Wall clock time and date at job start Tue Mar 31 2020 19:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49917 * 2 1 4 4 C 1.53203 * 109.49698 * 120.09728 * 2 1 3 5 5 N 1.46923 * 108.77613 * 174.58715 * 4 2 1 6 6 C 1.36930 * 120.63058 * 126.36413 * 5 4 2 7 7 H 1.07997 * 120.00713 * 331.83726 * 6 5 4 8 8 C 1.38814 * 119.99806 * 151.82924 * 6 5 4 9 9 N 1.31627 * 119.99987 * 343.09267 * 8 6 5 10 10 Si 1.86799 * 119.99883 * 163.08659 * 8 6 5 11 11 H 1.48505 * 109.47105 * 90.00789 * 10 8 6 12 12 H 1.48505 * 109.47268 * 210.00080 * 10 8 6 13 13 H 1.48493 * 109.47507 * 330.00306 * 10 8 6 14 14 C 1.46930 * 118.73767 * 306.39180 * 5 4 2 15 15 C 1.53171 * 108.76829 * 53.60867 * 14 5 4 16 16 C 1.53036 * 109.49850 * 239.93451 * 2 1 3 17 17 H 1.09002 * 109.45821 * 298.70401 * 16 2 1 18 18 N 1.46496 * 109.46121 * 58.67519 * 16 2 1 19 19 C 1.34771 * 120.00161 * 205.02705 * 18 16 2 20 20 O 1.21630 * 120.00393 * 0.02562 * 19 18 16 21 21 C 1.47269 * 120.00088 * 179.97438 * 19 18 16 22 22 C 1.35208 * 123.14225 * 179.70496 * 21 19 18 23 23 S 1.70945 * 108.82364 * 179.90688 * 22 21 19 24 24 C 1.70765 * 91.13029 * 0.30521 * 23 22 21 25 25 C 1.50703 * 124.71795 * 179.82325 * 24 23 22 26 26 C 1.53000 * 117.50020 * 8.61974 * 25 24 23 27 27 C 1.52999 * 60.00127 * 252.51080 * 26 25 24 28 28 N 1.28642 * 110.56336 * 359.82155 * 24 23 22 29 29 H 1.08998 * 109.46941 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47313 * 300.06338 * 1 2 3 31 31 H 1.08996 * 109.47167 * 60.06236 * 1 2 3 32 32 H 1.09006 * 109.58288 * 294.37315 * 4 2 1 33 33 H 1.08996 * 109.58366 * 54.79774 * 4 2 1 34 34 H 0.96996 * 119.99377 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.58611 * 173.39491 * 14 5 4 36 36 H 1.08997 * 109.58619 * 293.82010 * 14 5 4 37 37 H 1.08999 * 109.47393 * 185.40767 * 15 14 5 38 38 H 1.09000 * 109.50202 * 65.31644 * 15 14 5 39 39 H 0.96997 * 119.99858 * 25.03029 * 18 16 2 40 40 H 1.07991 * 125.58678 * 0.02768 * 22 21 19 41 41 H 1.09003 * 115.54894 * 154.32702 * 25 24 23 42 42 H 1.09001 * 117.49759 * 359.97438 * 26 25 24 43 43 H 1.09002 * 117.50169 * 145.02218 * 26 25 24 44 44 H 1.08993 * 117.50059 * 252.50983 * 27 26 25 45 45 H 1.09002 * 117.51571 * 107.47819 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7242 1.2495 5 7 3.5046 -0.8295 1.1695 6 6 4.2935 -0.3791 2.1940 7 1 3.9500 0.4262 2.8264 8 6 5.5349 -0.9577 2.4200 9 7 5.8211 -2.1289 1.8920 10 14 6.7994 -0.0740 3.4735 11 1 6.6300 -0.4771 4.8927 12 1 8.1650 -0.4360 3.0158 13 1 6.6085 1.3934 3.3495 14 6 4.1053 -1.4267 -0.0311 15 6 3.5709 -0.6947 -1.2658 16 6 2.0408 -0.7227 -1.2485 17 1 1.6967 -1.7569 -1.2357 18 7 1.5268 -0.0521 -2.4453 19 6 1.3983 -0.7371 -3.5988 20 8 1.7086 -1.9122 -3.6462 21 6 0.8810 -0.0631 -4.8017 22 6 0.7317 -0.6869 -5.9920 23 16 0.1063 0.4298 -7.1252 24 6 0.0887 1.6664 -5.9478 25 6 -0.3696 3.0806 -6.1951 26 6 -1.0399 3.3815 -7.5372 27 6 0.3762 3.8892 -7.2586 28 7 0.5210 1.2230 -4.8202 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8905 32 1 1.7638 -0.1585 2.1389 33 1 1.6052 -1.7220 1.2976 34 1 6.6887 -2.5330 2.0496 35 1 5.1896 -1.3247 0.0135 36 1 3.8376 -2.4818 -0.0873 37 1 3.9337 -1.1892 -2.1668 38 1 3.9159 0.3392 -1.2536 39 1 1.2790 0.8849 -2.4074 40 1 0.9670 -1.7215 -6.1932 41 1 -0.7339 3.6168 -5.3188 42 1 -1.1490 2.5567 -8.2414 43 1 -1.8455 4.1157 -7.5440 44 1 0.5024 4.9573 -7.0821 45 1 1.1987 3.3983 -7.7790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000945640661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:45 Heat of formation + Delta-G solvation = 48.523963 kcal Electronic energy + Delta-G solvation = -26437.116078 eV Core-core repulsion = 22775.519372 eV Total energy + Delta-G solvation = -3661.596706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.64133 -39.17888 -37.77108 -37.19232 -34.50692 -32.59690 -31.17551 -30.78387 -29.78846 -26.56322 -25.81292 -25.13014 -23.62769 -22.96581 -21.92037 -21.01792 -20.88440 -19.94251 -19.28238 -18.41968 -16.89769 -16.60913 -16.38689 -15.70239 -15.35296 -15.03603 -14.73731 -14.31490 -14.05181 -13.85860 -13.73189 -13.46598 -13.16318 -12.77303 -12.74732 -12.61646 -12.29451 -12.04921 -11.98622 -11.44515 -11.33275 -11.25949 -11.09278 -11.03441 -10.79016 -10.60837 -10.31177 -10.22205 -10.14999 -10.01624 -9.90665 -9.86189 -9.74825 -9.45883 -9.09406 -8.62558 -8.38293 -6.64741 -5.75720 -3.18558 0.26227 0.90671 1.32666 1.80283 3.21079 3.32904 3.39613 3.46522 3.48767 3.49326 3.62463 4.24118 4.39502 4.49464 4.51774 4.76509 5.00074 5.07840 5.10241 5.19498 5.31586 5.36033 5.44269 5.48649 5.53351 5.56757 5.64439 5.68604 5.95229 6.04263 6.15859 6.29775 6.33090 6.42526 6.50633 6.65026 6.71409 6.81880 6.95413 7.00518 7.19103 7.40970 7.70421 7.79683 7.82397 8.38069 8.48051 9.23843 9.87284 10.44236 11.32902 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.002473 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.021876 B =11320.070374 C =11517.278786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 H 0.072 0.928 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.174 3.826 15 C -0.148 4.148 16 C 0.156 3.844 17 H 0.083 0.917 18 N -0.701 5.701 19 C 0.588 3.412 20 O -0.535 6.535 21 C 0.019 3.981 22 C -0.229 4.229 23 S 0.201 5.799 24 C 0.056 3.944 25 C -0.085 4.085 26 C -0.169 4.169 27 C -0.159 4.159 28 N -0.440 5.440 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.254 0.746 35 H 0.090 0.910 36 H 0.021 0.979 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.404 0.596 40 H 0.190 0.810 41 H 0.135 0.865 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.167 10.396 -21.094 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.048 3.952 15 C -0.188 4.188 16 C 0.053 3.947 17 H 0.101 0.899 18 N -0.350 5.350 19 C 0.370 3.630 20 O -0.412 6.412 21 C -0.116 4.116 22 C -0.371 4.371 23 S 0.459 5.541 24 C -0.223 4.223 25 C -0.107 4.107 26 C -0.207 4.207 27 C -0.198 4.198 28 N -0.155 5.155 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.239 0.761 40 H 0.208 0.792 41 H 0.153 0.847 42 H 0.117 0.883 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.003 9.715 -21.604 28.039 hybrid contribution 0.986 0.320 1.350 1.702 sum -14.017 10.035 -20.253 26.596 Atomic orbital electron populations 1.21774 0.95789 1.01537 1.00923 1.21971 0.94555 1.00648 0.96336 0.91002 1.20897 0.85960 0.96607 0.93723 1.44095 0.99294 1.71470 1.16608 1.19155 0.98540 1.11904 1.08694 0.91690 1.25061 0.99971 0.95356 0.99255 1.70040 1.22149 1.14497 1.47872 0.86314 0.81127 0.79398 0.80019 1.21401 1.21584 1.20508 1.20756 0.99407 0.93096 0.81950 1.22585 0.93763 1.01628 1.00808 1.21136 0.94666 0.96873 0.82050 0.89884 1.46125 1.64267 1.14760 1.09824 1.17047 0.78192 0.85791 0.81944 1.90829 1.50778 1.15251 1.84343 1.20592 1.05787 0.89271 0.95924 1.26634 1.06614 1.07111 0.96750 1.82676 1.56427 1.00171 1.14851 1.26176 1.03534 1.00216 0.92346 1.20411 1.05593 0.89164 0.95505 1.23161 0.96895 1.03925 0.96760 1.23164 0.95419 1.00704 1.00529 1.66818 1.12246 1.11567 1.24822 0.92939 0.92708 0.93380 0.92344 0.96152 0.93605 0.89234 0.96098 0.92806 0.92581 0.76111 0.79242 0.84684 0.88328 0.87106 0.87289 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.03 37.16 0.34 -1.72 16 2 C -0.11 -2.00 2.46 -90.50 -0.22 -2.22 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 4 C 0.16 3.28 5.80 -3.71 -0.02 3.26 16 5 N -0.59 -15.07 2.99 -172.33 -0.52 -15.59 16 6 C -0.25 -7.01 9.58 -15.06 -0.14 -7.16 16 7 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 8 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 9 N -0.90 -26.65 11.20 55.49 0.62 -26.03 16 10 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.17 4.34 5.30 -3.72 -0.02 4.32 16 15 C -0.15 -3.08 5.65 -26.62 -0.15 -3.24 16 16 C 0.16 2.88 1.88 -67.89 -0.13 2.76 16 17 H 0.08 1.70 7.58 -51.93 -0.39 1.30 16 18 N -0.70 -11.36 4.36 -54.89 -0.24 -11.60 16 19 C 0.59 9.96 7.76 -12.59 -0.10 9.86 16 20 O -0.53 -10.67 16.37 5.25 0.09 -10.59 16 21 C 0.02 0.27 6.70 -84.52 -0.57 -0.30 16 22 C -0.23 -2.64 10.62 29.65 0.31 -2.33 16 23 S 0.20 1.63 21.65 -107.50 -2.33 -0.70 16 24 C 0.06 0.55 6.99 -13.61 -0.10 0.46 16 25 C -0.09 -0.59 6.33 -91.77 -0.58 -1.18 16 26 C -0.17 -0.76 10.01 -26.73 -0.27 -1.03 16 27 C -0.16 -0.83 10.23 -26.73 -0.27 -1.10 16 28 N -0.44 -5.60 10.12 -8.51 -0.09 -5.69 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.64 7.36 -51.93 -0.38 0.26 16 32 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.09 2.48 6.06 -51.93 -0.31 2.16 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.40 5.92 7.83 -40.82 -0.32 5.60 16 40 H 0.19 2.02 8.03 -52.49 -0.42 1.60 16 41 H 0.14 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.10 0.40 7.21 -51.93 -0.37 0.03 16 43 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -32.49 378.62 -10.60 -43.09 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.82 Total: 4.13 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.00 Total: 0.37 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.22 Total: -58.90 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.33 Total: -0.70 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.49 -10.60 -43.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945640661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.616 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds