Wall clock time and date at job start Tue Mar 31 2020 19:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.52508 * 2 1 4 4 C 1.53193 * 109.49726 * 120.08345 * 2 1 3 5 5 N 1.46932 * 108.89365 * 174.65895 * 4 2 1 6 6 C 1.36929 * 120.62923 * 126.33970 * 5 4 2 7 7 H 1.07994 * 120.00472 * 332.28422 * 6 5 4 8 8 C 1.38823 * 119.99710 * 152.28799 * 6 5 4 9 9 N 1.31617 * 119.99601 * 342.59309 * 8 6 5 10 10 Si 1.86793 * 119.99892 * 162.59877 * 8 6 5 11 11 H 1.48502 * 109.47323 * 94.34576 * 10 8 6 12 12 H 1.48497 * 109.47157 * 214.34797 * 10 8 6 13 13 H 1.48496 * 109.47300 * 334.34614 * 10 8 6 14 14 C 1.46927 * 118.73576 * 306.31982 * 5 4 2 15 15 C 1.53193 * 108.77748 * 53.60447 * 14 5 4 16 16 C 1.53038 * 109.31619 * 305.37029 * 15 14 5 17 17 H 1.08998 * 109.46358 * 181.37469 * 16 15 14 18 18 N 1.46511 * 109.45636 * 301.34239 * 16 15 14 19 19 C 1.34779 * 119.99754 * 275.00017 * 18 16 15 20 20 O 1.21680 * 120.00013 * 0.02562 * 19 18 16 21 21 C 1.46683 * 119.99586 * 180.02562 * 19 18 16 22 22 C 1.35656 * 126.13213 * 359.69069 * 21 19 18 23 23 N 1.30943 * 114.19051 * 179.78938 * 22 21 19 24 24 C 1.29436 * 117.36184 * 0.51881 * 23 22 21 25 25 C 1.50699 * 124.80116 * 179.69167 * 24 23 22 26 26 C 1.52998 * 117.50401 * 8.64750 * 25 24 23 27 27 C 1.52998 * 60.00204 * 252.51511 * 26 25 24 28 28 S 1.70944 * 110.39044 * 359.71339 * 24 23 22 29 29 H 1.08999 * 109.46675 * 299.91828 * 1 2 3 30 30 H 1.09000 * 109.46995 * 59.91680 * 1 2 3 31 31 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.58815 * 54.79767 * 4 2 1 33 33 H 1.09000 * 109.58606 * 294.51122 * 4 2 1 34 34 H 0.97000 * 119.99465 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.58712 * 173.40018 * 14 5 4 36 36 H 1.09003 * 109.58223 * 293.67509 * 14 5 4 37 37 H 1.09002 * 109.49143 * 65.32180 * 15 14 5 38 38 H 1.08994 * 109.49681 * 185.37844 * 15 14 5 39 39 H 0.97001 * 120.00112 * 94.99788 * 18 16 15 40 40 H 1.08001 * 122.90919 * 359.96247 * 22 21 19 41 41 H 1.08996 * 115.54947 * 154.36128 * 25 24 23 42 42 H 1.09007 * 117.49561 * 0.02562 * 26 25 24 43 43 H 1.08999 * 117.50331 * 145.02242 * 26 25 24 44 44 H 1.09001 * 117.49400 * 252.51227 * 27 26 25 45 45 H 1.08991 * 117.50517 * 107.49197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5049 -0.8291 1.1730 6 6 4.2913 -0.3782 2.1993 7 1 3.9431 0.4225 2.8349 8 6 5.5364 -0.9502 2.4226 9 7 5.8258 -2.1219 1.8976 10 14 6.8006 -0.0570 3.4681 11 1 6.7083 -0.5338 4.8715 12 1 8.1615 -0.3308 2.9408 13 1 6.5370 1.4037 3.4233 14 6 4.1084 -1.4278 -0.0254 15 6 3.5766 -0.6974 -1.2626 16 6 2.0465 -0.7255 -1.2484 17 1 1.6658 -0.2277 -2.1402 18 7 1.5842 -2.1156 -1.2305 19 6 1.4574 -2.7986 -2.3855 20 8 1.7275 -2.2607 -3.4431 21 6 0.9940 -4.1901 -2.3676 22 6 0.6659 -4.9098 -1.2655 23 7 0.2756 -6.1335 -1.5203 24 6 0.2589 -6.5067 -2.7596 25 6 -0.1529 -7.8742 -3.2405 26 6 -0.7729 -8.8265 -2.2159 27 6 0.6473 -9.0737 -2.7287 28 16 0.7708 -5.2290 -3.7733 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6053 -1.7216 1.2980 33 1 1.7617 -0.1593 2.1390 34 1 6.6957 -2.5218 2.0540 35 1 5.1925 -1.3256 0.0215 36 1 3.8429 -2.4836 -0.0795 37 1 3.9216 0.3365 -1.2508 38 1 3.9418 -1.1925 -2.1622 39 1 1.3693 -2.5445 -0.3874 40 1 0.7192 -4.5075 -0.2646 41 1 -0.5294 -7.9195 -4.2624 42 1 -0.8832 -8.4636 -1.1940 43 1 -1.5576 -9.4983 -2.5636 44 1 0.7967 -9.9082 -3.4138 45 1 1.4715 -8.8738 -2.0442 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944242882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:16 Heat of formation + Delta-G solvation = 34.897695 kcal Electronic energy + Delta-G solvation = -26842.403016 eV Core-core repulsion = 23180.215430 eV Total energy + Delta-G solvation = -3662.187585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55911 -40.71740 -39.11752 -37.79198 -36.02348 -34.12604 -32.92508 -32.31799 -30.87695 -27.77380 -27.40364 -26.84714 -24.25883 -23.77884 -23.25182 -22.87742 -22.48002 -20.51509 -20.23466 -19.22265 -18.66244 -18.23510 -16.95620 -16.82449 -16.51575 -16.38865 -15.83507 -15.71627 -15.48062 -15.34560 -15.14767 -14.89093 -14.75875 -14.52484 -14.20317 -13.56328 -13.21706 -13.16651 -12.96874 -12.73570 -12.65270 -12.54128 -12.39237 -12.36959 -12.20874 -11.98060 -11.87812 -11.72516 -11.65866 -11.50859 -11.30243 -11.11505 -10.65446 -10.55686 -10.53264 -10.13199 -9.81104 -8.67672 -7.87644 -5.32022 -0.86646 0.04298 0.58829 1.30242 1.45427 1.48206 1.57131 2.05703 2.20878 2.50888 2.83274 3.01397 3.27940 3.60990 3.68143 3.72578 3.80052 3.88535 4.04833 4.05033 4.10037 4.11271 4.28388 4.38879 4.57541 4.63843 4.75320 4.79069 4.80836 4.85549 4.95290 4.96765 4.99911 5.07596 5.14858 5.15657 5.29492 5.30310 5.40953 5.46320 5.53566 5.64419 5.72545 6.37704 6.39061 6.50657 7.04593 7.14076 7.85711 8.36763 9.18221 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.003098 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.322194 B = 9036.697429 C = 9995.881073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 H 0.082 0.918 4 C 0.148 3.852 5 N -0.606 5.606 6 C -0.259 4.259 7 H 0.069 0.931 8 C -0.050 4.050 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.286 1.286 12 H -0.297 1.297 13 H -0.270 1.270 14 C 0.188 3.812 15 C -0.143 4.143 16 C 0.168 3.832 17 H 0.082 0.918 18 N -0.692 5.692 19 C 0.595 3.405 20 O -0.577 6.577 21 C -0.324 4.324 22 C 0.105 3.895 23 N -0.499 5.499 24 C 0.079 3.921 25 C -0.115 4.115 26 C -0.142 4.142 27 C -0.148 4.148 28 S 0.244 5.756 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.247 0.753 35 H 0.047 0.953 36 H -0.001 1.001 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.406 0.594 40 H 0.189 0.811 41 H 0.156 0.844 42 H 0.090 0.910 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.862 -9.810 -10.722 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 H 0.100 0.900 4 C 0.023 3.977 5 N -0.329 5.329 6 C -0.389 4.389 7 H 0.087 0.913 8 C -0.246 4.246 9 N -0.579 5.579 10 Si 0.791 3.209 11 H -0.213 1.213 12 H -0.223 1.223 13 H -0.194 1.194 14 C 0.062 3.938 15 C -0.184 4.184 16 C 0.064 3.936 17 H 0.100 0.900 18 N -0.342 5.342 19 C 0.381 3.619 20 O -0.458 6.458 21 C -0.449 4.449 22 C -0.054 4.054 23 N -0.214 5.214 24 C -0.194 4.194 25 C -0.137 4.137 26 C -0.181 4.181 27 C -0.188 4.188 28 S 0.505 5.495 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.243 0.757 40 H 0.206 0.794 41 H 0.174 0.826 42 H 0.109 0.891 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.556 -9.719 -12.163 22.009 hybrid contribution 1.334 0.638 2.030 2.511 sum -14.222 -9.081 -10.133 19.683 Atomic orbital electron populations 1.21699 0.92704 1.02203 1.02570 1.21861 0.96856 0.99810 0.94056 0.90002 1.21094 0.83441 0.96971 0.96215 1.44263 1.01057 1.71472 1.16153 1.19497 0.98861 1.12000 1.08580 0.91286 1.25746 1.01751 0.96060 1.00995 1.70187 1.21897 1.16020 1.49793 0.85332 0.78493 0.78788 0.78253 1.21262 1.22331 1.19431 1.20393 0.97163 0.92365 0.83883 1.22400 0.96276 1.01263 0.98418 1.20911 0.93013 0.80619 0.99069 0.90025 1.45804 1.66064 1.14067 1.08294 1.16885 0.76882 0.83979 0.84129 1.90781 1.53144 1.70553 1.31370 1.25691 1.19087 1.01109 0.98981 1.22342 0.94959 0.88153 0.99919 1.66107 1.19339 1.16055 1.19854 1.27142 0.99252 1.01422 0.91619 1.20899 1.08617 0.82870 1.01316 1.23088 0.96929 0.99774 0.98334 1.23149 0.95286 0.97049 1.03276 1.83810 1.56705 1.01156 1.07824 0.91152 0.91984 0.92555 0.96132 0.92105 0.94345 0.93457 0.98331 0.91557 0.93423 0.75699 0.79391 0.82600 0.89126 0.85293 0.84990 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.07 71.98 0.65 -2.45 16 2 C -0.11 -3.20 2.69 -10.61 -0.03 -3.23 16 3 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.15 5.53 5.49 86.36 0.47 6.00 16 5 N -0.61 -29.06 3.00 -699.08 -2.09 -31.15 16 6 C -0.26 -13.85 9.58 84.04 0.81 -13.04 16 7 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 8 C -0.05 -2.77 4.91 84.87 0.42 -2.35 16 9 N -0.93 -54.99 11.19 21.65 0.24 -54.74 16 10 Si 0.96 44.68 29.59 68.60 2.03 46.71 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 14 C 0.19 9.05 5.05 86.36 0.44 9.49 16 15 C -0.14 -5.73 5.77 30.67 0.18 -5.55 16 16 C 0.17 5.61 2.23 45.12 0.10 5.71 16 17 H 0.08 2.70 7.57 -2.39 -0.02 2.68 16 18 N -0.69 -21.96 3.59 -445.87 -1.60 -23.56 16 19 C 0.59 19.99 7.75 86.45 0.67 20.66 16 20 O -0.58 -22.63 16.63 -4.29 -0.07 -22.70 16 21 C -0.32 -9.39 6.48 23.88 0.15 -9.24 16 22 C 0.11 2.82 10.93 84.23 0.92 3.74 16 23 N -0.50 -12.88 9.98 -190.31 -1.90 -14.78 16 24 C 0.08 1.72 6.96 88.46 0.62 2.33 16 25 C -0.12 -1.66 6.28 -11.54 -0.07 -1.73 16 26 C -0.14 -1.81 10.12 30.59 0.31 -1.50 16 27 C -0.15 -1.89 10.23 30.59 0.31 -1.58 16 28 S 0.24 5.75 23.01 -56.49 -1.30 4.45 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.25 7.55 -2.39 -0.02 1.24 16 32 H 0.02 0.75 6.64 -2.39 -0.02 0.73 16 33 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 34 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.05 2.65 6.04 -2.39 -0.01 2.63 16 36 H 0.00 -0.07 7.74 -2.39 -0.02 -0.09 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.41 12.09 5.45 -92.71 -0.50 11.58 16 40 H 0.19 4.50 7.15 -2.91 -0.02 4.48 16 41 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 1.54 7.84 -2.38 -0.02 1.52 16 43 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -68.69 375.24 1.75 -66.94 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.50 Total: 21.57 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 5.95 Total: 7.26 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -5.35 Total: -124.24 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.07 Total: -22.70 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.30 Total: 4.45 kcal Total: -68.69 1.75 -66.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944242882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.834 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds