Wall clock time and date at job start Tue Mar 31 2020 19:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.52588 * 2 1 4 4 C 1.53202 * 109.49576 * 239.92091 * 2 1 3 5 5 N 1.46921 * 108.89095 * 185.48545 * 4 2 1 6 6 C 1.36936 * 120.62896 * 233.55861 * 5 4 2 7 7 H 1.08007 * 119.99922 * 151.82366 * 6 5 4 8 8 C 1.38810 * 119.99947 * 331.81879 * 6 5 4 9 9 N 1.31613 * 120.00273 * 343.08601 * 8 6 5 10 10 Si 1.86803 * 119.99828 * 163.07892 * 8 6 5 11 11 H 1.48507 * 109.47194 * 60.00090 * 10 8 6 12 12 H 1.48502 * 109.47096 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47239 * 300.00059 * 10 8 6 14 14 C 1.46925 * 118.73959 * 53.53708 * 5 4 2 15 15 C 1.53193 * 108.77735 * 306.38701 * 14 5 4 16 16 C 1.53044 * 109.30769 * 54.63524 * 15 14 5 17 17 H 1.09008 * 109.45699 * 178.62540 * 16 15 14 18 18 N 1.46505 * 109.45868 * 58.65745 * 16 15 14 19 19 C 1.34776 * 119.99925 * 84.99612 * 18 16 15 20 20 O 1.21687 * 120.00303 * 0.02562 * 19 18 16 21 21 C 1.46686 * 119.99935 * 179.97438 * 19 18 16 22 22 S 1.76219 * 126.12830 * 0.03062 * 21 19 18 23 23 C 1.70953 * 90.31273 * 180.02562 * 22 21 19 24 24 N 1.29426 * 110.39078 * 359.97438 * 23 22 21 25 25 C 1.30941 * 117.36457 * 359.71016 * 24 23 22 26 26 C 1.50704 * 122.90853 * 180.34350 * 25 24 23 27 27 C 1.53003 * 117.49444 * 8.81563 * 26 25 24 28 28 C 1.52989 * 60.00203 * 252.51195 * 27 26 25 29 29 H 1.09005 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47023 * 300.08169 * 1 2 3 31 31 H 1.09001 * 109.47158 * 60.07976 * 1 2 3 32 32 H 1.08997 * 109.58441 * 65.62749 * 4 2 1 33 33 H 1.09001 * 109.58226 * 305.34340 * 4 2 1 34 34 H 0.96997 * 120.00271 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.59125 * 66.18147 * 14 5 4 36 36 H 1.09006 * 109.58704 * 186.46412 * 14 5 4 37 37 H 1.08997 * 109.49970 * 174.58750 * 15 14 5 38 38 H 1.08995 * 109.49972 * 294.65699 * 15 14 5 39 39 H 0.96994 * 119.99601 * 264.99727 * 18 16 15 40 40 H 1.08003 * 124.80326 * 179.97438 * 23 22 21 41 41 H 1.08997 * 115.55192 * 154.52278 * 26 25 24 42 42 H 1.08996 * 117.49939 * 0.02562 * 27 26 25 43 43 H 1.09003 * 117.49801 * 145.01706 * 27 26 25 44 44 H 1.09004 * 117.49892 * 252.51130 * 28 27 26 45 45 H 1.08998 * 117.50482 * 107.49260 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2497 5 7 3.5044 -0.8321 -1.1715 6 6 4.2930 -0.3837 -2.1973 7 1 5.2965 -0.0387 -1.9960 8 6 3.8026 -0.3727 -3.4959 9 7 2.7377 -1.0823 -3.8033 10 14 4.6542 0.6496 -4.8071 11 1 6.0586 0.1910 -4.9578 12 1 3.9400 0.4915 -6.0995 13 1 4.6407 2.0795 -4.4064 14 6 4.1054 -1.4302 0.0284 15 6 3.5742 -0.6966 1.2639 16 6 2.0441 -0.7215 1.2482 17 1 1.6636 -0.2214 2.1390 18 7 1.5787 -2.1106 1.2322 19 6 1.4494 -2.7913 2.3882 20 8 1.7188 -2.2521 3.4453 21 6 0.9830 -4.1820 2.3722 22 16 0.5496 -5.1161 0.9421 23 6 0.1804 -6.4658 1.9242 24 7 0.3805 -6.1842 3.1715 25 6 0.8138 -4.9815 3.4550 26 6 1.0954 -4.5233 4.8628 27 6 1.0572 -5.5786 5.9700 28 6 -0.0660 -4.5458 5.8586 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5151 0.8892 31 1 -0.3633 0.5126 -0.8907 32 1 1.7637 -0.1579 -2.1389 33 1 1.6032 -1.7207 -1.2994 34 1 2.3953 -1.0749 -4.7108 35 1 3.8357 -2.4847 0.0854 36 1 5.1901 -1.3325 -0.0188 37 1 3.9370 -1.1914 2.1648 38 1 3.9218 0.3364 1.2511 39 1 1.3637 -2.5403 0.3896 40 1 -0.1701 -7.4187 1.5559 41 1 1.8250 -3.7192 4.9584 42 1 0.8288 -6.6042 5.6801 43 1 1.7619 -5.4689 6.7943 44 1 -0.1003 -3.7565 6.6097 45 1 -1.0337 -4.8917 5.4955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943480292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:11 Heat of formation + Delta-G solvation = 54.701220 kcal Electronic energy + Delta-G solvation = -27373.781956 eV Core-core repulsion = 23712.453116 eV Total energy + Delta-G solvation = -3661.328840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.58168 -39.54074 -37.53788 -36.53343 -34.26760 -32.37609 -31.88626 -30.77113 -29.46081 -26.43515 -25.87726 -25.16525 -23.18008 -22.42385 -22.33413 -21.49948 -20.97636 -19.43053 -18.73252 -18.04285 -17.08378 -16.60888 -15.99748 -15.35261 -15.26082 -14.88676 -14.55343 -14.38836 -14.27004 -13.95118 -13.65575 -13.59653 -13.27369 -13.04607 -12.67249 -12.39043 -12.07204 -11.65643 -11.57551 -11.50311 -11.26083 -11.05819 -10.97529 -10.84936 -10.72908 -10.46473 -10.42988 -10.18944 -10.08532 -10.01133 -9.82806 -9.64016 -9.59825 -9.47454 -8.87508 -8.67135 -8.50649 -6.72888 -5.85271 -3.27540 0.15830 1.10033 1.47902 2.32446 3.22047 3.34247 3.35640 3.40810 3.42443 3.86682 4.03230 4.44883 4.56893 4.79946 4.95793 4.98562 5.10818 5.24465 5.26810 5.38810 5.40953 5.52143 5.58624 5.62604 5.73690 5.79744 5.95797 6.03419 6.08148 6.10203 6.13966 6.24496 6.29267 6.41676 6.49490 6.50221 6.60375 6.74342 6.87281 6.94577 7.22596 7.44359 7.52929 7.71109 7.75243 8.33005 8.38813 9.14962 9.77908 10.34533 11.23230 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.003278 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.534816 B = 8540.856630 C = 9076.411788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 H 0.080 0.920 4 C 0.178 3.822 5 N -0.591 5.591 6 C -0.253 4.253 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.903 5.903 10 Si 0.902 3.098 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.147 3.853 15 C -0.146 4.146 16 C 0.161 3.839 17 H 0.077 0.923 18 N -0.703 5.703 19 C 0.595 3.405 20 O -0.531 6.531 21 C -0.283 4.283 22 S 0.180 5.820 23 C 0.026 3.974 24 N -0.474 5.474 25 C 0.167 3.833 26 C -0.093 4.093 27 C -0.165 4.165 28 C -0.158 4.158 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.013 0.987 34 H 0.254 0.746 35 H 0.015 0.985 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.401 0.599 40 H 0.205 0.795 41 H 0.144 0.856 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 -7.867 12.549 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 H 0.099 0.901 4 C 0.052 3.948 5 N -0.313 5.313 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.194 4.194 9 N -0.547 5.547 10 Si 0.732 3.268 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.210 1.210 14 C 0.021 3.979 15 C -0.186 4.186 16 C 0.057 3.943 17 H 0.095 0.905 18 N -0.355 5.355 19 C 0.379 3.621 20 O -0.410 6.410 21 C -0.407 4.407 22 S 0.435 5.565 23 C -0.269 4.269 24 N -0.187 5.187 25 C 0.029 3.971 26 C -0.113 4.113 27 C -0.202 4.202 28 C -0.196 4.196 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.031 0.969 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.238 0.762 40 H 0.221 0.779 41 H 0.161 0.839 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.519 -7.762 12.317 16.386 hybrid contribution 0.408 0.335 -0.547 0.760 sum -7.111 -7.426 11.770 15.629 Atomic orbital electron populations 1.21721 0.95793 1.01172 1.01021 1.22157 0.94796 1.00889 0.97128 0.90137 1.20781 0.83252 0.96464 0.94283 1.44035 1.01591 1.69495 1.16220 1.19146 0.97937 1.35501 0.85700 0.91711 1.25020 0.98500 0.98952 0.96969 1.69994 1.25557 1.40246 1.18941 0.86374 0.78972 0.80509 0.80931 1.20900 1.21643 1.21022 1.20863 0.96625 0.94008 0.86433 1.22386 0.94856 1.01874 0.99465 1.20976 0.94437 0.80029 0.98843 0.90539 1.46105 1.66548 1.14753 1.08070 1.16635 0.77678 0.83159 0.84605 1.90740 1.51453 1.68453 1.30344 1.25586 1.17380 1.01358 0.96398 1.84346 1.57283 1.05042 1.09801 1.28655 1.02555 1.04238 0.91448 1.65966 1.15705 1.18544 1.18531 1.19693 0.95140 0.86878 0.95365 1.20880 1.03786 1.02638 0.84030 1.22977 1.01578 0.96073 0.99596 1.22899 0.93698 1.01977 1.01006 0.93338 0.93566 0.92465 0.89033 0.96861 0.93562 0.96696 0.92808 0.92440 0.91216 0.76241 0.77850 0.83890 0.87895 0.88540 0.88242 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.06 37.16 0.34 -1.77 16 2 C -0.13 -2.28 2.67 -90.48 -0.24 -2.52 16 3 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.18 3.89 4.28 -3.71 -0.02 3.87 16 5 N -0.59 -14.01 2.99 -172.32 -0.52 -14.53 16 6 C -0.25 -6.69 9.58 -15.06 -0.14 -6.84 16 7 H 0.07 1.70 7.89 -52.48 -0.41 1.28 16 8 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 9 N -0.90 -24.89 11.20 55.49 0.62 -24.27 16 10 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.15 3.03 6.26 -3.71 -0.02 3.01 16 15 C -0.15 -2.60 5.78 -26.61 -0.15 -2.75 16 16 C 0.16 2.73 2.22 -67.87 -0.15 2.58 16 17 H 0.08 1.29 7.57 -51.92 -0.39 0.90 16 18 N -0.70 -11.39 3.59 -55.05 -0.20 -11.59 16 19 C 0.59 9.70 7.75 -12.85 -0.10 9.60 16 20 O -0.53 -9.59 13.99 5.20 0.07 -9.51 16 21 C -0.28 -4.09 6.48 -37.10 -0.24 -4.33 16 22 S 0.18 2.07 22.35 -107.50 -2.40 -0.34 16 23 C 0.03 0.27 12.22 51.75 0.63 0.90 16 24 N -0.47 -6.00 9.81 -11.53 -0.11 -6.11 16 25 C 0.17 2.34 6.41 -83.89 -0.54 1.80 16 26 C -0.09 -1.22 5.43 -91.77 -0.50 -1.72 16 27 C -0.16 -1.77 10.08 -26.74 -0.27 -2.04 16 28 C -0.16 -1.74 10.23 -26.74 -0.27 -2.01 16 29 H 0.05 0.71 7.53 -51.93 -0.39 0.32 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 33 H 0.01 0.30 6.65 -51.93 -0.35 -0.04 16 34 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.02 0.32 7.74 -51.93 -0.40 -0.08 16 36 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.40 6.53 5.91 -40.82 -0.24 6.29 16 40 H 0.20 1.24 8.06 -52.48 -0.42 0.81 16 41 H 0.14 2.09 6.18 -51.93 -0.32 1.77 16 42 H 0.10 1.13 7.74 -51.93 -0.40 0.73 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -29.58 370.91 -10.32 -39.89 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.58 Total: 7.02 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.77 Total: -2.21 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.21 Total: -56.49 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.40 Total: -0.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.58 -10.32 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943480292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.595 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds