Wall clock time and date at job start Tue Mar 31 2020 19:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70054 * 2 1 4 4 C 1.53189 * 109.58828 * 239.64473 * 2 1 3 5 5 C 1.53038 * 109.31101 * 185.57982 * 4 2 1 6 6 H 1.09005 * 109.45965 * 301.35043 * 5 4 2 7 7 N 1.46500 * 109.46012 * 181.38475 * 5 4 2 8 8 C 1.34782 * 120.00078 * 154.99443 * 7 5 4 9 9 O 1.21621 * 119.99880 * 0.02562 * 8 7 5 10 10 C 1.47257 * 119.99840 * 180.27398 * 8 7 5 11 11 N 1.29765 * 125.52239 * 359.42137 * 10 8 7 12 12 C 1.32600 * 116.74814 * 179.82557 * 11 10 8 13 13 C 1.34627 * 114.30945 * 0.43972 * 12 11 10 14 14 S 1.71619 * 109.60127 * 359.79168 * 13 12 11 15 15 C 1.51945 * 110.68158 * 179.81159 * 13 12 11 16 16 C 1.54228 * 104.85007 * 17.40298 * 15 13 12 17 17 C 1.52796 * 136.15346 * 180.02562 * 12 11 10 18 18 C 1.53042 * 109.54358 * 61.35970 * 5 4 2 19 19 C 1.53187 * 109.31226 * 298.63847 * 18 5 4 20 20 N 1.46926 * 108.78019 * 54.63120 * 19 18 5 21 21 C 1.36938 * 120.63538 * 126.36508 * 20 19 18 22 22 H 1.07989 * 120.00429 * 209.07035 * 21 20 19 23 23 C 1.38816 * 119.99337 * 29.07202 * 21 20 19 24 24 N 1.31615 * 120.00179 * 15.04075 * 23 21 20 25 25 Si 1.86799 * 119.99650 * 195.04469 * 23 21 20 26 26 H 1.48500 * 109.47220 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47096 * 119.99922 * 25 23 21 28 28 H 1.48496 * 109.47173 * 239.99947 * 25 23 21 29 29 H 1.09005 * 109.47187 * 180.35498 * 1 2 3 30 30 H 1.08996 * 109.47476 * 300.35385 * 1 2 3 31 31 H 1.08999 * 109.47342 * 60.35835 * 1 2 3 32 32 H 1.08994 * 109.49732 * 65.62554 * 4 2 1 33 33 H 1.09003 * 109.49390 * 305.52283 * 4 2 1 34 34 H 0.96994 * 120.00036 * 334.99845 * 7 5 4 35 35 H 1.09002 * 110.36027 * 136.24386 * 15 13 12 36 36 H 1.09001 * 110.36382 * 258.44614 * 15 13 12 37 37 H 1.08996 * 110.95521 * 91.61325 * 16 15 13 38 38 H 1.08998 * 110.95520 * 215.29846 * 16 15 13 39 39 H 1.09002 * 110.31556 * 43.88298 * 17 12 11 40 40 H 1.08996 * 110.40231 * 281.74603 * 17 12 11 41 41 H 1.09001 * 109.49109 * 58.58794 * 18 5 4 42 42 H 1.09000 * 109.49786 * 178.68365 * 18 5 4 43 43 H 1.09006 * 109.58817 * 294.84302 * 19 18 5 44 44 H 1.08996 * 109.70430 * 174.49201 * 19 18 5 45 45 H 0.97006 * 120.00071 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1700 6 1 4.0061 0.1474 -1.0990 7 7 4.0652 -1.5157 -2.3752 8 6 5.3295 -1.3020 -2.7906 9 8 6.0572 -0.5552 -2.1646 10 6 5.8279 -1.9686 -4.0054 11 7 5.1489 -2.7874 -4.7487 12 6 5.7702 -3.2863 -5.8085 13 6 7.0415 -2.8679 -5.9537 14 16 7.4418 -1.7899 -4.6797 15 6 7.6742 -3.4912 -7.1865 16 6 6.4853 -4.0025 -8.0253 17 6 5.4162 -4.2478 -6.9421 18 6 3.9569 -1.6656 0.0637 19 6 3.4650 -0.9468 1.3238 20 7 2.0225 -0.6994 1.1946 21 6 1.1535 -1.1134 2.1686 22 1 0.1362 -1.3686 1.9117 23 6 1.5805 -1.2049 3.4863 24 7 2.7029 -0.6255 3.8561 25 14 0.5621 -2.1504 4.7345 26 1 -0.6454 -2.7041 4.0707 27 1 1.3722 -3.2621 5.2942 28 1 0.1501 -1.2374 5.8308 29 1 -0.3634 -1.0277 0.0064 30 1 -0.3634 0.5193 0.8867 31 1 -0.3634 0.5082 -0.8932 32 1 1.7660 -0.1668 -2.1367 33 1 1.6030 -1.7253 -1.2912 34 1 3.4850 -2.1116 -2.8743 35 1 8.2372 -2.7424 -7.7436 36 1 8.3238 -4.3190 -6.9021 37 1 6.1547 -3.2446 -8.7355 38 1 6.7404 -4.9297 -8.5384 39 1 4.4235 -4.0234 -7.3325 40 1 5.4605 -5.2794 -6.5931 41 1 3.4984 -2.6527 0.0054 42 1 5.0412 -1.7694 0.1039 43 1 3.9903 0.0022 1.4318 44 1 3.6520 -1.5694 2.1987 45 1 3.0011 -0.6891 4.7770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947542550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:37 Heat of formation + Delta-G solvation = 9.440775 kcal Electronic energy + Delta-G solvation = -26342.589806 eV Core-core repulsion = 22679.298325 eV Total energy + Delta-G solvation = -3663.291480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62962 -40.83805 -39.28416 -36.93804 -36.20246 -34.24282 -33.02784 -31.46580 -29.71813 -29.42105 -27.96708 -26.85747 -26.04705 -23.86500 -23.08119 -22.16949 -21.62302 -21.09088 -20.23246 -19.21303 -18.38400 -17.93463 -17.23754 -16.97828 -16.85814 -16.22850 -15.79717 -15.61563 -15.25853 -15.07111 -14.89221 -14.78362 -14.56818 -14.31079 -14.19682 -13.75306 -13.34828 -12.99919 -12.98461 -12.75017 -12.70844 -12.63041 -12.38217 -12.26820 -12.11569 -12.07491 -11.94060 -11.86889 -11.74495 -11.62626 -11.54313 -11.22513 -10.87164 -10.57069 -10.51959 -10.19357 -9.63092 -8.65203 -7.83301 -5.29610 -0.85813 -0.07960 0.66190 1.12964 1.46782 1.48891 1.58797 1.96150 2.01511 2.52904 2.67116 3.33005 3.47056 3.52713 3.61261 3.81901 4.00743 4.01965 4.15300 4.23384 4.36202 4.39758 4.51948 4.59114 4.67981 4.73478 4.73997 4.77347 4.83394 4.88747 4.93544 5.03242 5.04685 5.10501 5.13786 5.18496 5.31059 5.35926 5.39188 5.51073 5.55420 5.71125 5.73875 6.19474 6.43555 6.46729 6.94898 7.17439 7.88902 8.41760 9.24359 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023315 B = 0.002396 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.649222 B =11685.674985 C =11937.258919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.161 3.839 3 H 0.016 0.984 4 C -0.119 4.119 5 C 0.161 3.839 6 H 0.066 0.934 7 N -0.686 5.686 8 C 0.595 3.405 9 O -0.564 6.564 10 C -0.041 4.041 11 N -0.427 5.427 12 C 0.006 3.994 13 C -0.256 4.256 14 S 0.264 5.736 15 C -0.040 4.040 16 C -0.106 4.106 17 C -0.041 4.041 18 C -0.131 4.131 19 C 0.184 3.816 20 N -0.603 5.603 21 C -0.246 4.246 22 H 0.081 0.919 23 C -0.058 4.058 24 N -0.941 5.941 25 Si 0.964 3.036 26 H -0.262 1.262 27 H -0.295 1.295 28 H -0.295 1.295 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.416 0.584 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.047 0.953 43 H -0.009 1.009 44 H 0.058 0.942 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.588 -7.781 -28.158 30.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.033 0.967 4 C -0.158 4.158 5 C 0.057 3.943 6 H 0.085 0.915 7 N -0.336 5.336 8 C 0.378 3.622 9 O -0.442 6.442 10 C -0.316 4.316 11 N -0.145 5.145 12 C -0.130 4.130 13 C -0.379 4.379 14 S 0.521 5.479 15 C -0.080 4.080 16 C -0.145 4.145 17 C -0.081 4.081 18 C -0.172 4.172 19 C 0.057 3.943 20 N -0.327 5.327 21 C -0.376 4.376 22 H 0.098 0.902 23 C -0.253 4.253 24 N -0.588 5.588 25 Si 0.793 3.207 26 H -0.186 1.186 27 H -0.222 1.222 28 H -0.223 1.223 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.254 0.746 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.009 0.991 44 H 0.076 0.924 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.470 -6.723 -27.031 29.114 hybrid contribution -0.837 -0.879 0.964 1.550 sum 7.633 -7.602 -26.067 28.205 Atomic orbital electron populations 1.21708 0.93753 1.01709 1.01241 1.20631 0.94794 0.92977 0.86165 0.96665 1.22209 0.92053 1.02358 0.99190 1.20862 0.95362 0.95483 0.82633 0.91542 1.45857 1.12256 1.47610 1.27860 1.16999 0.82614 0.80481 0.82123 1.90848 1.57269 1.38825 1.57290 1.26952 0.96781 1.05433 1.02407 1.65882 1.36557 1.07637 1.04421 1.22435 0.91540 1.02721 0.96285 1.27631 1.01547 1.03517 1.05208 1.83825 1.11441 1.37601 1.15029 1.21010 0.98567 1.00175 0.88214 1.22394 0.92285 1.03746 0.96053 1.21106 1.01392 0.96183 0.89376 1.22336 0.99213 0.99565 0.96052 1.20458 0.83661 0.95637 0.94542 1.44439 1.02658 1.65580 1.20028 1.19588 0.95308 1.36116 0.86617 0.90176 1.25872 0.99115 1.01271 0.99012 1.70195 1.25316 1.46619 1.16649 0.85248 0.78577 0.77838 0.79076 1.18600 1.22241 1.22274 0.92697 0.93921 0.90433 0.89262 0.90754 0.74641 0.88379 0.87610 0.89619 0.86581 0.89482 0.88554 0.92174 0.93466 0.99056 0.92357 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.94 71.98 0.57 -3.87 16 2 C 0.16 6.48 3.50 44.97 0.16 6.64 16 3 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 4 C -0.12 -3.87 4.84 30.67 0.15 -3.72 16 5 C 0.16 5.80 2.41 45.02 0.11 5.91 16 6 H 0.07 2.68 7.58 -2.38 -0.02 2.66 16 7 N -0.69 -21.39 5.07 -445.82 -2.26 -23.66 16 8 C 0.59 19.98 7.77 86.61 0.67 20.65 16 9 O -0.56 -22.57 16.60 -4.10 -0.07 -22.64 16 10 C -0.04 -1.16 7.44 87.37 0.65 -0.51 16 11 N -0.43 -11.09 10.23 -175.37 -1.79 -12.88 16 12 C 0.01 0.12 7.62 42.29 0.32 0.45 16 13 C -0.26 -4.41 7.17 25.26 0.18 -4.23 16 14 S 0.26 5.82 23.03 -56.49 -1.30 4.52 16 15 C -0.04 -0.32 6.80 30.66 0.21 -0.11 16 16 C -0.11 -0.55 7.11 31.40 0.22 -0.32 16 17 C -0.04 -0.46 6.81 30.92 0.21 -0.25 16 18 C -0.13 -5.49 5.65 30.67 0.17 -5.32 16 19 C 0.18 9.38 5.29 86.36 0.46 9.84 16 20 N -0.60 -30.20 2.99 -675.24 -2.02 -32.22 16 21 C -0.25 -13.25 8.61 84.03 0.72 -12.53 16 22 H 0.08 4.10 6.20 -2.92 -0.02 4.08 16 23 C -0.06 -3.28 4.96 84.86 0.42 -2.86 16 24 N -0.94 -57.14 11.14 21.65 0.24 -56.90 16 25 Si 0.96 45.37 29.58 68.60 2.03 47.40 16 26 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 29 H 0.05 1.91 7.40 -2.38 -0.02 1.89 16 30 H 0.04 1.65 7.66 -2.39 -0.02 1.63 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.42 11.22 8.26 -92.71 -0.77 10.46 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 43 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 44 H 0.06 3.36 6.06 -2.39 -0.01 3.34 16 45 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 Total: -1.00 -71.89 371.18 0.30 -71.59 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.25 Total: 15.02 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 5.23 Total: 9.77 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -5.83 Total: -125.66 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.07 Total: -22.64 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.30 Total: 4.52 kcal Total: -71.89 0.30 -71.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947542550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.031 kcal (2) G-P(sol) polarization free energy of solvation -71.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds