Wall clock time and date at job start Tue Mar 31 2020 19:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.52352 * 2 1 4 4 C 1.53189 * 109.50071 * 120.08405 * 2 1 3 5 5 N 1.46928 * 108.77421 * 174.58396 * 4 2 1 6 6 C 1.36934 * 120.62803 * 126.37199 * 5 4 2 7 7 H 1.08007 * 120.00030 * 331.83906 * 6 5 4 8 8 C 1.38810 * 120.00325 * 151.84107 * 6 5 4 9 9 N 1.31622 * 119.99621 * 343.08083 * 8 6 5 10 10 Si 1.86797 * 120.00353 * 163.07753 * 8 6 5 11 11 H 1.48498 * 109.47176 * 59.99997 * 10 8 6 12 12 H 1.48509 * 109.47271 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47027 * 300.00030 * 10 8 6 14 14 C 1.46925 * 118.73952 * 306.39055 * 5 4 2 15 15 C 1.53185 * 108.77572 * 53.61141 * 14 5 4 16 16 C 1.53040 * 109.31171 * 305.36251 * 15 14 5 17 17 H 1.09004 * 109.46237 * 181.36883 * 16 15 14 18 18 N 1.46496 * 109.46245 * 301.34236 * 16 15 14 19 19 C 1.34774 * 120.00444 * 275.00208 * 18 16 15 20 20 O 1.21633 * 119.99570 * 359.97438 * 19 18 16 21 21 C 1.47268 * 120.00211 * 179.97438 * 19 18 16 22 22 C 1.35206 * 123.14218 * 180.02562 * 21 19 18 23 23 S 1.70937 * 108.82798 * 179.97438 * 22 21 19 24 24 C 1.70771 * 91.12964 * 0.02562 * 23 22 21 25 25 C 1.50696 * 124.72094 * 180.02562 * 24 23 22 26 26 C 1.52995 * 117.50084 * 8.59369 * 25 24 23 27 27 C 1.52997 * 60.00492 * 252.51120 * 26 25 24 28 28 N 1.28648 * 110.55750 * 0.02562 * 24 23 22 29 29 H 1.09000 * 109.47387 * 180.08354 * 1 2 3 30 30 H 1.09001 * 109.46724 * 300.07957 * 1 2 3 31 31 H 1.08998 * 109.47225 * 60.07817 * 1 2 3 32 32 H 1.09003 * 109.58876 * 54.79824 * 4 2 1 33 33 H 1.09000 * 109.70557 * 294.44166 * 4 2 1 34 34 H 0.97005 * 119.99717 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.58585 * 293.81956 * 14 5 4 36 36 H 1.09001 * 109.58491 * 173.39858 * 14 5 4 37 37 H 1.08999 * 109.50002 * 185.41090 * 15 14 5 38 38 H 1.09003 * 109.52547 * 65.32670 * 15 14 5 39 39 H 0.97006 * 119.99457 * 95.00214 * 18 16 15 40 40 H 1.07995 * 125.58411 * 0.24777 * 22 21 19 41 41 H 1.09000 * 115.55060 * 154.30420 * 25 24 23 42 42 H 1.09009 * 117.49799 * 0.02562 * 26 25 24 43 43 H 1.09000 * 117.50168 * 145.02249 * 26 25 24 44 44 H 1.08995 * 117.49933 * 252.51370 * 27 26 25 45 45 H 1.08994 * 117.50089 * 107.48528 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5047 -0.8292 1.1694 6 6 4.2937 -0.3786 2.1938 7 1 3.9500 0.4268 2.8261 8 6 5.5352 -0.9569 2.4198 9 7 5.8214 -2.1282 1.8919 10 14 6.7997 -0.0729 3.4728 11 1 6.2487 0.1377 4.8356 12 1 8.0338 -0.8945 3.5588 13 1 7.1221 1.2411 2.8607 14 6 4.1053 -1.4267 -0.0310 15 6 3.5708 -0.6950 -1.2662 16 6 2.0408 -0.7231 -1.2484 17 1 1.6580 -0.2242 -2.1388 18 7 1.5783 -2.1130 -1.2310 19 6 1.4488 -2.7947 -2.3864 20 8 1.7155 -2.2557 -3.4436 21 6 0.9843 -4.1922 -2.3687 22 6 0.8322 -4.9347 -3.4883 23 16 0.2804 -6.4913 -3.0472 24 6 0.2838 -6.0611 -1.3946 25 6 -0.1140 -6.9793 -0.2678 26 6 -0.3572 -8.4509 -0.6080 27 6 -1.5390 -7.5363 -0.2799 28 7 0.6732 -4.8440 -1.2454 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6053 -1.7217 1.2979 33 1 1.7638 -0.1602 2.1402 34 1 6.6889 -2.5325 2.0501 35 1 3.8375 -2.4818 -0.0870 36 1 5.1896 -1.3246 0.0134 37 1 3.9333 -1.1896 -2.1673 38 1 3.9158 0.3390 -1.2548 39 1 1.3652 -2.5427 -0.3878 40 1 1.0314 -4.6007 -4.4958 41 1 0.3297 -6.7532 0.7018 42 1 -0.2291 -8.7551 -1.6470 43 1 -0.0734 -9.1935 0.1376 44 1 -2.0325 -7.6771 0.6817 45 1 -2.1887 -7.2386 -1.1029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000945640660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:41 Heat of formation + Delta-G solvation = 31.662393 kcal Electronic energy + Delta-G solvation = -27117.766236 eV Core-core repulsion = 23455.438357 eV Total energy + Delta-G solvation = -3662.327879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.75502 -40.48502 -39.04546 -37.93763 -36.03402 -34.00433 -32.92641 -31.98668 -31.39251 -27.64357 -27.42196 -26.68052 -24.93696 -23.62005 -23.31851 -22.77604 -21.91321 -20.99307 -20.17164 -19.56327 -18.72269 -17.57127 -17.29185 -16.88718 -16.62356 -16.53147 -15.76367 -15.67476 -15.53618 -15.31535 -15.06203 -14.78548 -14.57498 -14.46985 -14.24596 -13.57450 -13.29492 -13.19630 -13.02777 -12.97358 -12.72889 -12.55694 -12.40227 -12.39208 -12.24581 -11.98743 -11.88947 -11.72116 -11.53189 -11.50622 -11.25695 -11.13484 -10.86199 -10.59523 -10.54407 -10.12783 -9.74443 -8.68748 -7.87744 -5.34177 -0.56423 0.18715 0.52271 0.84711 1.45815 1.48955 1.55268 2.16409 2.29195 2.50524 2.75092 2.98191 3.27158 3.59721 3.66262 3.75633 3.81187 4.02726 4.03105 4.07871 4.08934 4.13751 4.36060 4.40355 4.56132 4.62641 4.70214 4.73571 4.75067 4.77845 4.93597 4.97741 5.00625 5.05907 5.08468 5.13346 5.20843 5.25719 5.38657 5.45349 5.52459 5.62724 5.69630 6.29615 6.36989 6.59875 7.09193 7.12637 7.83631 8.36558 9.18318 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.003382 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.876927 B = 8276.158271 C = 9141.222544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 H 0.085 0.915 4 C 0.150 3.850 5 N -0.606 5.606 6 C -0.264 4.264 7 H 0.071 0.929 8 C -0.050 4.050 9 N -0.936 5.936 10 Si 0.968 3.032 11 H -0.273 1.273 12 H -0.296 1.296 13 H -0.279 1.279 14 C 0.190 3.810 15 C -0.143 4.143 16 C 0.163 3.837 17 H 0.083 0.917 18 N -0.688 5.688 19 C 0.586 3.414 20 O -0.572 6.572 21 C -0.012 4.012 22 C -0.242 4.242 23 S 0.298 5.702 24 C 0.044 3.956 25 C -0.117 4.117 26 C -0.152 4.152 27 C -0.147 4.147 28 N -0.474 5.474 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.012 0.988 33 H 0.061 0.939 34 H 0.248 0.752 35 H -0.009 1.009 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.408 0.592 40 H 0.197 0.803 41 H 0.123 0.877 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.355 -11.710 -8.607 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 H 0.103 0.897 4 C 0.025 3.975 5 N -0.329 5.329 6 C -0.394 4.394 7 H 0.089 0.911 8 C -0.245 4.245 9 N -0.581 5.581 10 Si 0.796 3.204 11 H -0.198 1.198 12 H -0.223 1.223 13 H -0.205 1.205 14 C 0.064 3.936 15 C -0.183 4.183 16 C 0.059 3.941 17 H 0.101 0.899 18 N -0.338 5.338 19 C 0.371 3.629 20 O -0.453 6.453 21 C -0.147 4.147 22 C -0.384 4.384 23 S 0.557 5.443 24 C -0.234 4.234 25 C -0.139 4.139 26 C -0.190 4.190 27 C -0.185 4.185 28 N -0.190 5.190 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.030 0.970 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.009 0.991 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.246 0.754 40 H 0.214 0.786 41 H 0.141 0.859 42 H 0.126 0.874 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.224 -12.029 -9.303 22.976 hybrid contribution 1.650 1.263 0.959 2.289 sum -15.574 -10.766 -8.345 20.690 Atomic orbital electron populations 1.21687 0.92881 1.01817 1.02650 1.21802 0.96816 0.99874 0.94085 0.89650 1.21056 0.83624 0.96589 0.96267 1.44254 1.00941 1.71468 1.16217 1.19516 0.99157 1.11812 1.08950 0.91146 1.25818 1.01813 0.95938 1.00945 1.70210 1.22164 1.16036 1.49739 0.85340 0.78299 0.77789 0.79010 1.19819 1.22273 1.20469 1.20358 0.97085 0.92088 0.84030 1.22401 0.96209 1.01322 0.98355 1.20900 0.93191 0.80984 0.99040 0.89923 1.45933 1.65063 1.13859 1.08937 1.17422 0.77057 0.84445 0.83963 1.90736 1.53311 1.69835 1.31441 1.20283 1.08801 0.96871 0.88734 1.26914 1.06226 1.00268 1.05025 1.82148 1.55929 1.07257 0.99007 1.26710 1.02594 0.94083 1.00023 1.20529 1.03556 0.94146 0.95697 1.23307 1.01153 0.90263 1.04231 1.23277 0.89169 1.00859 1.05245 1.66803 1.14280 1.07815 1.30054 0.93263 0.90999 0.91779 0.97028 0.92003 0.94277 0.99056 0.93292 0.93410 0.91266 0.75446 0.78561 0.85938 0.87371 0.85560 0.86031 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.05 71.98 0.65 -2.88 16 2 C -0.11 -3.56 2.67 -10.72 -0.03 -3.59 16 3 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 4 C 0.15 6.20 5.50 86.36 0.48 6.68 16 5 N -0.61 -30.96 2.99 -699.11 -2.09 -33.05 16 6 C -0.26 -14.70 9.58 84.03 0.81 -13.90 16 7 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 8 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 9 N -0.94 -56.98 11.20 21.65 0.24 -56.74 16 10 Si 0.97 45.61 29.59 68.60 2.03 47.64 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.19 9.80 5.05 86.36 0.44 10.24 16 15 C -0.14 -6.10 5.77 30.67 0.18 -5.93 16 16 C 0.16 6.02 2.21 45.02 0.10 6.12 16 17 H 0.08 2.96 7.57 -2.39 -0.02 2.94 16 18 N -0.69 -25.57 3.59 -445.81 -1.60 -27.17 16 19 C 0.59 22.05 7.76 86.62 0.67 22.72 16 20 O -0.57 -23.61 16.37 -4.14 -0.07 -23.68 16 21 C -0.01 -0.39 6.70 40.56 0.27 -0.12 16 22 C -0.24 -6.08 10.62 67.12 0.71 -5.37 16 23 S 0.30 5.10 21.65 -56.49 -1.22 3.88 16 24 C 0.04 1.04 6.99 88.57 0.62 1.66 16 25 C -0.12 -2.09 6.33 -11.54 -0.07 -2.16 16 26 C -0.15 -1.56 10.01 30.59 0.31 -1.26 16 27 C -0.15 -1.63 10.23 30.60 0.31 -1.32 16 28 N -0.47 -14.82 10.12 -180.84 -1.83 -16.65 16 29 H 0.05 1.35 7.54 -2.39 -0.02 1.33 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.01 0.50 6.64 -2.39 -0.02 0.49 16 33 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 34 H 0.25 14.73 8.31 -92.70 -0.77 13.95 16 35 H -0.01 -0.48 7.74 -2.39 -0.02 -0.50 16 36 H 0.05 2.86 6.06 -2.39 -0.01 2.85 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 2.87 8.14 -2.39 -0.02 2.86 16 39 H 0.41 15.59 6.25 -92.70 -0.58 15.02 16 40 H 0.20 4.44 8.03 -2.91 -0.02 4.41 16 41 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.11 0.88 7.21 -2.38 -0.02 0.87 16 43 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -72.16 374.68 1.74 -70.42 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.43 Total: 26.89 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 5.86 Total: 8.48 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -5.28 Total: -133.62 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.07 Total: -23.68 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.22 Total: 3.88 kcal Total: -72.16 1.74 -70.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945640660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.079 kcal (2) G-P(sol) polarization free energy of solvation -72.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds