Wall clock time and date at job start Tue Mar 31 2020 19:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.49928 * 2 1 4 4 C 1.53197 * 109.52105 * 120.08360 * 2 1 3 5 5 N 1.46925 * 108.77175 * 174.60459 * 4 2 1 6 6 C 1.36935 * 120.62922 * 126.37051 * 5 4 2 7 7 H 1.08007 * 119.99710 * 207.67566 * 6 5 4 8 8 C 1.38812 * 120.00500 * 27.67432 * 6 5 4 9 9 N 1.31620 * 119.99709 * 17.37779 * 8 6 5 10 10 Si 1.86797 * 120.00364 * 197.37202 * 8 6 5 11 11 H 1.48496 * 109.47080 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47054 * 120.00112 * 10 8 6 13 13 H 1.48501 * 109.47228 * 240.00313 * 10 8 6 14 14 C 1.46927 * 118.73900 * 306.38293 * 5 4 2 15 15 C 1.53196 * 108.77057 * 53.61604 * 14 5 4 16 16 C 1.53036 * 109.30965 * 305.36121 * 15 14 5 17 17 H 1.09010 * 109.44664 * 181.38183 * 16 15 14 18 18 N 1.46503 * 109.46456 * 301.34505 * 16 15 14 19 19 C 1.34778 * 119.99886 * 275.07522 * 18 16 15 20 20 O 1.21680 * 120.00301 * 359.97438 * 19 18 16 21 21 C 1.46685 * 119.99258 * 180.02562 * 19 18 16 22 22 S 1.76211 * 126.13660 * 0.02562 * 21 19 18 23 23 C 1.70955 * 90.31386 * 179.97438 * 22 21 19 24 24 N 1.29422 * 110.39352 * 359.77203 * 23 22 21 25 25 C 1.30944 * 117.36372 * 0.42688 * 24 23 22 26 26 C 1.50706 * 122.90614 * 179.82325 * 25 24 23 27 27 C 1.52993 * 117.49549 * 59.71058 * 26 25 24 28 28 C 1.52999 * 60.00185 * 252.51275 * 27 26 25 29 29 H 1.08999 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46802 * 300.06611 * 1 2 3 31 31 H 1.09005 * 109.46616 * 60.06360 * 1 2 3 32 32 H 1.09002 * 109.58094 * 294.38921 * 4 2 1 33 33 H 1.08994 * 109.58605 * 54.81343 * 4 2 1 34 34 H 0.96999 * 120.00001 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.58439 * 173.40329 * 14 5 4 36 36 H 1.09004 * 109.58734 * 293.82687 * 14 5 4 37 37 H 1.09001 * 109.48902 * 185.41325 * 15 14 5 38 38 H 1.08995 * 109.49825 * 65.31756 * 15 14 5 39 39 H 0.96997 * 119.99642 * 95.07283 * 18 16 15 40 40 H 1.07998 * 124.79935 * 180.02562 * 23 22 21 41 41 H 1.08997 * 115.55970 * 205.40057 * 26 25 24 42 42 H 1.09003 * 117.50096 * 145.02346 * 27 26 25 43 43 H 1.08993 * 117.50210 * 359.97438 * 27 26 25 44 44 H 1.09002 * 117.50376 * 107.48675 * 28 27 26 45 45 H 1.09003 * 117.49796 * 252.51474 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0419 -0.7238 1.2494 5 7 3.5053 -0.8284 1.1690 6 6 4.2943 -0.3775 2.1934 7 1 5.2994 -0.0376 1.9915 8 6 3.8024 -0.3572 3.4913 9 7 2.7395 -1.0681 3.8033 10 14 4.6489 0.6787 4.7949 11 1 5.8121 1.3784 4.1929 12 1 3.6918 1.6803 5.3297 13 1 5.1154 -0.1987 5.8985 14 6 4.1059 -1.4256 -0.0315 15 6 3.5708 -0.6940 -1.2665 16 6 2.0409 -0.7228 -1.2485 17 1 1.6579 -0.2241 -2.1390 18 7 1.5789 -2.1130 -1.2310 19 6 1.4509 -2.7951 -2.3863 20 8 1.7185 -2.2562 -3.4440 21 6 0.9879 -4.1868 -2.3687 22 16 0.5560 -5.1203 -0.9379 23 6 0.1907 -6.4721 -1.9185 24 7 0.3856 -6.1899 -3.1665 25 6 0.8147 -4.9860 -3.4513 26 6 1.0867 -4.5258 -4.8604 27 6 -0.0802 -4.5516 -5.8495 28 6 1.0460 -5.5804 -5.9681 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 1.7643 -0.1581 2.1388 33 1 1.6063 -1.7217 1.2978 34 1 2.3959 -1.0542 4.7103 35 1 5.1902 -1.3231 0.0128 36 1 3.8386 -2.4809 -0.0875 37 1 3.9334 -1.1885 -2.1677 38 1 3.9155 0.3400 -1.2546 39 1 1.3653 -2.5424 -0.3879 40 1 -0.1576 -7.4253 -1.5492 41 1 1.8130 -3.7192 -4.9598 42 1 -0.1217 -3.7620 -6.5998 43 1 -1.0445 -4.9018 -5.4813 44 1 0.8227 -6.6070 -5.6777 45 1 1.7456 -5.4675 -6.7964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943480287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:05 Heat of formation + Delta-G solvation = 54.799616 kcal Electronic energy + Delta-G solvation = -27374.021025 eV Core-core repulsion = 23712.696451 eV Total energy + Delta-G solvation = -3661.324573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.58344 -39.54459 -37.54464 -36.53494 -34.27161 -32.37942 -31.88778 -30.77178 -29.46257 -26.43596 -25.88104 -25.16824 -23.18156 -22.42491 -22.33498 -21.50222 -20.97456 -19.43270 -18.73665 -18.04404 -17.08599 -16.61317 -15.99937 -15.35367 -15.26353 -14.89182 -14.55418 -14.39191 -14.27340 -13.94264 -13.65799 -13.60232 -13.27420 -13.04914 -12.67677 -12.39062 -12.07683 -11.65798 -11.57715 -11.49906 -11.26619 -11.06001 -10.98623 -10.85195 -10.75807 -10.45781 -10.39495 -10.19026 -10.08649 -10.00170 -9.82922 -9.64116 -9.59967 -9.47218 -8.87599 -8.67501 -8.51292 -6.73884 -5.85642 -3.27220 0.15682 1.09900 1.47779 2.32289 3.21925 3.32921 3.34856 3.41938 3.43985 3.86634 4.03060 4.44715 4.56749 4.79847 4.95683 4.98445 5.10717 5.24469 5.26657 5.38476 5.40764 5.51927 5.58470 5.62446 5.73555 5.79644 5.95684 6.03364 6.08030 6.10118 6.13782 6.24414 6.29041 6.41538 6.49357 6.49978 6.60210 6.73958 6.87102 6.94344 7.22478 7.44225 7.52709 7.71004 7.75558 8.32829 8.38095 9.14555 9.77691 10.33984 11.22861 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018999 B = 0.003276 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.398262 B = 8545.013323 C = 9080.625175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 H 0.081 0.919 4 C 0.178 3.822 5 N -0.592 5.592 6 C -0.251 4.251 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.903 5.903 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.147 3.853 15 C -0.146 4.146 16 C 0.161 3.839 17 H 0.077 0.923 18 N -0.703 5.703 19 C 0.595 3.405 20 O -0.530 6.530 21 C -0.283 4.283 22 S 0.180 5.820 23 C 0.026 3.974 24 N -0.474 5.474 25 C 0.167 3.833 26 C -0.093 4.093 27 C -0.158 4.158 28 C -0.165 4.165 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.013 0.987 34 H 0.253 0.747 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.401 0.599 40 H 0.205 0.795 41 H 0.144 0.856 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 -7.886 -12.599 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 H 0.099 0.901 4 C 0.052 3.948 5 N -0.314 5.314 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.021 3.979 15 C -0.186 4.186 16 C 0.057 3.943 17 H 0.095 0.905 18 N -0.355 5.355 19 C 0.379 3.621 20 O -0.410 6.410 21 C -0.407 4.407 22 S 0.435 5.565 23 C -0.269 4.269 24 N -0.187 5.187 25 C 0.029 3.971 26 C -0.113 4.113 27 C -0.196 4.196 28 C -0.202 4.202 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.238 0.762 40 H 0.221 0.779 41 H 0.161 0.839 42 H 0.118 0.882 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.500 -7.770 -12.380 16.428 hybrid contribution 0.385 0.331 0.555 0.752 sum -7.116 -7.440 -11.824 15.678 Atomic orbital electron populations 1.21728 0.95819 1.01172 1.01016 1.22154 0.94797 1.00884 0.97119 0.90109 1.20793 0.83217 0.96463 0.94332 1.44068 1.01591 1.69494 1.16247 1.19233 0.97762 1.35276 0.85786 0.91597 1.25012 0.98543 0.99073 0.96941 1.70022 1.25717 1.40259 1.18725 0.86240 0.78936 0.80025 0.81677 1.20267 1.21562 1.21757 1.20869 0.96617 0.94024 0.86430 1.22392 0.94873 1.01872 0.99465 1.20965 0.94479 0.80010 0.98846 0.90538 1.46101 1.66654 1.14642 1.08079 1.16630 0.77666 0.83163 0.84603 1.90738 1.51437 1.68523 1.30283 1.25586 1.17393 1.01356 0.96397 1.84343 1.57354 1.04953 1.09815 1.28653 1.02562 1.04223 0.91453 1.65966 1.15763 1.18532 1.18483 1.19698 0.95133 0.86881 0.95362 1.20882 1.03789 1.02621 0.84050 1.22900 0.93619 1.02004 1.01064 1.22980 1.01580 0.96107 0.99564 0.93341 0.92464 0.93576 0.88955 0.96862 0.93682 0.92801 0.96672 0.92443 0.91211 0.76246 0.77851 0.83876 0.88237 0.88972 0.87894 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.06 37.16 0.34 -1.77 16 2 C -0.13 -2.27 2.67 -90.50 -0.24 -2.51 16 3 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.18 3.88 4.30 -3.71 -0.02 3.86 16 5 N -0.59 -14.00 2.99 -172.31 -0.52 -14.52 16 6 C -0.25 -6.62 9.58 -15.06 -0.14 -6.77 16 7 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 9 N -0.90 -24.87 11.19 55.49 0.62 -24.25 16 10 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.15 3.02 6.26 -3.71 -0.02 3.00 16 15 C -0.15 -2.60 5.77 -26.61 -0.15 -2.75 16 16 C 0.16 2.72 2.21 -67.89 -0.15 2.57 16 17 H 0.08 1.29 7.58 -51.92 -0.39 0.90 16 18 N -0.70 -11.38 3.59 -55.07 -0.20 -11.58 16 19 C 0.59 9.69 7.74 -12.85 -0.10 9.59 16 20 O -0.53 -9.58 13.98 5.21 0.07 -9.50 16 21 C -0.28 -4.09 6.48 -37.09 -0.24 -4.33 16 22 S 0.18 2.06 22.35 -107.50 -2.40 -0.34 16 23 C 0.03 0.27 12.22 51.75 0.63 0.90 16 24 N -0.47 -5.99 9.81 -11.53 -0.11 -6.11 16 25 C 0.17 2.34 6.41 -83.89 -0.54 1.80 16 26 C -0.09 -1.22 5.44 -91.77 -0.50 -1.72 16 27 C -0.16 -1.74 10.23 -26.74 -0.27 -2.01 16 28 C -0.16 -1.77 10.08 -26.73 -0.27 -2.04 16 29 H 0.05 0.71 7.54 -51.93 -0.39 0.32 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.30 6.04 -51.93 -0.31 1.99 16 33 H 0.01 0.30 6.64 -51.93 -0.34 -0.04 16 34 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 36 H 0.02 0.32 7.74 -51.93 -0.40 -0.08 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.40 6.53 5.91 -40.82 -0.24 6.28 16 40 H 0.20 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.14 2.09 6.17 -51.93 -0.32 1.77 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.10 1.13 7.74 -51.93 -0.40 0.73 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -29.60 370.88 -10.32 -39.92 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.57 Total: 6.96 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.77 Total: -2.20 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.21 Total: -56.46 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.40 Total: -0.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.60 -10.32 -39.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943480287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.720 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds