Wall clock time and date at job start Tue Mar 31 2020 19:33:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09001 * 109.50273 * 2 1
4 4 C 1.53192 * 109.49914 * 239.92974 * 2 1 3
5 5 N 1.46934 * 108.77534 * 185.41297 * 4 2 1
6 6 C 1.36936 * 120.63116 * 233.58649 * 5 4 2
7 7 H 1.07995 * 119.99991 * 27.68765 * 6 5 4
8 8 C 1.38813 * 119.99769 * 207.68021 * 6 5 4
9 9 N 1.31614 * 120.00156 * 17.38115 * 8 6 5
10 10 Si 1.86798 * 119.99757 * 197.38068 * 8 6 5
11 11 H 1.48501 * 109.47305 * 0.02562 * 10 8 6
12 12 H 1.48498 * 109.47097 * 120.00197 * 10 8 6
13 13 H 1.48501 * 109.47324 * 240.00404 * 10 8 6
14 14 C 1.46929 * 118.73528 * 53.61477 * 5 4 2
15 15 C 1.53199 * 108.77348 * 306.38746 * 14 5 4
16 16 C 1.53035 * 109.33724 * 54.62234 * 15 14 5
17 17 H 1.09000 * 109.43503 * 58.68927 * 16 15 14
18 18 N 1.46499 * 109.48495 * 178.64658 * 16 15 14
19 19 C 1.34779 * 119.99987 * 275.08539 * 18 16 15
20 20 O 1.21635 * 119.99733 * 0.02562 * 19 18 16
21 21 C 1.47268 * 120.00059 * 179.97438 * 19 18 16
22 22 N 1.33558 * 123.14398 * 0.02991 * 21 19 18
23 23 C 1.28644 * 115.77082 * 179.97438 * 22 21 19
24 24 S 1.70778 * 110.55531 * 0.02562 * 23 22 21
25 25 C 1.35207 * 123.14067 * 179.73140 * 21 19 18
26 26 C 1.50699 * 125.58368 * 0.02562 * 25 21 19
27 27 C 1.53004 * 117.49719 * 188.74676 * 26 25 21
28 28 C 1.53000 * 117.49830 * 120.08598 * 26 25 21
29 29 H 1.09004 * 109.47214 * 180.02562 * 1 2 3
30 30 H 1.09005 * 109.46978 * 60.00861 * 1 2 3
31 31 H 1.08994 * 109.47118 * 300.00461 * 1 2 3
32 32 H 1.09001 * 109.59088 * 305.20406 * 4 2 1
33 33 H 1.09001 * 109.58730 * 65.48964 * 4 2 1
34 34 H 0.97001 * 120.00168 * 179.97438 * 9 8 6
35 35 H 1.09000 * 109.58971 * 66.17795 * 14 5 4
36 36 H 1.08994 * 109.58199 * 186.60507 * 14 5 4
37 37 H 1.08994 * 109.49564 * 174.59247 * 15 14 5
38 38 H 1.09003 * 109.49759 * 294.65590 * 15 14 5
39 39 H 0.96998 * 120.00445 * 95.08383 * 18 16 15
40 40 H 1.07995 * 124.72146 * 180.02562 * 23 22 21
41 41 H 1.08995 * 115.55681 * 334.41025 * 26 25 21
42 42 H 1.09002 * 117.49691 * 359.97438 * 27 26 25
43 43 H 1.08998 * 117.50079 * 145.01935 * 27 26 25
44 44 H 1.08998 * 117.49852 * 214.97260 * 28 26 25
45 45 H 1.09000 * 117.49814 * 359.97438 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8939 1.0275 0.0000
4 6 2.0413 -0.7236 -1.2497
5 7 3.5047 -0.8289 -1.1697
6 6 4.2936 -0.3789 -2.1944
7 1 3.9468 0.4210 -2.8318
8 6 5.5393 -0.9507 -2.4139
9 7 5.8281 -2.1215 -1.8866
10 14 6.8057 -0.0585 -3.4577
11 1 6.2388 1.2302 -3.9299
12 1 8.0207 0.2039 -2.6452
13 1 7.1647 -0.9000 -4.6275
14 6 4.1053 -1.4268 0.0306
15 6 3.5708 -0.6953 1.2660
16 6 2.0407 -0.7227 1.2486
17 1 1.6966 -1.7569 1.2359
18 7 1.5264 -0.0522 2.4453
19 6 1.3983 -0.7371 3.5990
20 8 1.7101 -1.9118 3.6467
21 6 0.8817 -0.0629 4.8021
22 7 0.5214 1.2231 4.8206
23 6 0.0888 1.6665 5.9480
24 16 0.1074 0.4299 7.1257
25 6 0.7225 -0.6894 5.9896
26 6 1.0389 -2.1364 6.2670
27 6 0.5991 -2.7097 7.6157
28 6 2.0811 -2.4374 7.3459
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3633 0.5137 -0.8901
31 1 -0.3633 0.5139 0.8899
32 1 1.6052 -1.7214 -1.2984
33 1 1.7617 -0.1588 -2.1391
34 1 6.6985 -2.5213 -2.0402
35 1 3.8375 -2.4819 0.0863
36 1 5.1895 -1.3246 -0.0139
37 1 3.9333 -1.1902 2.1669
38 1 3.9163 0.3384 1.2546
39 1 1.2780 0.8847 2.4074
40 1 -0.2403 2.6797 6.1251
41 1 1.0034 -2.7996 5.4027
42 1 0.0813 -2.0401 8.3024
43 1 0.2747 -3.7500 7.6386
44 1 2.7310 -3.2988 7.1916
45 1 2.5383 -1.5888 7.8548
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000942823211.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:33:38
Heat of formation + Delta-G solvation = 30.252270 kcal
Electronic energy + Delta-G solvation = -26893.180596 eV
Core-core repulsion = 23230.791569 eV
Total energy + Delta-G solvation = -3662.389026 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.141 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.73649 -40.27672 -38.92493 -38.19964 -36.21043 -34.20327 -32.96765 -31.89362
-31.28440 -27.74663 -27.44524 -26.33280 -24.35076 -23.44031 -23.14989 -22.85072
-22.61873 -21.30291 -20.39786 -19.16077 -18.75040 -17.90477 -17.10219 -16.94178
-16.64292 -16.39425 -15.73935 -15.63157 -15.48259 -15.15124 -15.10108 -14.91142
-14.65270 -14.47320 -14.26255 -13.63352 -13.15223 -13.09529 -13.04020 -13.00217
-12.76919 -12.63714 -12.53836 -12.31448 -12.12276 -12.07613 -12.03859 -11.76176
-11.64748 -11.59790 -11.28736 -10.93767 -10.72669 -10.59225 -10.25800 -10.13325
-9.76905 -8.73833 -7.88950 -5.34991 -0.52815 0.20962 0.61197 0.95177
1.45875 1.47610 1.58600 2.18213 2.28049 2.50219 2.88323 3.12656
3.26784 3.43537 3.60280 3.71160 3.76126 3.99077 3.99932 4.07503
4.12785 4.17227 4.33715 4.53960 4.56346 4.65708 4.67556 4.69140
4.81420 4.82595 4.88747 4.93485 4.97065 5.05549 5.10247 5.13059
5.17780 5.25747 5.34611 5.47469 5.51604 5.61678 5.66780 6.29318
6.36310 6.63270 7.11116 7.16594 7.81612 8.34945 9.18351
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.019119 B = 0.002758 C = 0.002611
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1464.153623 B =10149.534946 C =10720.212994
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.100 4.100
3 H 0.076 0.924
4 C 0.152 3.848
5 N -0.609 5.609
6 C -0.262 4.262
7 H 0.073 0.927
8 C -0.054 4.054
9 N -0.937 5.937
10 Si 0.969 3.031
11 H -0.263 1.263
12 H -0.292 1.292
13 H -0.292 1.292
14 C 0.185 3.815
15 C -0.131 4.131
16 C 0.170 3.830
17 H 0.060 0.940
18 N -0.694 5.694
19 C 0.585 3.415
20 O -0.566 6.566
21 C -0.028 4.028
22 N -0.463 5.463
23 C -0.006 4.006
24 S 0.281 5.719
25 C -0.167 4.167
26 C -0.118 4.118
27 C -0.151 4.151
28 C -0.160 4.160
29 H 0.047 0.953
30 H 0.073 0.927
31 H 0.063 0.937
32 H 0.012 0.988
33 H 0.067 0.933
34 H 0.250 0.750
35 H -0.008 1.008
36 H 0.057 0.943
37 H 0.046 0.954
38 H 0.057 0.943
39 H 0.413 0.587
40 H 0.244 0.756
41 H 0.116 0.884
42 H 0.114 0.886
43 H 0.117 0.883
44 H 0.104 0.896
45 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.839 7.855 23.094 29.084
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.121 4.121
3 H 0.094 0.906
4 C 0.026 3.974
5 N -0.332 5.332
6 C -0.392 4.392
7 H 0.091 0.909
8 C -0.249 4.249
9 N -0.583 5.583
10 Si 0.797 3.203
11 H -0.187 1.187
12 H -0.219 1.219
13 H -0.219 1.219
14 C 0.059 3.941
15 C -0.171 4.171
16 C 0.065 3.935
17 H 0.079 0.921
18 N -0.344 5.344
19 C 0.370 3.630
20 O -0.446 6.446
21 C -0.162 4.162
22 N -0.178 5.178
23 C -0.305 4.305
24 S 0.539 5.461
25 C -0.291 4.291
26 C -0.138 4.138
27 C -0.189 4.189
28 C -0.198 4.198
29 H 0.067 0.933
30 H 0.092 0.908
31 H 0.082 0.918
32 H 0.030 0.970
33 H 0.085 0.915
34 H 0.059 0.941
35 H 0.010 0.990
36 H 0.075 0.925
37 H 0.064 0.936
38 H 0.076 0.924
39 H 0.250 0.750
40 H 0.260 0.740
41 H 0.133 0.867
42 H 0.132 0.868
43 H 0.135 0.865
44 H 0.122 0.878
45 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -15.753 7.354 23.611 29.321
hybrid contribution 1.444 -0.136 -1.817 2.325
sum -14.309 7.218 21.794 27.052
Atomic orbital electron populations
1.21693 0.92849 1.01851 1.02629 1.21768 0.96808 0.99804 0.93711
0.90559 1.21057 0.83507 0.96807 0.96045 1.44351 1.01117 1.71405
1.16342 1.19589 0.98735 1.12162 1.08665 0.90931 1.25861 1.01886
0.96058 1.01077 1.70213 1.21981 1.16225 1.49911 0.85177 0.78897
0.78459 0.77728 1.18703 1.21864 1.21910 1.20450 0.97659 0.92094
0.83913 1.22324 0.95884 1.00665 0.98229 1.20730 0.92625 0.96265
0.83848 0.92146 1.45879 1.64395 1.15029 1.09091 1.17497 0.77335
0.85533 0.82646 1.90741 1.52098 1.16884 1.84836 1.20118 1.10129
0.90760 0.95176 1.66931 1.12933 1.10606 1.27289 1.29028 1.03374
1.07027 0.91092 1.82384 1.54264 0.97545 1.11932 1.25098 1.04133
1.02040 0.97860 1.20601 1.07842 0.89700 0.95667 1.23290 0.96908
1.03498 0.95174 1.23174 0.92800 1.04124 0.99730 0.93349 0.90849
0.91792 0.97006 0.91482 0.94136 0.99041 0.92473 0.93556 0.92448
0.75018 0.74034 0.86661 0.86754 0.86516 0.87807 0.87716
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.56 9.02 71.98 0.65 -2.92 16
2 C -0.10 -3.44 2.46 -10.72 -0.03 -3.46 16
3 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16
4 C 0.15 6.43 5.80 86.36 0.50 6.93 16
5 N -0.61 -31.75 3.00 -699.06 -2.09 -33.84 16
6 C -0.26 -14.65 9.59 84.03 0.81 -13.84 16
7 H 0.07 3.90 7.89 -2.91 -0.02 3.88 16
8 C -0.05 -3.07 4.91 84.86 0.42 -2.66 16
9 N -0.94 -57.44 11.19 21.65 0.24 -57.20 16
10 Si 0.97 45.74 29.59 68.60 2.03 47.77 16
11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16
12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16
13 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16
14 C 0.19 9.72 5.31 86.36 0.46 10.18 16
15 C -0.13 -5.66 5.65 30.67 0.17 -5.49 16
16 C 0.17 6.37 1.88 45.02 0.08 6.45 16
17 H 0.06 2.56 7.58 -2.39 -0.02 2.54 16
18 N -0.69 -22.37 4.36 -445.81 -1.95 -24.31 16
19 C 0.58 19.96 7.76 86.62 0.67 20.63 16
20 O -0.57 -22.77 13.82 -4.14 -0.06 -22.83 16
21 C -0.03 -0.76 6.70 40.56 0.27 -0.49 16
22 N -0.46 -10.46 10.12 -193.03 -1.95 -12.41 16
23 C -0.01 -0.08 12.17 130.71 1.59 1.51 16
24 S 0.28 3.36 21.77 -56.49 -1.23 2.13 16
25 C -0.17 -3.74 6.04 24.99 0.15 -3.59 16
26 C -0.12 -2.67 5.40 -11.54 -0.06 -2.73 16
27 C -0.15 -2.16 10.04 30.62 0.31 -1.85 16
28 C -0.16 -2.85 10.24 30.62 0.31 -2.54 16
29 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16
30 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16
31 H 0.06 1.55 7.36 -2.39 -0.02 1.53 16
32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16
33 H 0.07 2.69 7.94 -2.39 -0.02 2.67 16
34 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16
35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16
36 H 0.06 3.35 6.04 -2.39 -0.01 3.34 16
37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16
39 H 0.41 11.67 7.83 -92.71 -0.73 10.95 16
40 H 0.24 1.08 8.06 -2.91 -0.02 1.06 16
41 H 0.12 3.43 6.17 -2.39 -0.01 3.42 16
42 H 0.11 1.15 7.28 -2.39 -0.02 1.13 16
43 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16
44 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16
45 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16
Total: -1.00 -73.81 373.99 1.58 -72.23
By element:
Atomic # 1 Polarization: 22.06 SS G_CDS: 0.28 Total: 22.34 kcal
Atomic # 6 Polarization: -0.18 SS G_CDS: 6.31 Total: 6.13 kcal
Atomic # 7 Polarization: -122.02 SS G_CDS: -5.75 Total: -127.77 kcal
Atomic # 8 Polarization: -22.77 SS G_CDS: -0.06 Total: -22.83 kcal
Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal
Atomic # 16 Polarization: 3.36 SS G_CDS: -1.23 Total: 2.13 kcal
Total: -73.81 1.58 -72.23 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000942823211.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.479 kcal
(2) G-P(sol) polarization free energy of solvation -73.810 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.670 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.252 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds