Wall clock time and date at job start Tue Mar 31 2020 19:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.52508 * 2 1 4 4 C 1.53193 * 109.49726 * 120.08345 * 2 1 3 5 5 N 1.46932 * 108.89365 * 174.65895 * 4 2 1 6 6 C 1.36929 * 120.62923 * 126.33970 * 5 4 2 7 7 H 1.07994 * 120.00472 * 332.28422 * 6 5 4 8 8 C 1.38823 * 119.99710 * 152.28799 * 6 5 4 9 9 N 1.31617 * 119.99601 * 342.59309 * 8 6 5 10 10 Si 1.86793 * 119.99892 * 162.59877 * 8 6 5 11 11 H 1.48502 * 109.47323 * 94.34576 * 10 8 6 12 12 H 1.48497 * 109.47157 * 214.34797 * 10 8 6 13 13 H 1.48496 * 109.47300 * 334.34614 * 10 8 6 14 14 C 1.46927 * 118.73576 * 306.31982 * 5 4 2 15 15 C 1.53193 * 108.77748 * 53.60447 * 14 5 4 16 16 C 1.53038 * 109.31619 * 305.37029 * 15 14 5 17 17 H 1.08998 * 109.46358 * 181.37469 * 16 15 14 18 18 N 1.46511 * 109.45636 * 301.34239 * 16 15 14 19 19 C 1.34779 * 119.99754 * 275.00017 * 18 16 15 20 20 O 1.21680 * 120.00013 * 0.02562 * 19 18 16 21 21 C 1.46683 * 119.99586 * 180.02562 * 19 18 16 22 22 C 1.35656 * 126.13213 * 359.69069 * 21 19 18 23 23 N 1.30943 * 114.19051 * 179.78938 * 22 21 19 24 24 C 1.29436 * 117.36184 * 0.51881 * 23 22 21 25 25 C 1.50699 * 124.80116 * 179.69167 * 24 23 22 26 26 C 1.52998 * 117.50401 * 8.64750 * 25 24 23 27 27 C 1.52998 * 60.00204 * 252.51511 * 26 25 24 28 28 S 1.70944 * 110.39044 * 359.71339 * 24 23 22 29 29 H 1.08999 * 109.46675 * 299.91828 * 1 2 3 30 30 H 1.09000 * 109.46995 * 59.91680 * 1 2 3 31 31 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.58815 * 54.79767 * 4 2 1 33 33 H 1.09000 * 109.58606 * 294.51122 * 4 2 1 34 34 H 0.97000 * 119.99465 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.58712 * 173.40018 * 14 5 4 36 36 H 1.09003 * 109.58223 * 293.67509 * 14 5 4 37 37 H 1.09002 * 109.49143 * 65.32180 * 15 14 5 38 38 H 1.08994 * 109.49681 * 185.37844 * 15 14 5 39 39 H 0.97001 * 120.00112 * 94.99788 * 18 16 15 40 40 H 1.08001 * 122.90919 * 359.96247 * 22 21 19 41 41 H 1.08996 * 115.54947 * 154.36128 * 25 24 23 42 42 H 1.09007 * 117.49561 * 0.02562 * 26 25 24 43 43 H 1.08999 * 117.50331 * 145.02242 * 26 25 24 44 44 H 1.09001 * 117.49400 * 252.51227 * 27 26 25 45 45 H 1.08991 * 117.50517 * 107.49197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5049 -0.8291 1.1730 6 6 4.2913 -0.3782 2.1993 7 1 3.9431 0.4225 2.8349 8 6 5.5364 -0.9502 2.4226 9 7 5.8258 -2.1219 1.8976 10 14 6.8006 -0.0570 3.4681 11 1 6.7083 -0.5338 4.8715 12 1 8.1615 -0.3308 2.9408 13 1 6.5370 1.4037 3.4233 14 6 4.1084 -1.4278 -0.0254 15 6 3.5766 -0.6974 -1.2626 16 6 2.0465 -0.7255 -1.2484 17 1 1.6658 -0.2277 -2.1402 18 7 1.5842 -2.1156 -1.2305 19 6 1.4574 -2.7986 -2.3855 20 8 1.7275 -2.2607 -3.4431 21 6 0.9940 -4.1901 -2.3676 22 6 0.6659 -4.9098 -1.2655 23 7 0.2756 -6.1335 -1.5203 24 6 0.2589 -6.5067 -2.7596 25 6 -0.1529 -7.8742 -3.2405 26 6 -0.7729 -8.8265 -2.2159 27 6 0.6473 -9.0737 -2.7287 28 16 0.7708 -5.2290 -3.7733 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6053 -1.7216 1.2980 33 1 1.7617 -0.1593 2.1390 34 1 6.6957 -2.5218 2.0540 35 1 5.1925 -1.3256 0.0215 36 1 3.8429 -2.4836 -0.0795 37 1 3.9216 0.3365 -1.2508 38 1 3.9418 -1.1925 -2.1622 39 1 1.3693 -2.5445 -0.3874 40 1 0.7192 -4.5075 -0.2646 41 1 -0.5294 -7.9195 -4.2624 42 1 -0.8832 -8.4636 -1.1940 43 1 -1.5576 -9.4983 -2.5636 44 1 0.7967 -9.9082 -3.4138 45 1 1.4715 -8.8738 -2.0442 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944242882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:17 Heat of formation + Delta-G solvation = 52.862051 kcal Electronic energy + Delta-G solvation = -26841.624023 eV Core-core repulsion = 23180.215430 eV Total energy + Delta-G solvation = -3661.408592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.36550 -39.54250 -37.66397 -37.03921 -34.29786 -32.68442 -31.31014 -30.75316 -29.52354 -26.75441 -25.86562 -25.17543 -23.17077 -22.66563 -22.31394 -21.44773 -21.08188 -19.39017 -18.82478 -18.15115 -17.19408 -16.72359 -16.01220 -15.36510 -15.07919 -14.86614 -14.77589 -14.44725 -14.16860 -13.98054 -13.75861 -13.67786 -13.33120 -12.93656 -12.60589 -12.49056 -12.15690 -11.82038 -11.62961 -11.52180 -11.39656 -11.15123 -11.10879 -10.94871 -10.85544 -10.70919 -10.39585 -10.25697 -10.18755 -10.07147 -9.77648 -9.57928 -9.52577 -9.45373 -8.95155 -8.63805 -8.48531 -6.71647 -5.82365 -3.24996 0.15865 1.02703 1.58038 2.36033 3.28905 3.35241 3.43128 3.45150 3.47800 3.53655 3.82121 4.44410 4.46272 4.50493 4.65078 4.85116 5.03826 5.09591 5.20858 5.28029 5.33709 5.34474 5.46028 5.46662 5.57321 5.69940 5.83902 5.87642 5.92308 5.95779 6.04934 6.11963 6.24077 6.30074 6.41194 6.58547 6.62592 6.71606 6.85498 6.92229 7.33206 7.49396 7.63838 7.70439 7.76655 8.35040 8.40549 9.16952 9.80350 10.36129 11.25718 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.003098 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.322194 B = 9036.697429 C = 9995.881073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.255 4.255 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.900 5.900 10 Si 0.901 3.099 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.162 3.838 17 H 0.076 0.924 18 N -0.696 5.696 19 C 0.593 3.407 20 O -0.544 6.544 21 C -0.289 4.289 22 C 0.096 3.904 23 N -0.477 5.477 24 C 0.066 3.934 25 C -0.101 4.101 26 C -0.148 4.148 27 C -0.154 4.154 28 S 0.228 5.772 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.012 0.988 33 H 0.058 0.942 34 H 0.254 0.746 35 H 0.086 0.914 36 H 0.018 0.982 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.401 0.599 40 H 0.182 0.818 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 -9.290 -10.286 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 H 0.102 0.898 4 C 0.025 3.975 5 N -0.313 5.313 6 C -0.384 4.384 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.544 5.544 10 Si 0.731 3.269 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.204 1.204 14 C 0.048 3.952 15 C -0.195 4.195 16 C 0.058 3.942 17 H 0.094 0.906 18 N -0.347 5.347 19 C 0.377 3.623 20 O -0.424 6.424 21 C -0.414 4.414 22 C -0.062 4.062 23 N -0.191 5.191 24 C -0.208 4.208 25 C -0.123 4.123 26 C -0.187 4.187 27 C -0.193 4.193 28 S 0.487 5.513 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.238 0.762 40 H 0.198 0.802 41 H 0.146 0.854 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.499 -9.216 -11.732 20.120 hybrid contribution 0.756 0.582 1.901 2.127 sum -12.743 -8.635 -9.832 18.265 Atomic orbital electron populations 1.21764 0.95673 1.01349 1.01206 1.22015 0.94585 1.00803 0.96582 0.89793 1.20907 0.86156 0.96050 0.94437 1.44066 0.99102 1.71511 1.16635 1.19155 0.98359 1.12344 1.08566 0.91672 1.25032 0.99894 0.95356 0.99227 1.70036 1.21950 1.14539 1.47906 0.86305 0.81214 0.79496 0.79886 1.21475 1.21576 1.20429 1.20725 0.99365 0.92899 0.82209 1.22573 0.94006 1.02086 1.00815 1.21026 0.95213 0.79762 0.98184 0.90644 1.45889 1.66358 1.14396 1.08074 1.16649 0.77690 0.83284 0.84648 1.90809 1.51526 1.69636 1.30379 1.25863 1.16525 1.01630 0.97379 1.22162 0.96252 0.88091 0.99717 1.66011 1.17961 1.16186 1.18949 1.26482 1.01665 1.00452 0.92171 1.20538 1.07585 0.84458 0.99728 1.23021 0.96085 1.00069 0.99533 1.23074 0.95902 0.96999 1.03348 1.83926 1.56971 1.01641 1.08724 0.92625 0.93209 0.93123 0.97035 0.92393 0.93643 0.89539 0.96419 0.91572 0.92628 0.76235 0.80152 0.85377 0.87217 0.88030 0.87745 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.07 37.16 0.34 -1.51 16 2 C -0.12 -1.91 2.69 -90.34 -0.24 -2.15 16 3 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 4 C 0.15 2.90 5.49 -3.71 -0.02 2.87 16 5 N -0.59 -14.04 3.00 -172.31 -0.52 -14.55 16 6 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 7 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 8 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 9 N -0.90 -25.72 11.19 55.49 0.62 -25.10 16 10 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.17 4.05 5.05 -3.71 -0.02 4.04 16 15 C -0.15 -3.04 5.77 -26.61 -0.15 -3.19 16 16 C 0.16 2.76 2.23 -67.72 -0.15 2.60 16 17 H 0.08 1.29 7.57 -51.93 -0.39 0.90 16 18 N -0.70 -11.16 3.59 -54.91 -0.20 -11.36 16 19 C 0.59 9.95 7.75 -12.85 -0.10 9.85 16 20 O -0.54 -10.62 16.63 5.21 0.09 -10.54 16 21 C -0.29 -4.21 6.48 -37.10 -0.24 -4.45 16 22 C 0.10 1.30 10.93 -18.85 -0.21 1.09 16 23 N -0.48 -6.32 9.98 -11.50 -0.11 -6.43 16 24 C 0.07 0.76 6.96 -13.29 -0.09 0.67 16 25 C -0.10 -0.85 6.28 -91.77 -0.58 -1.43 16 26 C -0.15 -1.12 10.12 -26.73 -0.27 -1.39 16 27 C -0.15 -1.16 10.23 -26.73 -0.27 -1.43 16 28 S 0.23 2.77 23.01 -107.50 -2.47 0.30 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.63 7.55 -51.93 -0.39 0.24 16 32 H 0.01 0.22 6.64 -51.93 -0.34 -0.12 16 33 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 34 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 36 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.40 6.06 5.45 -40.82 -0.22 5.84 16 40 H 0.18 2.18 7.15 -52.49 -0.38 1.80 16 41 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.11 1.00 7.84 -51.93 -0.41 0.60 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -31.18 375.24 -10.82 -42.01 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.62 Total: 4.96 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.24 Total: -1.33 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.21 Total: -57.45 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.47 Total: 0.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.18 -10.82 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944242882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.869 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds