Wall clock time and date at job start Tue Mar 31 2020 19:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.69974 * 2 1 4 4 C 1.53187 * 109.58797 * 239.64282 * 2 1 3 5 5 C 1.53046 * 109.31183 * 294.85122 * 4 2 1 6 6 H 1.08998 * 109.46221 * 58.65177 * 5 4 2 7 7 N 1.46504 * 109.45682 * 178.62607 * 5 4 2 8 8 C 1.34770 * 119.99766 * 204.99749 * 7 5 4 9 9 O 1.21619 * 120.00242 * 0.02562 * 8 7 5 10 10 C 1.47256 * 119.99940 * 180.02562 * 8 7 5 11 11 N 1.29769 * 125.52505 * 179.97438 * 10 8 7 12 12 C 1.32599 * 116.75454 * 179.97438 * 11 10 8 13 13 C 1.34624 * 114.30769 * 0.04509 * 12 11 10 14 14 S 1.71626 * 109.59974 * 359.66612 * 13 12 11 15 15 C 1.51941 * 110.68635 * 179.97438 * 13 12 11 16 16 C 1.54235 * 104.84923 * 342.61591 * 15 13 12 17 17 C 1.52794 * 136.15622 * 180.08538 * 12 11 10 18 18 C 1.53044 * 109.53404 * 298.63052 * 5 4 2 19 19 C 1.52755 * 109.38132 * 61.24392 * 18 5 4 20 20 N 1.46923 * 109.00900 * 305.58408 * 19 18 5 21 21 C 1.36943 * 120.62930 * 233.58508 * 20 19 18 22 22 H 1.08004 * 119.99729 * 152.16663 * 21 20 19 23 23 C 1.38806 * 119.99865 * 332.16538 * 21 20 19 24 24 N 1.31614 * 120.00503 * 342.77410 * 23 21 20 25 25 Si 1.86807 * 119.99640 * 162.77186 * 23 21 20 26 26 H 1.48505 * 109.47082 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.47280 * 300.00267 * 25 23 21 28 28 H 1.48498 * 109.46916 * 60.00563 * 25 23 21 29 29 H 1.09001 * 109.47174 * 299.64511 * 1 2 3 30 30 H 1.08996 * 109.47254 * 59.64532 * 1 2 3 31 31 H 1.08997 * 109.47071 * 179.64932 * 1 2 3 32 32 H 1.09004 * 109.49624 * 54.79810 * 4 2 1 33 33 H 1.08999 * 109.49918 * 174.89811 * 4 2 1 34 34 H 0.97004 * 120.00075 * 25.00085 * 7 5 4 35 35 H 1.09003 * 110.36831 * 223.77361 * 15 13 12 36 36 H 1.08998 * 110.36389 * 101.45259 * 15 13 12 37 37 H 1.08997 * 110.95119 * 268.38734 * 16 15 13 38 38 H 1.08999 * 110.98697 * 144.67589 * 16 15 13 39 39 H 1.09003 * 110.31572 * 316.45412 * 17 12 11 40 40 H 1.08995 * 110.31455 * 78.54278 * 17 12 11 41 41 H 1.09007 * 109.49256 * 181.31765 * 18 5 4 42 42 H 1.09002 * 109.49531 * 301.41463 * 18 5 4 43 43 H 1.09005 * 109.50719 * 185.70148 * 19 18 5 44 44 H 1.09006 * 109.43430 * 65.42411 * 19 18 5 45 45 H 0.97004 * 120.00231 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 1.6414 -2.2041 -1.1700 6 1 0.5565 -2.2815 -1.0992 7 7 2.1026 -2.8979 -2.3752 8 6 1.4754 -4.0161 -2.7906 9 8 0.5263 -4.4490 -2.1654 10 6 1.9393 -4.7137 -4.0016 11 7 1.4175 -5.7942 -4.4959 12 6 1.9754 -6.2763 -5.5980 13 6 3.0218 -5.5592 -6.0488 14 16 3.2847 -4.2134 -5.0168 15 6 3.5966 -6.1828 -7.3095 16 6 3.0430 -7.6223 -7.3263 17 6 1.7370 -7.4690 -6.5228 18 6 2.2800 -2.8464 0.0636 19 6 1.7740 -2.1421 1.3211 20 7 2.0226 -0.6995 1.1945 21 6 2.7052 -0.0210 2.1686 22 1 3.2690 0.8648 1.9156 23 6 2.6726 -0.4717 3.4811 24 7 1.7431 -1.3221 3.8620 25 14 3.9481 0.1287 4.7067 26 1 3.6958 -0.4964 6.0300 27 1 5.3047 -0.2452 4.2326 28 1 3.8571 1.6056 4.8322 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5193 -0.8867 31 1 -0.3633 -1.0276 -0.0063 32 1 1.6075 -0.2785 -2.1368 33 1 3.1297 -0.6504 -1.2912 34 1 2.8594 -2.5524 -2.8741 35 1 4.6855 -6.1957 -7.2639 36 1 3.2594 -5.6366 -8.1905 37 1 3.7276 -8.3089 -6.8283 38 1 2.8381 -7.9499 -8.3454 39 1 1.5434 -8.3684 -5.9383 40 1 0.9016 -7.2670 -7.1932 41 1 2.0122 -3.9023 0.1038 42 1 3.3640 -2.7474 0.0053 43 1 2.3025 -2.5288 2.1925 44 1 0.7043 -2.3203 1.4311 45 1 1.7205 -1.6373 4.7791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947542551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:41 Heat of formation + Delta-G solvation = 32.060105 kcal Electronic energy + Delta-G solvation = -26421.980520 eV Core-core repulsion = 22759.669887 eV Total energy + Delta-G solvation = -3662.310633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.73684 -39.68230 -37.79390 -36.14503 -34.59002 -32.58216 -30.98846 -29.84994 -29.07076 -28.61724 -26.98906 -25.47831 -24.14434 -22.42794 -21.94754 -21.63112 -20.60604 -19.42571 -18.63755 -18.23730 -17.23120 -16.53970 -16.34403 -15.90983 -15.11310 -14.81682 -14.48094 -14.24410 -13.93264 -13.75903 -13.71230 -13.57358 -13.30304 -13.11453 -12.66722 -12.55380 -12.46320 -12.22309 -11.71470 -11.58191 -11.47337 -11.42089 -11.08370 -10.95486 -10.81523 -10.64374 -10.40809 -10.36879 -10.21242 -10.01066 -9.73847 -9.73347 -9.69800 -9.39367 -8.95967 -8.76106 -8.41565 -6.69410 -5.78001 -3.20641 0.05364 0.79260 1.37244 2.10360 2.74662 3.16257 3.38811 3.45235 3.45661 3.74935 4.00214 4.38095 4.48464 4.48976 4.68687 4.93878 5.07687 5.16703 5.24722 5.26938 5.36245 5.38813 5.40001 5.48104 5.55584 5.65295 5.74110 5.76414 5.98405 6.04345 6.19671 6.26597 6.37544 6.43202 6.57157 6.62284 6.78059 6.80595 6.93140 7.15300 7.23705 7.38241 7.55321 7.69978 7.80152 8.13637 8.45734 9.21490 9.84966 10.41372 11.30342 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024991 B = 0.002411 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.143620 B =11610.060709 C =11736.394233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.171 3.829 3 H 0.067 0.933 4 C -0.134 4.134 5 C 0.151 3.849 6 H 0.091 0.909 7 N -0.712 5.712 8 C 0.591 3.409 9 O -0.496 6.496 10 C 0.017 3.983 11 N -0.395 5.395 12 C 0.035 3.965 13 C -0.257 4.257 14 S 0.184 5.816 15 C -0.038 4.038 16 C -0.116 4.116 17 C -0.041 4.041 18 C -0.149 4.149 19 C 0.173 3.827 20 N -0.585 5.585 21 C -0.254 4.254 22 H 0.065 0.935 23 C 0.004 3.996 24 N -0.900 5.900 25 Si 0.902 3.098 26 H -0.291 1.291 27 H -0.284 1.284 28 H -0.283 1.283 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.022 0.978 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -8.161 -24.479 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 H 0.085 0.915 4 C -0.174 4.174 5 C 0.049 3.951 6 H 0.109 0.891 7 N -0.364 5.364 8 C 0.371 3.629 9 O -0.369 6.369 10 C -0.262 4.262 11 N -0.110 5.110 12 C -0.101 4.101 13 C -0.379 4.379 14 S 0.441 5.559 15 C -0.077 4.077 16 C -0.155 4.155 17 C -0.081 4.081 18 C -0.189 4.189 19 C 0.047 3.953 20 N -0.306 5.306 21 C -0.384 4.384 22 H 0.083 0.917 23 C -0.195 4.195 24 N -0.543 5.543 25 Si 0.731 3.269 26 H -0.217 1.217 27 H -0.211 1.211 28 H -0.209 1.209 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.227 0.773 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.041 0.959 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.267 -7.868 -23.435 25.086 hybrid contribution 0.673 -0.367 0.046 0.768 sum 4.940 -8.236 -23.389 25.284 Atomic orbital electron populations 1.22315 0.98620 1.01181 1.00179 1.20433 0.91847 0.95125 0.86346 0.91475 1.22338 1.01369 0.93735 0.99911 1.21260 1.00173 0.91388 0.82306 0.89119 1.46177 1.34358 1.26229 1.29636 1.16691 0.83349 0.80918 0.81920 1.90876 1.26636 1.64746 1.54641 1.27368 0.98792 0.97761 1.02251 1.65703 1.27576 1.08660 1.09068 1.21832 0.94284 1.00735 0.93206 1.26771 1.04464 1.01336 1.05365 1.83604 1.31612 1.22865 1.17814 1.20734 1.00635 0.94860 0.91521 1.22339 0.96251 0.95860 1.01082 1.20907 0.98708 0.93750 0.94728 1.22543 1.00344 0.99366 0.96671 1.20665 0.97927 0.82893 0.93799 1.44151 1.63847 1.03340 1.19271 1.19108 1.22255 1.10235 0.86776 0.91680 1.25044 0.97693 0.99963 0.96794 1.70022 1.31808 1.35450 1.17059 0.86389 0.81647 0.78319 0.80496 1.21688 1.21082 1.20918 0.92517 0.94434 0.93158 0.92356 0.91665 0.77315 0.89971 0.89321 0.90190 0.89284 0.89678 0.89365 0.92671 0.92458 0.89161 0.95949 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.03 37.16 0.34 -2.75 16 2 C 0.17 3.37 3.29 -67.60 -0.22 3.14 16 3 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 4 C -0.13 -2.15 5.02 -26.61 -0.13 -2.29 16 5 C 0.15 2.60 2.21 -67.88 -0.15 2.45 16 6 H 0.09 1.74 5.92 -51.93 -0.31 1.43 16 7 N -0.71 -10.38 5.07 -54.89 -0.28 -10.66 16 8 C 0.59 9.81 7.77 -12.60 -0.10 9.72 16 9 O -0.50 -10.28 16.73 5.26 0.09 -10.19 16 10 C 0.02 0.24 7.44 -14.76 -0.11 0.13 16 11 N -0.40 -6.08 10.58 -6.78 -0.07 -6.15 16 12 C 0.04 0.41 7.62 -82.49 -0.63 -0.21 16 13 C -0.26 -2.50 7.17 -34.97 -0.25 -2.75 16 14 S 0.18 1.84 22.30 -107.50 -2.40 -0.55 16 15 C -0.04 -0.22 6.80 -26.62 -0.18 -0.40 16 16 C -0.12 -0.57 7.11 -25.51 -0.18 -0.75 16 17 C -0.04 -0.32 6.80 -26.26 -0.18 -0.49 16 18 C -0.15 -2.94 5.63 -26.83 -0.15 -3.09 16 19 C 0.17 4.13 4.87 -3.94 -0.02 4.11 16 20 N -0.58 -14.03 2.71 -165.04 -0.45 -14.48 16 21 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 22 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 23 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 24 N -0.90 -25.91 11.19 55.49 0.62 -25.29 16 25 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.99 5.74 -51.93 -0.30 0.69 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.39 4.54 7.74 -40.82 -0.32 4.23 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 44 H 0.02 0.57 7.52 -51.93 -0.39 0.18 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -32.79 369.55 -10.80 -43.59 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.66 Total: 1.81 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.20 Total: -0.07 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.18 Total: -56.57 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.40 Total: -0.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.79 -10.80 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947542551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.651 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds