Wall clock time and date at job start Tue Mar 31 2020 19:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49917 * 2 1 4 4 C 1.53203 * 109.49698 * 120.09728 * 2 1 3 5 5 N 1.46923 * 108.77613 * 174.58715 * 4 2 1 6 6 C 1.36930 * 120.63058 * 126.36413 * 5 4 2 7 7 H 1.07997 * 120.00713 * 331.83726 * 6 5 4 8 8 C 1.38814 * 119.99806 * 151.82924 * 6 5 4 9 9 N 1.31627 * 119.99987 * 343.09267 * 8 6 5 10 10 Si 1.86799 * 119.99883 * 163.08659 * 8 6 5 11 11 H 1.48505 * 109.47105 * 90.00789 * 10 8 6 12 12 H 1.48505 * 109.47268 * 210.00080 * 10 8 6 13 13 H 1.48493 * 109.47507 * 330.00306 * 10 8 6 14 14 C 1.46930 * 118.73767 * 306.39180 * 5 4 2 15 15 C 1.53171 * 108.76829 * 53.60867 * 14 5 4 16 16 C 1.53036 * 109.49850 * 239.93451 * 2 1 3 17 17 H 1.09002 * 109.45821 * 298.70401 * 16 2 1 18 18 N 1.46496 * 109.46121 * 58.67519 * 16 2 1 19 19 C 1.34771 * 120.00161 * 205.02705 * 18 16 2 20 20 O 1.21630 * 120.00393 * 0.02562 * 19 18 16 21 21 C 1.47269 * 120.00088 * 179.97438 * 19 18 16 22 22 C 1.35208 * 123.14225 * 179.70496 * 21 19 18 23 23 S 1.70945 * 108.82364 * 179.90688 * 22 21 19 24 24 C 1.70765 * 91.13029 * 0.30521 * 23 22 21 25 25 C 1.50703 * 124.71795 * 179.82325 * 24 23 22 26 26 C 1.53000 * 117.50020 * 8.61974 * 25 24 23 27 27 C 1.52999 * 60.00127 * 252.51080 * 26 25 24 28 28 N 1.28642 * 110.56336 * 359.82155 * 24 23 22 29 29 H 1.08998 * 109.46941 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47313 * 300.06338 * 1 2 3 31 31 H 1.08996 * 109.47167 * 60.06236 * 1 2 3 32 32 H 1.09006 * 109.58288 * 294.37315 * 4 2 1 33 33 H 1.08996 * 109.58366 * 54.79774 * 4 2 1 34 34 H 0.96996 * 119.99377 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.58611 * 173.39491 * 14 5 4 36 36 H 1.08997 * 109.58619 * 293.82010 * 14 5 4 37 37 H 1.08999 * 109.47393 * 185.40767 * 15 14 5 38 38 H 1.09000 * 109.50202 * 65.31644 * 15 14 5 39 39 H 0.96997 * 119.99858 * 25.03029 * 18 16 2 40 40 H 1.07991 * 125.58678 * 0.02768 * 22 21 19 41 41 H 1.09003 * 115.54894 * 154.32702 * 25 24 23 42 42 H 1.09001 * 117.49759 * 359.97438 * 26 25 24 43 43 H 1.09002 * 117.50169 * 145.02218 * 26 25 24 44 44 H 1.08993 * 117.50059 * 252.50983 * 27 26 25 45 45 H 1.09002 * 117.51571 * 107.47819 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7242 1.2495 5 7 3.5046 -0.8295 1.1695 6 6 4.2935 -0.3791 2.1940 7 1 3.9500 0.4262 2.8264 8 6 5.5349 -0.9577 2.4200 9 7 5.8211 -2.1289 1.8920 10 14 6.7994 -0.0740 3.4735 11 1 6.6300 -0.4771 4.8927 12 1 8.1650 -0.4360 3.0158 13 1 6.6085 1.3934 3.3495 14 6 4.1053 -1.4267 -0.0311 15 6 3.5709 -0.6947 -1.2658 16 6 2.0408 -0.7227 -1.2485 17 1 1.6967 -1.7569 -1.2357 18 7 1.5268 -0.0521 -2.4453 19 6 1.3983 -0.7371 -3.5988 20 8 1.7086 -1.9122 -3.6462 21 6 0.8810 -0.0631 -4.8017 22 6 0.7317 -0.6869 -5.9920 23 16 0.1063 0.4298 -7.1252 24 6 0.0887 1.6664 -5.9478 25 6 -0.3696 3.0806 -6.1951 26 6 -1.0399 3.3815 -7.5372 27 6 0.3762 3.8892 -7.2586 28 7 0.5210 1.2230 -4.8202 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8905 32 1 1.7638 -0.1585 2.1389 33 1 1.6052 -1.7220 1.2976 34 1 6.6887 -2.5330 2.0496 35 1 5.1896 -1.3247 0.0135 36 1 3.8376 -2.4818 -0.0873 37 1 3.9337 -1.1892 -2.1668 38 1 3.9159 0.3392 -1.2536 39 1 1.2790 0.8849 -2.4074 40 1 0.9670 -1.7215 -6.1932 41 1 -0.7339 3.6168 -5.3188 42 1 -1.1490 2.5567 -8.2414 43 1 -1.8455 4.1157 -7.5440 44 1 0.5024 4.9573 -7.0821 45 1 1.1987 3.3983 -7.7790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000945640661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:44 Heat of formation + Delta-G solvation = 28.196722 kcal Electronic energy + Delta-G solvation = -26437.997533 eV Core-core repulsion = 22775.519372 eV Total energy + Delta-G solvation = -3662.478161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72498 -40.39587 -39.10158 -37.93979 -36.25620 -34.23366 -32.97576 -31.92220 -31.36319 -27.71878 -27.44704 -26.53038 -24.91900 -23.42190 -23.28901 -22.67530 -21.82534 -21.27101 -20.61404 -19.46701 -18.73250 -17.77871 -17.25202 -16.97335 -16.71492 -16.48134 -15.82889 -15.64570 -15.51342 -15.19297 -15.05491 -14.76920 -14.56934 -14.48504 -14.27967 -13.63769 -13.29244 -13.11358 -13.03100 -13.01959 -12.77376 -12.62725 -12.38872 -12.32744 -12.12184 -12.08515 -11.88630 -11.73144 -11.61691 -11.51934 -11.40066 -11.13302 -10.89483 -10.60772 -10.58468 -10.15050 -9.76838 -8.73099 -7.89077 -5.35631 -0.57997 0.16765 0.51965 0.81708 1.46193 1.47957 1.57927 2.11003 2.21629 2.50310 2.71696 2.99461 3.26858 3.56293 3.64913 3.71594 3.82762 3.97703 4.02595 4.07456 4.11517 4.12552 4.32668 4.40144 4.55636 4.64460 4.68478 4.72751 4.77321 4.81536 4.86015 4.96012 5.02202 5.05843 5.09457 5.10627 5.21809 5.24585 5.33863 5.45641 5.46893 5.61355 5.66246 6.25016 6.36483 6.58014 7.08560 7.11082 7.81454 8.35098 9.18265 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.002473 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.021876 B =11320.070374 C =11517.278786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.151 3.849 5 N -0.609 5.609 6 C -0.263 4.263 7 H 0.073 0.927 8 C -0.054 4.054 9 N -0.938 5.938 10 Si 0.970 3.030 11 H -0.283 1.283 12 H -0.295 1.295 13 H -0.268 1.268 14 C 0.185 3.815 15 C -0.132 4.132 16 C 0.168 3.832 17 H 0.061 0.939 18 N -0.691 5.691 19 C 0.585 3.415 20 O -0.575 6.575 21 C -0.008 4.008 22 C -0.245 4.245 23 S 0.295 5.705 24 C 0.046 3.954 25 C -0.109 4.109 26 C -0.151 4.151 27 C -0.156 4.156 28 N -0.466 5.466 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.013 0.987 34 H 0.250 0.750 35 H 0.057 0.943 36 H -0.008 1.008 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.414 0.586 40 H 0.192 0.808 41 H 0.135 0.865 42 H 0.105 0.895 43 H 0.130 0.870 44 H 0.122 0.878 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 13.196 -22.896 31.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.120 4.120 3 H 0.095 0.905 4 C 0.025 3.975 5 N -0.332 5.332 6 C -0.393 4.393 7 H 0.091 0.909 8 C -0.249 4.249 9 N -0.584 5.584 10 Si 0.798 3.202 11 H -0.209 1.209 12 H -0.221 1.221 13 H -0.192 1.192 14 C 0.058 3.942 15 C -0.172 4.172 16 C 0.063 3.937 17 H 0.079 0.921 18 N -0.340 5.340 19 C 0.370 3.630 20 O -0.455 6.455 21 C -0.143 4.143 22 C -0.388 4.388 23 S 0.554 5.446 24 C -0.232 4.232 25 C -0.131 4.131 26 C -0.189 4.189 27 C -0.195 4.195 28 N -0.182 5.182 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.031 0.969 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.010 0.990 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.251 0.749 40 H 0.209 0.791 41 H 0.153 0.847 42 H 0.123 0.877 43 H 0.148 0.852 44 H 0.140 0.860 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.013 12.567 -23.428 31.563 hybrid contribution 1.518 -0.542 1.774 2.397 sum -15.494 12.025 -21.654 29.216 Atomic orbital electron populations 1.21699 0.92831 1.01896 1.02648 1.21772 0.96822 0.99812 0.93641 0.90499 1.21071 0.83525 0.96833 0.96039 1.44331 1.01106 1.71441 1.16311 1.19546 0.99075 1.11819 1.08822 0.90939 1.25889 1.01957 0.96012 1.01035 1.70210 1.22288 1.16129 1.49769 0.85240 0.78066 0.78677 0.78238 1.20939 1.22114 1.19236 1.20452 0.97693 0.92136 0.83916 1.22336 0.95778 1.00792 0.98316 1.20781 0.92749 0.96341 0.83817 0.92050 1.45878 1.64021 1.15074 1.09049 1.17503 0.77288 0.85420 0.82765 1.90798 1.52545 1.17022 1.85104 1.20179 1.08391 0.90408 0.95301 1.26915 1.06185 1.08221 0.97461 1.82309 1.53639 0.97023 1.11670 1.26753 1.02196 1.01900 0.92367 1.20558 1.07756 0.87949 0.96820 1.23308 0.97008 1.04119 0.94496 1.23281 0.95906 1.01186 0.99137 1.66788 1.13777 1.10936 1.26649 0.93300 0.90778 0.91833 0.91401 0.96941 0.94117 0.92419 0.98997 0.93506 0.92288 0.74863 0.79113 0.84714 0.87682 0.85223 0.86016 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.03 71.98 0.65 -2.93 16 2 C -0.10 -3.42 2.46 -10.71 -0.03 -3.45 16 3 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 4 C 0.15 6.41 5.80 86.37 0.50 6.91 16 5 N -0.61 -31.76 2.99 -699.12 -2.09 -33.85 16 6 C -0.26 -14.71 9.58 84.04 0.81 -13.91 16 7 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 8 C -0.05 -3.09 4.92 84.86 0.42 -2.67 16 9 N -0.94 -57.59 11.20 21.65 0.24 -57.35 16 10 Si 0.97 45.72 29.59 68.60 2.03 47.75 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 C 0.18 9.70 5.30 86.35 0.46 10.16 16 15 C -0.13 -5.73 5.65 30.66 0.17 -5.55 16 16 C 0.17 6.31 1.88 45.02 0.08 6.40 16 17 H 0.06 2.61 7.58 -2.39 -0.02 2.59 16 18 N -0.69 -22.43 4.36 -445.83 -1.94 -24.37 16 19 C 0.59 20.22 7.76 86.62 0.67 20.89 16 20 O -0.57 -23.85 16.37 -4.13 -0.07 -23.92 16 21 C -0.01 -0.22 6.70 40.56 0.27 0.06 16 22 C -0.25 -5.43 10.62 67.12 0.71 -4.71 16 23 S 0.29 3.97 21.65 -56.49 -1.22 2.75 16 24 C 0.05 0.82 6.99 88.58 0.62 1.43 16 25 C -0.11 -1.24 6.33 -11.54 -0.07 -1.32 16 26 C -0.15 -0.81 10.01 30.59 0.31 -0.50 16 27 C -0.16 -1.15 10.23 30.59 0.31 -0.83 16 28 N -0.47 -11.38 10.12 -180.83 -1.83 -13.21 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.54 7.36 -2.39 -0.02 1.52 16 32 H 0.07 2.72 7.93 -2.38 -0.02 2.70 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.06 3.38 6.06 -2.39 -0.01 3.36 16 36 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.41 11.81 7.83 -92.71 -0.73 11.08 16 40 H 0.19 4.03 8.03 -2.92 -0.02 4.01 16 41 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.10 0.42 7.21 -2.39 -0.02 0.40 16 43 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -73.51 378.62 1.28 -72.23 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.28 Total: 20.01 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.89 Total: 9.97 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -5.62 Total: -128.79 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.07 Total: -23.92 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.22 Total: 2.75 kcal Total: -73.51 1.28 -72.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945640661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.430 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds