 14 5 17 17 H 1.09000 * 109.43503 * 58.68927 * 16 15 14 18 18 N 1.46499 * 109.48495 * 178.64658 * 16 15 14 19 19 C 1.34779 * 119.99987 * 275.08539 * 18 16 15 20 20 O 1.21635 * 119.99733 * 0.02562 * 19 18 16 21 21 C 1.47268 * 120.00059 * 179.97438 * 19 18 16 22 22 N 1.33558 * 123.14398 * 0.02991 * 21 19 18 23 23 C 1.28644 * 115.77082 * 179.97438 * 22 21 19 24 24 S 1.70778 * 110.55531 * 0.02562 * 23 22 21 25 25 C 1.35207 * 123.14067 * 179.73140 * 21 19 18 26 26 C 1.50699 * 125.58368 * 0.02562 * 25 21 19 27 27 C 1.53004 * 117.49719 * 188.74676 * 26 25 21 28 28 C 1.53000 * 117.49830 * 120.08598 * 26 25 21 29 29 H 1.09004 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46978 * 60.00861 * 1 2 3 31 31 H 1.08994 * 109.47118 * 300.00461 * 1 2 3 32 32 H 1.09001 * 109.59088 * 305.20406 * 4 2 1 33 33 H 1.09001 * 109.58730 * 65.48964 * 4 2 1 34 34 H 0.97001 * 120.00168 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.58971 * 66.17795 * 14 5 4 36 36 H 1.08994 * 109.58199 * 186.60507 * 14 5 4 37 37 H 1.08994 * 109.49564 * 174.59247 * 15 14 5 38 38 H 1.09003 * 109.49759 * 294.65590 * 15 14 5 39 39 H 0.96998 * 120.00445 * 95.08383 * 18 16 15 40 40 H 1.07995 * 124.72146 * 180.02562 * 23 22 21 41 41 H 1.08995 * 115.55681 * 334.41025 * 26 25 21 42 42 H 1.09002 * 117.49691 * 359.97438 * 27 26 25 43 43 H 1.08998 * 117.50079 * 145.01935 * 27 26 25 44 44 H 1.08998 * 117.49852 * 214.97260 * 28 26 25 45 45 H 1.09000 * 117.49814 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5047 -0.8289 -1.1697 6 6 4.2936 -0.3789 -2.1944 7 1 3.9468 0.4210 -2.8318 8 6 5.5393 -0.9507 -2.4139 9 7 5.8281 -2.1215 -1.8866 10 14 6.8057 -0.0585 -3.4577 11 1 6.2388 1.2302 -3.9299 12 1 8.0207 0.2039 -2.6452 13 1 7.1647 -0.9000 -4.6275 14 6 4.1053 -1.4268 0.0306 15 6 3.5708 -0.6953 1.2660 16 6 2.0407 -0.7227 1.2486 17 1 1.6966 -1.7569 1.2359 18 7 1.5264 -0.0522 2.4453 19 6 1.3983 -0.7371 3.5990 20 8 1.7101 -1.9118 3.6467 21 6 0.8817 -0.0629 4.8021 22 7 0.5214 1.2231 4.8206 23 6 0.0888 1.6665 5.9480 24 16 0.1074 0.4299 7.1257 25 6 0.7225 -0.6894 5.9896 26 6 1.0389 -2.1364 6.2670 27 6 0.5991 -2.7097 7.6157 28 6 2.0811 -2.4374 7.3459 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 1.6052 -1.7214 -1.2984 33 1 1.7617 -0.1588 -2.1391 34 1 6.6985 -2.5213 -2.0402 35 1 3.8375 -2.4819 0.0863 36 1 5.1895 -1.3246 -0.0139 37 1 3.9333 -1.1902 2.1669 38 1 3.9163 0.3384 1.2546 39 1 1.2780 0.8847 2.4074 40 1 -0.2403 2.6797 6.1251 41 1 1.0034 -2.7996 5.4027 42 1 0.0813 -2.0401 8.3024 43 1 0.2747 -3.7500 7.6386 44 1 2.7310 -3.2988 7.1916 45 1 2.5383 -1.5888 7.8548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942823211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:39 Heat of formation + Delta-G solvation = 50.238014 kcal Electronic energy + Delta-G solvation = -26892.313949 eV Core-core repulsion = 23230.791569 eV Total energy + Delta-G solvation = -3661.522379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69215 -38.99883 -37.57957 -37.28851 -34.48789 -32.59228 -31.17200 -30.72571 -29.78296 -26.58170 -25.79205 -24.82045 -23.01641 -22.66042 -22.26744 -21.54470 -20.90069 -19.87027 -19.03286 -18.30361 -17.05462 -16.56676 -15.98469 -15.71160 -15.29605 -14.88364 -14.69855 -14.41789 -14.05174 -13.92769 -13.78524 -13.44768 -13.15896 -12.76906 -12.63759 -12.34804 -12.23735 -12.03677 -11.87222 -11.44019 -11.31887 -11.26313 -11.04953 -10.90103 -10.75213 -10.60370 -10.30096 -10.18501 -10.09619 -9.96092 -9.76437 -9.74877 -9.58633 -9.41822 -9.09046 -8.60891 -8.37998 -6.65905 -5.75966 -3.18285 0.26864 0.92110 1.34734 1.88010 3.38187 3.38344 3.42050 3.47022 3.49193 3.66941 3.94421 4.24021 4.51591 4.53724 4.70743 4.83564 4.99216 5.18296 5.28510 5.31987 5.35813 5.44149 5.56688 5.57650 5.64627 5.69419 5.79166 5.95145 6.02077 6.04292 6.16073 6.29761 6.33227 6.45131 6.50704 6.65476 6.71347 6.82053 6.96566 7.00233 7.16906 7.41072 7.70461 7.81639 7.82636 8.41120 8.47469 9.23556 9.87104 10.43694 11.32555 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019119 B = 0.002758 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.153623 B =10149.534946 C =10720.212994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 H 0.071 0.929 4 C 0.156 3.844 5 N -0.593 5.593 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.174 3.826 15 C -0.147 4.147 16 C 0.157 3.843 17 H 0.083 0.917 18 N -0.702 5.702 19 C 0.590 3.410 20 O -0.531 6.531 21 C 0.002 3.998 22 N -0.435 5.435 23 C -0.008 4.008 24 S 0.192 5.808 25 C -0.148 4.148 26 C -0.087 4.087 27 C -0.178 4.178 28 C -0.159 4.159 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.253 0.747 35 H 0.021 0.979 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.403 0.597 40 H 0.204 0.796 41 H 0.151 0.849 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 5.185 20.922 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.382 4.382 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.048 3.952 15 C -0.187 4.187 16 C 0.054 3.946 17 H 0.101 0.899 18 N -0.351 5.351 19 C 0.373 3.627 20 O -0.409 6.409 21 C -0.132 4.132 22 N -0.149 5.149 23 C -0.307 4.307 24 S 0.448 5.552 25 C -0.272 4.272 26 C -0.107 4.107 27 C -0.216 4.216 28 C -0.197 4.197 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.238 0.762 40 H 0.221 0.779 41 H 0.168 0.832 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.701 4.644 21.421 25.848 hybrid contribution 0.891 0.726 -1.268 1.711 sum -12.810 5.370 20.153 24.476 Atomic orbital electron populations 1.21772 0.95796 1.01518 1.00920 1.21968 0.94547 1.00657 0.96365 0.91022 1.20885 0.85940 0.96602 0.93729 1.44116 0.99305 1.71434 1.16642 1.19215 0.98187 1.12279 1.08524 0.91598 1.25042 0.99922 0.95387 0.99320 1.70047 1.21821 1.14605 1.48048 0.86243 0.81743 0.79236 0.79662 1.20274 1.21593 1.21750 1.20760 0.99425 0.93061 0.81945 1.22581 0.93792 1.01589 1.00776 1.21114 0.94622 0.96834 0.82051 0.89912 1.46126 1.64417 1.14739 1.09848 1.16987 0.78080 0.85787 0.81808 1.90756 1.50686 1.15293 1.84134 1.20490 1.07437 0.89503 0.95745 1.66961 1.11214 1.11413 1.25293 1.28306 1.05486 1.05167 0.91759 1.82745 1.56970 1.00512 1.14988 1.24822 1.04497 1.01106 0.96789 1.20734 1.04881 0.89724 0.95367 1.23173 0.98028 1.02656 0.97748 1.23088 0.92008 1.03842 1.00745 0.92954 0.92732 0.93373 0.96194 0.92379 0.93668 0.96132 0.89221 0.92786 0.92651 0.76197 0.77914 0.83205 0.88789 0.87578 0.87524 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.02 37.16 0.34 -1.70 16 2 C -0.11 -1.99 2.46 -90.50 -0.22 -2.21 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.16 3.27 5.80 -3.71 -0.02 3.25 16 5 N -0.59 -15.00 3.00 -172.31 -0.52 -15.51 16 6 C -0.25 -6.97 9.59 -15.06 -0.14 -7.11 16 7 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 8 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 9 N -0.90 -26.51 11.19 55.49 0.62 -25.89 16 10 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 C 0.17 4.32 5.31 -3.70 -0.02 4.30 16 15 C -0.15 -3.04 5.65 -26.61 -0.15 -3.19 16 16 C 0.16 2.86 1.88 -67.89 -0.13 2.74 16 17 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 18 N -0.70 -11.22 4.36 -54.89 -0.24 -11.45 16 19 C 0.59 9.78 7.76 -12.59 -0.10 9.68 16 20 O -0.53 -10.04 13.82 5.25 0.07 -9.97 16 21 C 0.00 0.03 6.70 -84.53 -0.57 -0.53 16 22 N -0.43 -5.33 10.12 -12.36 -0.13 -5.45 16 23 C -0.01 -0.07 12.17 51.43 0.63 0.56 16 24 S 0.19 1.49 21.77 -107.50 -2.34 -0.85 16 25 C -0.15 -1.75 6.04 -35.39 -0.21 -1.96 16 26 C -0.09 -0.99 5.40 -91.77 -0.50 -1.48 16 27 C -0.18 -1.45 10.04 -26.69 -0.27 -1.72 16 28 C -0.16 -1.48 10.24 -26.69 -0.27 -1.75 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.64 7.36 -51.93 -0.38 0.25 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16 34 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.40 5.86 7.83 -40.82 -0.32 5.54 16 40 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.15 2.06 6.17 -51.93 -0.32 1.74 16 42 H 0.09 0.65 7.28 -51.93 -0.38 0.27 16 43 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -31.94 373.99 -10.36 -42.31 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.72 Total: 5.52 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.72 Total: -1.18 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.26 Total: -58.31 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.34 Total: -0.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.94 -10.36 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942823211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.543 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds