Wall clock time and date at job start Tue Mar 31 2020 19:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70054 * 2 1 4 4 C 1.53189 * 109.58828 * 239.64473 * 2 1 3 5 5 C 1.53038 * 109.31101 * 185.57982 * 4 2 1 6 6 H 1.09005 * 109.45965 * 301.35043 * 5 4 2 7 7 N 1.46500 * 109.46012 * 181.38475 * 5 4 2 8 8 C 1.34782 * 120.00078 * 154.99443 * 7 5 4 9 9 O 1.21621 * 119.99880 * 0.02562 * 8 7 5 10 10 C 1.47257 * 119.99840 * 180.27398 * 8 7 5 11 11 N 1.29765 * 125.52239 * 359.42137 * 10 8 7 12 12 C 1.32600 * 116.74814 * 179.82557 * 11 10 8 13 13 C 1.34627 * 114.30945 * 0.43972 * 12 11 10 14 14 S 1.71619 * 109.60127 * 359.79168 * 13 12 11 15 15 C 1.51945 * 110.68158 * 179.81159 * 13 12 11 16 16 C 1.54228 * 104.85007 * 17.40298 * 15 13 12 17 17 C 1.52796 * 136.15346 * 180.02562 * 12 11 10 18 18 C 1.53042 * 109.54358 * 61.35970 * 5 4 2 19 19 C 1.53187 * 109.31226 * 298.63847 * 18 5 4 20 20 N 1.46926 * 108.78019 * 54.63120 * 19 18 5 21 21 C 1.36938 * 120.63538 * 126.36508 * 20 19 18 22 22 H 1.07989 * 120.00429 * 209.07035 * 21 20 19 23 23 C 1.38816 * 119.99337 * 29.07202 * 21 20 19 24 24 N 1.31615 * 120.00179 * 15.04075 * 23 21 20 25 25 Si 1.86799 * 119.99650 * 195.04469 * 23 21 20 26 26 H 1.48500 * 109.47220 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47096 * 119.99922 * 25 23 21 28 28 H 1.48496 * 109.47173 * 239.99947 * 25 23 21 29 29 H 1.09005 * 109.47187 * 180.35498 * 1 2 3 30 30 H 1.08996 * 109.47476 * 300.35385 * 1 2 3 31 31 H 1.08999 * 109.47342 * 60.35835 * 1 2 3 32 32 H 1.08994 * 109.49732 * 65.62554 * 4 2 1 33 33 H 1.09003 * 109.49390 * 305.52283 * 4 2 1 34 34 H 0.96994 * 120.00036 * 334.99845 * 7 5 4 35 35 H 1.09002 * 110.36027 * 136.24386 * 15 13 12 36 36 H 1.09001 * 110.36382 * 258.44614 * 15 13 12 37 37 H 1.08996 * 110.95521 * 91.61325 * 16 15 13 38 38 H 1.08998 * 110.95520 * 215.29846 * 16 15 13 39 39 H 1.09002 * 110.31556 * 43.88298 * 17 12 11 40 40 H 1.08996 * 110.40231 * 281.74603 * 17 12 11 41 41 H 1.09001 * 109.49109 * 58.58794 * 18 5 4 42 42 H 1.09000 * 109.49786 * 178.68365 * 18 5 4 43 43 H 1.09006 * 109.58817 * 294.84302 * 19 18 5 44 44 H 1.08996 * 109.70430 * 174.49201 * 19 18 5 45 45 H 0.97006 * 120.00071 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1700 6 1 4.0061 0.1474 -1.0990 7 7 4.0652 -1.5157 -2.3752 8 6 5.3295 -1.3020 -2.7906 9 8 6.0572 -0.5552 -2.1646 10 6 5.8279 -1.9686 -4.0054 11 7 5.1489 -2.7874 -4.7487 12 6 5.7702 -3.2863 -5.8085 13 6 7.0415 -2.8679 -5.9537 14 16 7.4418 -1.7899 -4.6797 15 6 7.6742 -3.4912 -7.1865 16 6 6.4853 -4.0025 -8.0253 17 6 5.4162 -4.2478 -6.9421 18 6 3.9569 -1.6656 0.0637 19 6 3.4650 -0.9468 1.3238 20 7 2.0225 -0.6994 1.1946 21 6 1.1535 -1.1134 2.1686 22 1 0.1362 -1.3686 1.9117 23 6 1.5805 -1.2049 3.4863 24 7 2.7029 -0.6255 3.8561 25 14 0.5621 -2.1504 4.7345 26 1 -0.6454 -2.7041 4.0707 27 1 1.3722 -3.2621 5.2942 28 1 0.1501 -1.2374 5.8308 29 1 -0.3634 -1.0277 0.0064 30 1 -0.3634 0.5193 0.8867 31 1 -0.3634 0.5082 -0.8932 32 1 1.7660 -0.1668 -2.1367 33 1 1.6030 -1.7253 -1.2912 34 1 3.4850 -2.1116 -2.8743 35 1 8.2372 -2.7424 -7.7436 36 1 8.3238 -4.3190 -6.9021 37 1 6.1547 -3.2446 -8.7355 38 1 6.7404 -4.9297 -8.5384 39 1 4.4235 -4.0234 -7.3325 40 1 5.4605 -5.2794 -6.5931 41 1 3.4984 -2.6527 0.0054 42 1 5.0412 -1.7694 0.1039 43 1 3.9903 0.0022 1.4318 44 1 3.6520 -1.5694 2.1987 45 1 3.0011 -0.6891 4.7770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947542550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:38 Heat of formation + Delta-G solvation = 29.349289 kcal Electronic energy + Delta-G solvation = -26341.726508 eV Core-core repulsion = 22679.298325 eV Total energy + Delta-G solvation = -3662.428182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.70556 -39.59231 -37.66280 -36.21842 -34.61513 -32.40748 -31.38398 -29.78187 -29.03088 -28.52879 -26.38508 -25.53810 -24.53352 -22.41882 -21.85060 -21.11034 -20.30403 -19.63478 -18.95306 -18.36822 -17.02127 -16.37725 -16.17773 -15.76757 -15.16313 -15.04595 -14.42826 -14.09206 -13.91605 -13.75558 -13.63358 -13.58388 -13.29729 -13.22663 -12.81365 -12.65400 -12.44186 -11.69477 -11.58994 -11.47950 -11.44061 -11.20752 -11.11408 -10.92039 -10.89981 -10.64620 -10.41792 -10.29209 -10.10245 -10.02314 -9.91554 -9.72981 -9.66977 -9.38386 -8.91029 -8.68590 -8.40699 -6.62547 -5.74887 -3.18738 0.08749 0.82281 1.52610 2.08938 3.10679 3.16882 3.38818 3.46758 3.48348 3.62899 4.03159 4.33348 4.49422 4.50999 4.75486 4.96410 5.10391 5.18329 5.27193 5.28420 5.38853 5.40432 5.44257 5.50366 5.58807 5.66037 5.78957 5.79829 5.99485 6.17371 6.23889 6.33551 6.40604 6.44111 6.52715 6.64877 6.80159 6.85578 7.03808 7.11897 7.21772 7.40437 7.62635 7.72916 7.85089 8.20257 8.49209 9.24706 9.88281 10.45078 11.33770 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023315 B = 0.002396 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.649222 B =11685.674985 C =11937.258919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.085 0.915 7 N -0.694 5.694 8 C 0.594 3.406 9 O -0.526 6.526 10 C 0.001 3.999 11 N -0.420 5.420 12 C 0.035 3.965 13 C -0.275 4.275 14 S 0.253 5.747 15 C -0.037 4.037 16 C -0.116 4.116 17 C -0.041 4.041 18 C -0.147 4.147 19 C 0.174 3.826 20 N -0.588 5.588 21 C -0.249 4.249 22 H 0.071 0.929 23 C 0.001 3.999 24 N -0.903 5.903 25 Si 0.900 3.100 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.406 0.594 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.021 0.979 44 H 0.092 0.908 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.158 -6.034 -24.363 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.046 0.954 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.344 5.344 8 C 0.375 3.625 9 O -0.402 6.402 10 C -0.276 4.276 11 N -0.138 5.138 12 C -0.102 4.102 13 C -0.397 4.397 14 S 0.511 5.489 15 C -0.077 4.077 16 C -0.155 4.155 17 C -0.080 4.080 18 C -0.188 4.188 19 C 0.048 3.952 20 N -0.311 5.311 21 C -0.379 4.379 22 H 0.089 0.911 23 C -0.197 4.197 24 N -0.547 5.547 25 Si 0.730 3.270 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.241 0.759 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.039 0.961 44 H 0.110 0.890 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.083 -4.963 -23.193 25.398 hybrid contribution -1.105 -1.423 -0.062 1.803 sum 7.978 -6.386 -23.255 25.402 Atomic orbital electron populations 1.21790 0.95698 1.01486 1.00314 1.20359 0.93117 0.93580 0.86528 0.95448 1.22398 0.93314 1.01888 0.99815 1.21205 0.94570 0.96817 0.82732 0.89665 1.46130 1.12029 1.47600 1.28679 1.16717 0.83017 0.81121 0.81689 1.90877 1.56392 1.37124 1.55828 1.27517 0.94992 1.03106 1.01955 1.65914 1.35856 1.08090 1.03893 1.21704 0.90869 1.01638 0.95947 1.26978 1.01663 1.05754 1.05353 1.83892 1.13100 1.37324 1.14568 1.20707 0.97725 0.99416 0.89823 1.22339 0.94094 1.02202 0.96911 1.20896 1.00239 0.96749 0.90135 1.22598 0.99855 0.99701 0.96626 1.20767 0.83206 0.97378 0.93834 1.44185 1.03012 1.64876 1.19047 1.19216 0.94829 1.37596 0.86223 0.91149 1.25100 0.97836 0.99799 0.96996 1.70022 1.23364 1.44579 1.16757 0.86255 0.79635 0.79535 0.81530 1.20298 1.21670 1.21788 0.92722 0.91853 0.94274 0.92523 0.91613 0.75933 0.90106 0.89401 0.90276 0.89391 0.89833 0.89455 0.92490 0.92774 0.96091 0.89021 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.94 37.16 0.30 -2.20 16 2 C 0.17 3.51 3.50 -67.60 -0.24 3.27 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -2.30 4.84 -26.61 -0.13 -2.43 16 5 C 0.15 2.69 2.41 -67.89 -0.16 2.52 16 6 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 7 N -0.69 -10.93 5.07 -54.89 -0.28 -11.21 16 8 C 0.59 9.80 7.77 -12.59 -0.10 9.71 16 9 O -0.53 -10.15 16.60 5.26 0.09 -10.06 16 10 C 0.00 0.02 7.44 -14.76 -0.11 -0.09 16 11 N -0.42 -5.67 10.23 -6.78 -0.07 -5.74 16 12 C 0.03 0.38 7.62 -82.49 -0.63 -0.25 16 13 C -0.27 -2.70 7.17 -34.97 -0.25 -2.95 16 14 S 0.25 2.89 23.03 -107.50 -2.48 0.41 16 15 C -0.04 -0.22 6.80 -26.63 -0.18 -0.40 16 16 C -0.12 -0.56 7.11 -25.48 -0.18 -0.74 16 17 C -0.04 -0.29 6.81 -26.23 -0.18 -0.47 16 18 C -0.15 -2.99 5.65 -26.61 -0.15 -3.14 16 19 C 0.17 4.23 5.29 -3.71 -0.02 4.21 16 20 N -0.59 -14.42 2.99 -164.78 -0.49 -14.91 16 21 C -0.25 -6.63 8.61 -15.06 -0.13 -6.76 16 22 H 0.07 1.83 6.20 -52.49 -0.33 1.50 16 23 C 0.00 0.03 4.96 -17.43 -0.09 -0.05 16 24 N -0.90 -26.23 11.14 55.49 0.62 -25.62 16 25 Si 0.90 21.65 29.58 -169.99 -5.03 16.62 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 H 0.05 1.01 7.40 -51.93 -0.38 0.63 16 30 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.41 5.69 8.26 -40.82 -0.34 5.36 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 2.49 6.06 -51.93 -0.31 2.17 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -31.44 371.18 -11.08 -42.51 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.78 Total: 2.15 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.25 Total: 0.24 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.22 Total: -57.47 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.48 Total: 0.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.44 -11.08 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947542550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.861 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds