Wall clock time and date at job start Tue Mar 31 2020 19:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.52352 * 2 1 4 4 C 1.53189 * 109.50071 * 120.08405 * 2 1 3 5 5 N 1.46928 * 108.77421 * 174.58396 * 4 2 1 6 6 C 1.36934 * 120.62803 * 126.37199 * 5 4 2 7 7 H 1.08007 * 120.00030 * 331.83906 * 6 5 4 8 8 C 1.38810 * 120.00325 * 151.84107 * 6 5 4 9 9 N 1.31622 * 119.99621 * 343.08083 * 8 6 5 10 10 Si 1.86797 * 120.00353 * 163.07753 * 8 6 5 11 11 H 1.48498 * 109.47176 * 59.99997 * 10 8 6 12 12 H 1.48509 * 109.47271 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47027 * 300.00030 * 10 8 6 14 14 C 1.46925 * 118.73952 * 306.39055 * 5 4 2 15 15 C 1.53185 * 108.77572 * 53.61141 * 14 5 4 16 16 C 1.53040 * 109.31171 * 305.36251 * 15 14 5 17 17 H 1.09004 * 109.46237 * 181.36883 * 16 15 14 18 18 N 1.46496 * 109.46245 * 301.34236 * 16 15 14 19 19 C 1.34774 * 120.00444 * 275.00208 * 18 16 15 20 20 O 1.21633 * 119.99570 * 359.97438 * 19 18 16 21 21 C 1.47268 * 120.00211 * 179.97438 * 19 18 16 22 22 C 1.35206 * 123.14218 * 180.02562 * 21 19 18 23 23 S 1.70937 * 108.82798 * 179.97438 * 22 21 19 24 24 C 1.70771 * 91.12964 * 0.02562 * 23 22 21 25 25 C 1.50696 * 124.72094 * 180.02562 * 24 23 22 26 26 C 1.52995 * 117.50084 * 8.59369 * 25 24 23 27 27 C 1.52997 * 60.00492 * 252.51120 * 26 25 24 28 28 N 1.28648 * 110.55750 * 0.02562 * 24 23 22 29 29 H 1.09000 * 109.47387 * 180.08354 * 1 2 3 30 30 H 1.09001 * 109.46724 * 300.07957 * 1 2 3 31 31 H 1.08998 * 109.47225 * 60.07817 * 1 2 3 32 32 H 1.09003 * 109.58876 * 54.79824 * 4 2 1 33 33 H 1.09000 * 109.70557 * 294.44166 * 4 2 1 34 34 H 0.97005 * 119.99717 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.58585 * 293.81956 * 14 5 4 36 36 H 1.09001 * 109.58491 * 173.39858 * 14 5 4 37 37 H 1.08999 * 109.50002 * 185.41090 * 15 14 5 38 38 H 1.09003 * 109.52547 * 65.32670 * 15 14 5 39 39 H 0.97006 * 119.99457 * 95.00214 * 18 16 15 40 40 H 1.07995 * 125.58411 * 0.24777 * 22 21 19 41 41 H 1.09000 * 115.55060 * 154.30420 * 25 24 23 42 42 H 1.09009 * 117.49799 * 0.02562 * 26 25 24 43 43 H 1.09000 * 117.50168 * 145.02249 * 26 25 24 44 44 H 1.08995 * 117.49933 * 252.51370 * 27 26 25 45 45 H 1.08994 * 117.50089 * 107.48528 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5047 -0.8292 1.1694 6 6 4.2937 -0.3786 2.1938 7 1 3.9500 0.4268 2.8261 8 6 5.5352 -0.9569 2.4198 9 7 5.8214 -2.1282 1.8919 10 14 6.7997 -0.0729 3.4728 11 1 6.2487 0.1377 4.8356 12 1 8.0338 -0.8945 3.5588 13 1 7.1221 1.2411 2.8607 14 6 4.1053 -1.4267 -0.0310 15 6 3.5708 -0.6950 -1.2662 16 6 2.0408 -0.7231 -1.2484 17 1 1.6580 -0.2242 -2.1388 18 7 1.5783 -2.1130 -1.2310 19 6 1.4488 -2.7947 -2.3864 20 8 1.7155 -2.2557 -3.4436 21 6 0.9843 -4.1922 -2.3687 22 6 0.8322 -4.9347 -3.4883 23 16 0.2804 -6.4913 -3.0472 24 6 0.2838 -6.0611 -1.3946 25 6 -0.1140 -6.9793 -0.2678 26 6 -0.3572 -8.4509 -0.6080 27 6 -1.5390 -7.5363 -0.2799 28 7 0.6732 -4.8440 -1.2454 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6053 -1.7217 1.2979 33 1 1.7638 -0.1602 2.1402 34 1 6.6889 -2.5325 2.0501 35 1 3.8375 -2.4818 -0.0870 36 1 5.1896 -1.3246 0.0134 37 1 3.9333 -1.1896 -2.1673 38 1 3.9158 0.3390 -1.2548 39 1 1.3652 -2.5427 -0.3878 40 1 1.0314 -4.6007 -4.4958 41 1 0.3297 -6.7532 0.7018 42 1 -0.2291 -8.7551 -1.6470 43 1 -0.0734 -9.1935 0.1376 44 1 -2.0325 -7.6771 0.6817 45 1 -2.1887 -7.2386 -1.1029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000945640660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:42 Heat of formation + Delta-G solvation = 51.096606 kcal Electronic energy + Delta-G solvation = -27116.923505 eV Core-core repulsion = 23455.438357 eV Total energy + Delta-G solvation = -3661.485148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53102 -39.19480 -37.70120 -37.06311 -34.21292 -32.44766 -31.11158 -30.65056 -29.90689 -26.40704 -25.75470 -25.17908 -23.71466 -22.81120 -21.91951 -21.11293 -20.91089 -19.82741 -18.69200 -18.35341 -16.84134 -16.42915 -16.32450 -15.38025 -15.31226 -14.79335 -14.65059 -14.29639 -14.04873 -13.92424 -13.63446 -13.49280 -13.22540 -12.84057 -12.57245 -12.52120 -12.15191 -12.05617 -11.83727 -11.44222 -11.32729 -11.17127 -11.03936 -10.91922 -10.77712 -10.66153 -10.34564 -10.17780 -10.01291 -9.96856 -9.78508 -9.69769 -9.68637 -9.38909 -8.94654 -8.50998 -8.41756 -6.63520 -5.75867 -3.19132 0.41601 1.06547 1.47782 1.97113 3.35632 3.39868 3.45783 3.46969 3.53369 3.61028 3.78968 4.41058 4.51179 4.56298 4.66003 4.94281 5.11561 5.20320 5.23016 5.28958 5.35926 5.41102 5.46940 5.54281 5.65041 5.67320 5.69547 5.82941 5.94872 6.03624 6.13830 6.21351 6.33596 6.41175 6.50289 6.67167 6.70582 6.81475 6.96540 7.02376 7.36905 7.41526 7.71467 7.81720 7.94470 8.47313 8.50558 9.23483 9.86937 10.43792 11.32113 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.003382 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.876927 B = 8276.158271 C = 9141.222544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 H 0.082 0.918 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.255 4.255 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.175 3.825 15 C -0.154 4.154 16 C 0.159 3.841 17 H 0.074 0.926 18 N -0.688 5.688 19 C 0.590 3.410 20 O -0.546 6.546 21 C 0.022 3.978 22 C -0.231 4.231 23 S 0.195 5.805 24 C 0.061 3.939 25 C -0.085 4.085 26 C -0.169 4.169 27 C -0.160 4.160 28 N -0.435 5.435 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.015 0.985 33 H 0.057 0.943 34 H 0.254 0.746 35 H 0.019 0.981 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.411 0.589 40 H 0.189 0.811 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.320 -10.939 -8.289 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 H 0.101 0.899 4 C 0.024 3.976 5 N -0.313 5.313 6 C -0.384 4.384 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.049 3.951 15 C -0.195 4.195 16 C 0.055 3.945 17 H 0.092 0.908 18 N -0.339 5.339 19 C 0.373 3.627 20 O -0.424 6.424 21 C -0.113 4.113 22 C -0.373 4.373 23 S 0.453 5.547 24 C -0.219 4.219 25 C -0.106 4.106 26 C -0.207 4.207 27 C -0.198 4.198 28 N -0.150 5.150 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.248 0.752 40 H 0.206 0.794 41 H 0.155 0.845 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.145 -11.254 -8.991 20.901 hybrid contribution 1.082 1.167 0.885 1.821 sum -14.063 -10.087 -8.107 19.111 Atomic orbital electron populations 1.21769 0.95765 1.01441 1.01027 1.21945 0.94585 1.00682 0.96693 0.89926 1.20913 0.86124 0.96248 0.94280 1.44042 0.99131 1.71535 1.16580 1.19130 0.98575 1.11931 1.08780 0.91745 1.25038 0.99913 0.95308 0.99213 1.70038 1.22143 1.14448 1.47874 0.86383 0.81099 0.79096 0.80250 1.20909 1.21685 1.21045 1.20713 0.99170 0.93018 0.82205 1.22576 0.94101 1.01970 1.00807 1.20970 0.95219 0.80286 0.98074 0.90804 1.45963 1.65051 1.14002 1.08875 1.17018 0.77805 0.83362 0.84533 1.90776 1.51976 1.68849 1.30809 1.20544 1.05933 0.97516 0.87306 1.26579 1.07231 0.98287 1.05208 1.82605 1.58800 1.10995 1.02340 1.26176 1.03665 0.94540 0.97487 1.20437 1.00964 0.92466 0.96760 1.23152 1.02445 0.91934 1.03196 1.23145 0.90198 1.02256 1.04244 1.66831 1.12419 1.06131 1.29588 0.92998 0.92712 0.93326 0.96700 0.92492 0.93637 0.96334 0.89654 0.92728 0.91667 0.75168 0.79383 0.84481 0.88383 0.87105 0.87348 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.05 37.16 0.34 -1.70 16 2 C -0.12 -2.05 2.67 -90.50 -0.24 -2.30 16 3 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.15 3.12 5.50 -3.71 -0.02 3.10 16 5 N -0.59 -14.75 2.99 -172.32 -0.52 -15.27 16 6 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 7 H 0.06 1.73 7.89 -52.48 -0.41 1.31 16 8 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 9 N -0.90 -26.44 11.20 55.49 0.62 -25.82 16 10 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.17 4.30 5.05 -3.71 -0.02 4.28 16 15 C -0.15 -3.21 5.77 -26.61 -0.15 -3.36 16 16 C 0.16 2.91 2.21 -67.89 -0.15 2.76 16 17 H 0.07 1.35 7.57 -51.93 -0.39 0.95 16 18 N -0.69 -12.46 3.59 -54.89 -0.20 -12.66 16 19 C 0.59 10.80 7.76 -12.59 -0.10 10.70 16 20 O -0.55 -11.03 16.37 5.25 0.09 -10.94 16 21 C 0.02 0.35 6.70 -84.53 -0.57 -0.22 16 22 C -0.23 -2.99 10.62 29.65 0.31 -2.68 16 23 S 0.20 1.89 21.65 -107.50 -2.33 -0.44 16 24 C 0.06 0.73 6.99 -13.61 -0.10 0.64 16 25 C -0.08 -0.80 6.33 -91.77 -0.58 -1.38 16 26 C -0.17 -1.10 10.01 -26.74 -0.27 -1.37 16 27 C -0.16 -1.08 10.23 -26.73 -0.27 -1.36 16 28 N -0.44 -6.67 10.12 -8.51 -0.09 -6.76 16 29 H 0.05 0.75 7.54 -51.93 -0.39 0.36 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.02 0.32 6.64 -51.93 -0.34 -0.03 16 33 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 36 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.41 7.56 6.25 -40.82 -0.26 7.31 16 40 H 0.19 2.20 8.03 -52.49 -0.42 1.78 16 41 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.10 0.58 7.21 -51.92 -0.37 0.20 16 43 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -32.04 374.68 -10.51 -42.55 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.66 Total: 6.87 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.05 Total: 0.01 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.18 Total: -60.51 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.33 Total: -0.44 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.04 -10.51 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945640660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.643 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds