Wall clock time and date at job start Tue Mar 31 2020 19:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.50273 * 2 1 4 4 C 1.53192 * 109.49914 * 239.92974 * 2 1 3 5 5 N 1.46934 * 108.77534 * 185.41297 * 4 2 1 6 6 C 1.36936 * 120.63116 * 233.58649 * 5 4 2 7 7 H 1.07995 * 119.99991 * 27.68765 * 6 5 4 8 8 C 1.38813 * 119.99769 * 207.68021 * 6 5 4 9 9 N 1.31614 * 120.00156 * 17.38115 * 8 6 5 10 10 Si 1.86798 * 119.99757 * 197.38068 * 8 6 5 11 11 H 1.48501 * 109.47305 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47097 * 120.00197 * 10 8 6 13 13 H 1.48501 * 109.47324 * 240.00404 * 10 8 6 14 14 C 1.46929 * 118.73528 * 53.61477 * 5 4 2 15 15 C 1.53199 * 108.77348 * 306.38746 * 14 5 4 16 16 C 1.53035 * 109.33724 * 54.62234 * 15 14 5 17 17 H 1.09000 * 109.43503 * 58.68927 * 16 15 14 18 18 N 1.46499 * 109.48495 * 178.64658 * 16 15 14 19 19 C 1.34779 * 119.99987 * 275.08539 * 18 16 15 20 20 O 1.21635 * 119.99733 * 0.02562 * 19 18 16 21 21 C 1.47268 * 120.00059 * 179.97438 * 19 18 16 22 22 N 1.33558 * 123.14398 * 0.02991 * 21 19 18 23 23 C 1.28644 * 115.77082 * 179.97438 * 22 21 19 24 24 S 1.70778 * 110.55531 * 0.02562 * 23 22 21 25 25 C 1.35207 * 123.14067 * 179.73140 * 21 19 18 26 26 C 1.50699 * 125.58368 * 0.02562 * 25 21 19 27 27 C 1.53004 * 117.49719 * 188.74676 * 26 25 21 28 28 C 1.53000 * 117.49830 * 120.08598 * 26 25 21 29 29 H 1.09004 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46978 * 60.00861 * 1 2 3 31 31 H 1.08994 * 109.47118 * 300.00461 * 1 2 3 32 32 H 1.09001 * 109.59088 * 305.20406 * 4 2 1 33 33 H 1.09001 * 109.58730 * 65.48964 * 4 2 1 34 34 H 0.97001 * 120.00168 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.58971 * 66.17795 * 14 5 4 36 36 H 1.08994 * 109.58199 * 186.60507 * 14 5 4 37 37 H 1.08994 * 109.49564 * 174.59247 * 15 14 5 38 38 H 1.09003 * 109.49759 * 294.65590 * 15 14 5 39 39 H 0.96998 * 120.00445 * 95.08383 * 18 16 15 40 40 H 1.07995 * 124.72146 * 180.02562 * 23 22 21 41 41 H 1.08995 * 115.55681 * 334.41025 * 26 25 21 42 42 H 1.09002 * 117.49691 * 359.97438 * 27 26 25 43 43 H 1.08998 * 117.50079 * 145.01935 * 27 26 25 44 44 H 1.08998 * 117.49852 * 214.97260 * 28 26 25 45 45 H 1.09000 * 117.49814 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5047 -0.8289 -1.1697 6 6 4.2936 -0.3789 -2.1944 7 1 3.9468 0.4210 -2.8318 8 6 5.5393 -0.9507 -2.4139 9 7 5.8281 -2.1215 -1.8866 10 14 6.8057 -0.0585 -3.4577 11 1 6.2388 1.2302 -3.9299 12 1 8.0207 0.2039 -2.6452 13 1 7.1647 -0.9000 -4.6275 14 6 4.1053 -1.4268 0.0306 15 6 3.5708 -0.6953 1.2660 16 6 2.0407 -0.7227 1.2486 17 1 1.6966 -1.7569 1.2359 18 7 1.5264 -0.0522 2.4453 19 6 1.3983 -0.7371 3.5990 20 8 1.7101 -1.9118 3.6467 21 6 0.8817 -0.0629 4.8021 22 7 0.5214 1.2231 4.8206 23 6 0.0888 1.6665 5.9480 24 16 0.1074 0.4299 7.1257 25 6 0.7225 -0.6894 5.9896 26 6 1.0389 -2.1364 6.2670 27 6 0.5991 -2.7097 7.6157 28 6 2.0811 -2.4374 7.3459 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 1.6052 -1.7214 -1.2984 33 1 1.7617 -0.1588 -2.1391 34 1 6.6985 -2.5213 -2.0402 35 1 3.8375 -2.4819 0.0863 36 1 5.1895 -1.3246 -0.0139 37 1 3.9333 -1.1902 2.1669 38 1 3.9163 0.3384 1.2546 39 1 1.2780 0.8847 2.4074 40 1 -0.2403 2.6797 6.1251 41 1 1.0034 -2.7996 5.4027 42 1 0.0813 -2.0401 8.3024 43 1 0.2747 -3.7500 7.6386 44 1 2.7310 -3.2988 7.1916 45 1 2.5383 -1.5888 7.8548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942823211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:38 Heat of formation + Delta-G solvation = 30.252270 kcal Electronic energy + Delta-G solvation = -26893.180596 eV Core-core repulsion = 23230.791569 eV Total energy + Delta-G solvation = -3662.389026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73649 -40.27672 -38.92493 -38.19964 -36.21043 -34.20327 -32.96765 -31.89362 -31.28440 -27.74663 -27.44524 -26.33280 -24.35076 -23.44031 -23.14989 -22.85072 -22.61873 -21.30291 -20.39786 -19.16077 -18.75040 -17.90477 -17.10219 -16.94178 -16.64292 -16.39425 -15.73935 -15.63157 -15.48259 -15.15124 -15.10108 -14.91142 -14.65270 -14.47320 -14.26255 -13.63352 -13.15223 -13.09529 -13.04020 -13.00217 -12.76919 -12.63714 -12.53836 -12.31448 -12.12276 -12.07613 -12.03859 -11.76176 -11.64748 -11.59790 -11.28736 -10.93767 -10.72669 -10.59225 -10.25800 -10.13325 -9.76905 -8.73833 -7.88950 -5.34991 -0.52815 0.20962 0.61197 0.95177 1.45875 1.47610 1.58600 2.18213 2.28049 2.50219 2.88323 3.12656 3.26784 3.43537 3.60280 3.71160 3.76126 3.99077 3.99932 4.07503 4.12785 4.17227 4.33715 4.53960 4.56346 4.65708 4.67556 4.69140 4.81420 4.82595 4.88747 4.93485 4.97065 5.05549 5.10247 5.13059 5.17780 5.25747 5.34611 5.47469 5.51604 5.61678 5.66780 6.29318 6.36310 6.63270 7.11116 7.16594 7.81612 8.34945 9.18351 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019119 B = 0.002758 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.153623 B =10149.534946 C =10720.212994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 H 0.076 0.924 4 C 0.152 3.848 5 N -0.609 5.609 6 C -0.262 4.262 7 H 0.073 0.927 8 C -0.054 4.054 9 N -0.937 5.937 10 Si 0.969 3.031 11 H -0.263 1.263 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.185 3.815 15 C -0.131 4.131 16 C 0.170 3.830 17 H 0.060 0.940 18 N -0.694 5.694 19 C 0.585 3.415 20 O -0.566 6.566 21 C -0.028 4.028 22 N -0.463 5.463 23 C -0.006 4.006 24 S 0.281 5.719 25 C -0.167 4.167 26 C -0.118 4.118 27 C -0.151 4.151 28 C -0.160 4.160 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.012 0.988 33 H 0.067 0.933 34 H 0.250 0.750 35 H -0.008 1.008 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.413 0.587 40 H 0.244 0.756 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.839 7.855 23.094 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.121 4.121 3 H 0.094 0.906 4 C 0.026 3.974 5 N -0.332 5.332 6 C -0.392 4.392 7 H 0.091 0.909 8 C -0.249 4.249 9 N -0.583 5.583 10 Si 0.797 3.203 11 H -0.187 1.187 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.059 3.941 15 C -0.171 4.171 16 C 0.065 3.935 17 H 0.079 0.921 18 N -0.344 5.344 19 C 0.370 3.630 20 O -0.446 6.446 21 C -0.162 4.162 22 N -0.178 5.178 23 C -0.305 4.305 24 S 0.539 5.461 25 C -0.291 4.291 26 C -0.138 4.138 27 C -0.189 4.189 28 C -0.198 4.198 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.030 0.970 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.010 0.990 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.250 0.750 40 H 0.260 0.740 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.122 0.878 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.753 7.354 23.611 29.321 hybrid contribution 1.444 -0.136 -1.817 2.325 sum -14.309 7.218 21.794 27.052 Atomic orbital electron populations 1.21693 0.92849 1.01851 1.02629 1.21768 0.96808 0.99804 0.93711 0.90559 1.21057 0.83507 0.96807 0.96045 1.44351 1.01117 1.71405 1.16342 1.19589 0.98735 1.12162 1.08665 0.90931 1.25861 1.01886 0.96058 1.01077 1.70213 1.21981 1.16225 1.49911 0.85177 0.78897 0.78459 0.77728 1.18703 1.21864 1.21910 1.20450 0.97659 0.92094 0.83913 1.22324 0.95884 1.00665 0.98229 1.20730 0.92625 0.96265 0.83848 0.92146 1.45879 1.64395 1.15029 1.09091 1.17497 0.77335 0.85533 0.82646 1.90741 1.52098 1.16884 1.84836 1.20118 1.10129 0.90760 0.95176 1.66931 1.12933 1.10606 1.27289 1.29028 1.03374 1.07027 0.91092 1.82384 1.54264 0.97545 1.11932 1.25098 1.04133 1.02040 0.97860 1.20601 1.07842 0.89700 0.95667 1.23290 0.96908 1.03498 0.95174 1.23174 0.92800 1.04124 0.99730 0.93349 0.90849 0.91792 0.97006 0.91482 0.94136 0.99041 0.92473 0.93556 0.92448 0.75018 0.74034 0.86661 0.86754 0.86516 0.87807 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.02 71.98 0.65 -2.92 16 2 C -0.10 -3.44 2.46 -10.72 -0.03 -3.46 16 3 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 4 C 0.15 6.43 5.80 86.36 0.50 6.93 16 5 N -0.61 -31.75 3.00 -699.06 -2.09 -33.84 16 6 C -0.26 -14.65 9.59 84.03 0.81 -13.84 16 7 H 0.07 3.90 7.89 -2.91 -0.02 3.88 16 8 C -0.05 -3.07 4.91 84.86 0.42 -2.66 16 9 N -0.94 -57.44 11.19 21.65 0.24 -57.20 16 10 Si 0.97 45.74 29.59 68.60 2.03 47.77 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 14 C 0.19 9.72 5.31 86.36 0.46 10.18 16 15 C -0.13 -5.66 5.65 30.67 0.17 -5.49 16 16 C 0.17 6.37 1.88 45.02 0.08 6.45 16 17 H 0.06 2.56 7.58 -2.39 -0.02 2.54 16 18 N -0.69 -22.37 4.36 -445.81 -1.95 -24.31 16 19 C 0.58 19.96 7.76 86.62 0.67 20.63 16 20 O -0.57 -22.77 13.82 -4.14 -0.06 -22.83 16 21 C -0.03 -0.76 6.70 40.56 0.27 -0.49 16 22 N -0.46 -10.46 10.12 -193.03 -1.95 -12.41 16 23 C -0.01 -0.08 12.17 130.71 1.59 1.51 16 24 S 0.28 3.36 21.77 -56.49 -1.23 2.13 16 25 C -0.17 -3.74 6.04 24.99 0.15 -3.59 16 26 C -0.12 -2.67 5.40 -11.54 -0.06 -2.73 16 27 C -0.15 -2.16 10.04 30.62 0.31 -1.85 16 28 C -0.16 -2.85 10.24 30.62 0.31 -2.54 16 29 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.06 1.55 7.36 -2.39 -0.02 1.53 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 2.69 7.94 -2.39 -0.02 2.67 16 34 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.06 3.35 6.04 -2.39 -0.01 3.34 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.41 11.67 7.83 -92.71 -0.73 10.95 16 40 H 0.24 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.12 3.43 6.17 -2.39 -0.01 3.42 16 42 H 0.11 1.15 7.28 -2.39 -0.02 1.13 16 43 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -73.81 373.99 1.58 -72.23 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.28 Total: 22.34 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.31 Total: 6.13 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -5.75 Total: -127.77 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.06 Total: -22.83 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.23 Total: 2.13 kcal Total: -73.81 1.58 -72.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942823211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.479 kcal (2) G-P(sol) polarization free energy of solvation -73.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds