Wall clock time and date at job start Tue Mar 31 2020 19:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.49411 * 2 1 4 4 C 1.53195 * 109.52495 * 239.92541 * 2 1 3 5 5 N 1.46926 * 108.77646 * 185.39786 * 4 2 1 6 6 C 1.36943 * 120.62632 * 233.58304 * 5 4 2 7 7 H 1.07998 * 119.99920 * 27.68655 * 6 5 4 8 8 C 1.38806 * 119.99745 * 207.68595 * 6 5 4 9 9 N 1.31621 * 120.00374 * 17.36778 * 8 6 5 10 10 Si 1.86806 * 119.99800 * 197.36948 * 8 6 5 11 11 H 1.48491 * 109.47144 * 59.99902 * 10 8 6 12 12 H 1.48503 * 109.47014 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46946 * 299.99731 * 10 8 6 14 14 C 1.46921 * 118.73966 * 53.60720 * 5 4 2 15 15 C 1.53166 * 108.76911 * 306.38771 * 14 5 4 16 16 C 1.53035 * 109.50187 * 120.06753 * 2 1 3 17 17 H 1.09000 * 109.46099 * 301.35473 * 16 2 1 18 18 N 1.46505 * 109.45872 * 61.32656 * 16 2 1 19 19 C 1.34779 * 119.99932 * 205.02893 * 18 16 2 20 20 O 1.21630 * 120.00139 * 0.02562 * 19 18 16 21 21 C 1.47265 * 119.99632 * 180.02562 * 19 18 16 22 22 C 1.35212 * 123.13936 * 179.97438 * 21 19 18 23 23 S 1.70945 * 108.82594 * 179.97438 * 22 21 19 24 24 C 1.70762 * 91.12948 * 0.02562 * 23 22 21 25 25 C 1.50703 * 124.72105 * 180.02562 * 24 23 22 26 26 C 1.53004 * 117.49586 * 8.72461 * 25 24 23 27 27 C 1.52998 * 117.49769 * 300.06726 * 25 24 23 28 28 N 1.28650 * 110.56170 * 359.97438 * 24 23 22 29 29 H 1.09006 * 109.46938 * 299.93222 * 1 2 3 30 30 H 1.09000 * 109.47492 * 59.93066 * 1 2 3 31 31 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.58481 * 305.18419 * 4 2 1 33 33 H 1.09001 * 109.58750 * 65.60236 * 4 2 1 34 34 H 0.96993 * 120.00205 * 180.02562 * 9 8 6 35 35 H 1.08992 * 109.58824 * 66.17837 * 14 5 4 36 36 H 1.08999 * 109.58265 * 186.60878 * 14 5 4 37 37 H 1.09006 * 109.50366 * 294.69076 * 15 14 5 38 38 H 1.08990 * 109.48302 * 174.59512 * 15 14 5 39 39 H 0.97003 * 119.99845 * 25.02947 * 18 16 2 40 40 H 1.07994 * 125.58430 * 0.02562 * 22 21 19 41 41 H 1.09002 * 115.55297 * 154.39298 * 25 24 23 42 42 H 1.09002 * 117.49952 * 0.02562 * 26 25 24 43 43 H 1.09003 * 117.49443 * 145.02135 * 26 25 24 44 44 H 1.09008 * 117.49434 * 214.98001 * 27 25 24 45 45 H 1.08996 * 117.50321 * 359.96897 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0420 -0.7236 -1.2495 5 7 3.5053 -0.8282 -1.1691 6 6 4.2943 -0.3780 -2.1939 7 1 3.9471 0.4215 -2.8315 8 6 5.5401 -0.9494 -2.4130 9 7 5.8295 -2.1199 -1.8852 10 14 6.8063 -0.0570 -3.4571 11 1 7.1179 1.2577 -2.8412 12 1 8.0452 -0.8719 -3.5368 13 1 6.2625 0.1527 -4.8229 14 6 4.1059 -1.4255 0.0314 15 6 3.5709 -0.6940 1.2662 16 6 2.0409 -0.7227 1.2484 17 1 1.6580 -0.2242 2.1389 18 7 1.5790 -2.1130 1.2309 19 6 1.4504 -2.7950 2.3862 20 8 1.7174 -2.2562 3.4435 21 6 0.9867 -4.1926 2.3684 22 6 0.8355 -4.9356 3.4880 23 16 0.2828 -6.4919 3.0468 24 6 0.2862 -6.0616 1.3942 25 6 -0.1133 -6.9792 0.2675 26 6 -0.7449 -8.3220 0.6402 27 6 0.6842 -8.2733 0.0939 28 7 0.6761 -4.8447 1.2450 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5149 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6064 -1.7216 -1.2980 33 1 1.7643 -0.1579 -2.1389 34 1 6.7002 -2.5190 -2.0381 35 1 3.8387 -2.4807 0.0873 36 1 5.1902 -1.3228 -0.0129 37 1 3.9154 0.3401 1.2543 38 1 3.9336 -1.1885 2.1672 39 1 1.3658 -2.5426 0.3877 40 1 1.0310 -4.6004 4.4958 41 1 -0.4750 -6.4860 -0.6348 42 1 -0.8719 -8.5415 1.7003 43 1 -1.5219 -8.7124 -0.0172 44 1 0.8468 -8.6317 -0.9227 45 1 1.4980 -8.4608 0.7942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000945640662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:48 Heat of formation + Delta-G solvation = 51.303052 kcal Electronic energy + Delta-G solvation = -27135.149570 eV Core-core repulsion = 23473.673374 eV Total energy + Delta-G solvation = -3661.476196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.52964 -39.19274 -37.69257 -37.05377 -34.21476 -32.44889 -31.11044 -30.64799 -29.90827 -26.40570 -25.75506 -25.17871 -23.71051 -22.78734 -21.91949 -21.11200 -20.90898 -19.82692 -18.68974 -18.35181 -16.84172 -16.41297 -16.32460 -15.49888 -15.08422 -14.87288 -14.71985 -14.26221 -14.01101 -13.91715 -13.58704 -13.56713 -13.21631 -12.84527 -12.59059 -12.49865 -12.13520 -12.05585 -11.82526 -11.44451 -11.32744 -11.15514 -11.04184 -10.90148 -10.77625 -10.65978 -10.34509 -10.17769 -10.01166 -9.96668 -9.78263 -9.69733 -9.68763 -9.38922 -8.94308 -8.51040 -8.41510 -6.64224 -5.75778 -3.18534 0.41741 1.06676 1.47890 1.97341 3.38590 3.39959 3.45868 3.46226 3.47156 3.66577 3.80042 4.42691 4.51286 4.58150 4.66664 4.94096 5.11565 5.20290 5.24726 5.29530 5.35689 5.41158 5.50362 5.54264 5.65060 5.67456 5.71946 5.83249 5.94875 6.03628 6.13779 6.21282 6.33503 6.41049 6.50203 6.67139 6.70573 6.81316 6.96393 7.02371 7.36983 7.41680 7.71539 7.81804 7.94475 8.47062 8.50555 9.23453 9.87084 10.43625 11.32178 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.003475 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.496745 B = 8055.473849 C = 9130.642319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 H 0.082 0.918 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.254 4.254 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.174 3.826 15 C -0.154 4.154 16 C 0.159 3.841 17 H 0.074 0.926 18 N -0.688 5.688 19 C 0.590 3.410 20 O -0.546 6.546 21 C 0.022 3.978 22 C -0.231 4.231 23 S 0.195 5.805 24 C 0.061 3.939 25 C -0.085 4.085 26 C -0.170 4.170 27 C -0.158 4.158 28 N -0.435 5.435 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.015 0.985 33 H 0.057 0.943 34 H 0.254 0.746 35 H 0.018 0.982 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.411 0.589 40 H 0.189 0.811 41 H 0.136 0.864 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.693 -11.179 8.225 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 H 0.101 0.899 4 C 0.024 3.976 5 N -0.313 5.313 6 C -0.384 4.384 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.049 3.951 15 C -0.194 4.194 16 C 0.054 3.946 17 H 0.092 0.908 18 N -0.339 5.339 19 C 0.373 3.627 20 O -0.424 6.424 21 C -0.113 4.113 22 C -0.373 4.373 23 S 0.453 5.547 24 C -0.219 4.219 25 C -0.106 4.106 26 C -0.208 4.208 27 C -0.197 4.197 28 N -0.150 5.150 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.248 0.752 40 H 0.206 0.794 41 H 0.154 0.846 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.534 -11.488 8.928 20.565 hybrid contribution 1.044 1.192 -0.880 1.812 sum -13.490 -10.296 8.048 18.782 Atomic orbital electron populations 1.21770 0.95765 1.01436 1.01031 1.21946 0.94586 1.00689 0.96699 0.89928 1.20913 0.86122 0.96240 0.94285 1.44051 0.99133 1.71540 1.16572 1.19134 0.98262 1.12357 1.08639 0.91716 1.25022 0.99870 0.95330 0.99268 1.70037 1.21876 1.14594 1.47990 0.86387 0.81119 0.79156 0.80201 1.21054 1.21688 1.20914 1.20714 0.99208 0.93012 0.82199 1.22571 0.94101 1.01970 1.00807 1.20970 0.95229 0.80280 0.98073 0.90803 1.45966 1.65075 1.13980 1.08878 1.17018 0.77804 0.83362 0.84532 1.90775 1.51956 1.68869 1.30803 1.20546 1.05963 0.97484 0.87305 1.26581 1.07226 0.98302 1.05206 1.82604 1.58656 1.11158 1.02312 1.26184 1.03556 0.94643 0.97494 1.20418 1.05929 0.87442 0.96840 1.23164 0.97195 0.98100 1.02370 1.23172 0.94707 0.98081 1.03724 1.66832 1.12362 1.06246 1.29555 0.93325 0.92706 0.93004 0.96686 0.92495 0.93637 0.96346 0.89606 0.91664 0.92728 0.75171 0.79386 0.84625 0.88421 0.87191 0.87235 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.06 37.16 0.34 -1.70 16 2 C -0.12 -2.06 2.67 -90.50 -0.24 -2.30 16 3 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.15 3.12 5.50 -3.71 -0.02 3.10 16 5 N -0.59 -14.75 2.99 -172.34 -0.52 -15.27 16 6 C -0.25 -6.98 9.59 -15.06 -0.14 -7.13 16 7 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 8 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 9 N -0.90 -26.43 11.19 55.49 0.62 -25.81 16 10 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.17 4.29 5.05 -3.73 -0.02 4.27 16 15 C -0.15 -3.21 5.77 -26.62 -0.15 -3.36 16 16 C 0.16 2.91 2.21 -67.89 -0.15 2.76 16 17 H 0.07 1.35 7.58 -51.93 -0.39 0.95 16 18 N -0.69 -12.47 3.59 -54.89 -0.20 -12.66 16 19 C 0.59 10.80 7.76 -12.59 -0.10 10.70 16 20 O -0.55 -11.03 16.37 5.25 0.09 -10.94 16 21 C 0.02 0.35 6.70 -84.53 -0.57 -0.22 16 22 C -0.23 -2.99 10.62 29.65 0.31 -2.68 16 23 S 0.20 1.89 21.65 -107.50 -2.33 -0.44 16 24 C 0.06 0.73 6.99 -13.61 -0.10 0.64 16 25 C -0.08 -0.80 6.33 -91.77 -0.58 -1.38 16 26 C -0.17 -1.09 10.01 -26.69 -0.27 -1.35 16 27 C -0.16 -1.21 10.24 -26.69 -0.27 -1.49 16 28 N -0.44 -6.68 10.12 -8.51 -0.09 -6.77 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 32 H 0.02 0.32 6.64 -51.93 -0.34 -0.03 16 33 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.02 0.49 7.74 -51.93 -0.40 0.08 16 36 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.41 7.56 6.25 -40.82 -0.26 7.30 16 40 H 0.19 2.20 8.03 -52.49 -0.42 1.78 16 41 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.10 0.56 7.21 -51.93 -0.37 0.18 16 43 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -32.04 374.66 -10.51 -42.55 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.66 Total: 6.99 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.04 Total: -0.11 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.18 Total: -60.51 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.33 Total: -0.44 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.04 -10.51 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945640662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.855 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds