Wall clock time and date at job start Tue Mar 31 2020 19:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.69974 * 2 1 4 4 C 1.53187 * 109.58797 * 239.64282 * 2 1 3 5 5 C 1.53046 * 109.31183 * 294.85122 * 4 2 1 6 6 H 1.08998 * 109.46221 * 58.65177 * 5 4 2 7 7 N 1.46504 * 109.45682 * 178.62607 * 5 4 2 8 8 C 1.34770 * 119.99766 * 204.99749 * 7 5 4 9 9 O 1.21619 * 120.00242 * 0.02562 * 8 7 5 10 10 C 1.47256 * 119.99940 * 180.02562 * 8 7 5 11 11 N 1.29769 * 125.52505 * 179.97438 * 10 8 7 12 12 C 1.32599 * 116.75454 * 179.97438 * 11 10 8 13 13 C 1.34624 * 114.30769 * 0.04509 * 12 11 10 14 14 S 1.71626 * 109.59974 * 359.66612 * 13 12 11 15 15 C 1.51941 * 110.68635 * 179.97438 * 13 12 11 16 16 C 1.54235 * 104.84923 * 342.61591 * 15 13 12 17 17 C 1.52794 * 136.15622 * 180.08538 * 12 11 10 18 18 C 1.53044 * 109.53404 * 298.63052 * 5 4 2 19 19 C 1.52755 * 109.38132 * 61.24392 * 18 5 4 20 20 N 1.46923 * 109.00900 * 305.58408 * 19 18 5 21 21 C 1.36943 * 120.62930 * 233.58508 * 20 19 18 22 22 H 1.08004 * 119.99729 * 152.16663 * 21 20 19 23 23 C 1.38806 * 119.99865 * 332.16538 * 21 20 19 24 24 N 1.31614 * 120.00503 * 342.77410 * 23 21 20 25 25 Si 1.86807 * 119.99640 * 162.77186 * 23 21 20 26 26 H 1.48505 * 109.47082 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.47280 * 300.00267 * 25 23 21 28 28 H 1.48498 * 109.46916 * 60.00563 * 25 23 21 29 29 H 1.09001 * 109.47174 * 299.64511 * 1 2 3 30 30 H 1.08996 * 109.47254 * 59.64532 * 1 2 3 31 31 H 1.08997 * 109.47071 * 179.64932 * 1 2 3 32 32 H 1.09004 * 109.49624 * 54.79810 * 4 2 1 33 33 H 1.08999 * 109.49918 * 174.89811 * 4 2 1 34 34 H 0.97004 * 120.00075 * 25.00085 * 7 5 4 35 35 H 1.09003 * 110.36831 * 223.77361 * 15 13 12 36 36 H 1.08998 * 110.36389 * 101.45259 * 15 13 12 37 37 H 1.08997 * 110.95119 * 268.38734 * 16 15 13 38 38 H 1.08999 * 110.98697 * 144.67589 * 16 15 13 39 39 H 1.09003 * 110.31572 * 316.45412 * 17 12 11 40 40 H 1.08995 * 110.31455 * 78.54278 * 17 12 11 41 41 H 1.09007 * 109.49256 * 181.31765 * 18 5 4 42 42 H 1.09002 * 109.49531 * 301.41463 * 18 5 4 43 43 H 1.09005 * 109.50719 * 185.70148 * 19 18 5 44 44 H 1.09006 * 109.43430 * 65.42411 * 19 18 5 45 45 H 0.97004 * 120.00231 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 1.6414 -2.2041 -1.1700 6 1 0.5565 -2.2815 -1.0992 7 7 2.1026 -2.8979 -2.3752 8 6 1.4754 -4.0161 -2.7906 9 8 0.5263 -4.4490 -2.1654 10 6 1.9393 -4.7137 -4.0016 11 7 1.4175 -5.7942 -4.4959 12 6 1.9754 -6.2763 -5.5980 13 6 3.0218 -5.5592 -6.0488 14 16 3.2847 -4.2134 -5.0168 15 6 3.5966 -6.1828 -7.3095 16 6 3.0430 -7.6223 -7.3263 17 6 1.7370 -7.4690 -6.5228 18 6 2.2800 -2.8464 0.0636 19 6 1.7740 -2.1421 1.3211 20 7 2.0226 -0.6995 1.1945 21 6 2.7052 -0.0210 2.1686 22 1 3.2690 0.8648 1.9156 23 6 2.6726 -0.4717 3.4811 24 7 1.7431 -1.3221 3.8620 25 14 3.9481 0.1287 4.7067 26 1 3.6958 -0.4964 6.0300 27 1 5.3047 -0.2452 4.2326 28 1 3.8571 1.6056 4.8322 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5193 -0.8867 31 1 -0.3633 -1.0276 -0.0063 32 1 1.6075 -0.2785 -2.1368 33 1 3.1297 -0.6504 -1.2912 34 1 2.8594 -2.5524 -2.8741 35 1 4.6855 -6.1957 -7.2639 36 1 3.2594 -5.6366 -8.1905 37 1 3.7276 -8.3089 -6.8283 38 1 2.8381 -7.9499 -8.3454 39 1 1.5434 -8.3684 -5.9383 40 1 0.9016 -7.2670 -7.1932 41 1 2.0122 -3.9023 0.1038 42 1 3.3640 -2.7474 0.0053 43 1 2.3025 -2.5288 2.1925 44 1 0.7043 -2.3203 1.4311 45 1 1.7205 -1.6373 4.7791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947542551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:40 Heat of formation + Delta-G solvation = 10.341540 kcal Electronic energy + Delta-G solvation = -26422.922308 eV Core-core repulsion = 22759.669887 eV Total energy + Delta-G solvation = -3663.252420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66639 -40.91639 -39.33905 -36.88885 -36.14648 -34.37903 -32.62469 -31.56675 -29.78028 -29.48405 -28.51349 -26.62487 -25.85023 -23.79187 -23.45454 -22.59651 -21.74643 -20.55140 -19.82202 -19.41657 -18.74070 -17.94777 -17.35617 -17.03132 -16.63502 -16.24131 -15.80254 -15.52326 -15.38936 -15.12971 -14.74835 -14.73515 -14.36070 -14.24230 -14.15252 -13.89729 -13.77045 -13.16346 -13.05035 -12.93249 -12.62987 -12.56461 -12.37109 -12.31746 -12.14384 -12.07710 -12.04869 -11.93352 -11.81861 -11.56100 -11.53104 -11.06989 -10.70686 -10.55557 -10.52734 -10.22654 -9.64422 -8.68165 -7.84235 -5.29075 -0.86540 -0.05921 0.51705 1.12899 1.48677 1.50983 1.57529 1.61651 2.02099 2.53367 2.92937 3.31595 3.44268 3.52410 3.63812 3.81166 3.96150 4.03382 4.13376 4.25634 4.37399 4.42855 4.50676 4.51217 4.69619 4.71158 4.72172 4.79729 4.82849 4.85086 4.86447 5.05998 5.08239 5.08698 5.15658 5.16984 5.29016 5.32344 5.37198 5.43811 5.54943 5.69880 5.75733 6.17254 6.42123 6.55662 6.93092 7.16944 7.88982 8.41258 9.22552 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024991 B = 0.002411 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.143620 B =11610.060709 C =11736.394233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.161 3.839 3 H 0.075 0.925 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.069 0.931 7 N -0.695 5.695 8 C 0.592 3.408 9 O -0.552 6.552 10 C -0.037 4.037 11 N -0.436 5.436 12 C 0.000 4.000 13 C -0.245 4.245 14 S 0.262 5.738 15 C -0.039 4.039 16 C -0.106 4.106 17 C -0.045 4.045 18 C -0.135 4.135 19 C 0.185 3.815 20 N -0.599 5.599 21 C -0.256 4.256 22 H 0.074 0.926 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.966 3.034 26 H -0.301 1.301 27 H -0.277 1.277 28 H -0.274 1.274 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.412 0.588 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.055 0.945 44 H -0.009 1.009 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.449 -7.371 -28.645 30.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.094 0.906 4 C -0.159 4.159 5 C 0.058 3.942 6 H 0.088 0.912 7 N -0.347 5.347 8 C 0.375 3.625 9 O -0.429 6.429 10 C -0.312 4.312 11 N -0.153 5.153 12 C -0.136 4.136 13 C -0.368 4.368 14 S 0.519 5.481 15 C -0.078 4.078 16 C -0.145 4.145 17 C -0.084 4.084 18 C -0.175 4.175 19 C 0.058 3.942 20 N -0.321 5.321 21 C -0.386 4.386 22 H 0.092 0.908 23 C -0.249 4.249 24 N -0.583 5.583 25 Si 0.794 3.206 26 H -0.227 1.227 27 H -0.203 1.203 28 H -0.199 1.199 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.249 0.751 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.137 0.863 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.009 0.991 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.999 -7.030 -27.649 29.374 hybrid contribution -0.138 -0.633 1.184 1.349 sum 6.861 -7.662 -26.465 28.393 Atomic orbital electron populations 1.22211 0.98259 1.00300 1.00694 1.20711 0.92155 0.95667 0.86030 0.90645 1.22189 1.02367 0.91994 0.99320 1.20913 0.98760 0.92370 0.82142 0.91247 1.45804 1.34642 1.25620 1.28673 1.17058 0.82474 0.80716 0.82290 1.90834 1.29118 1.66229 1.56760 1.26762 1.02180 0.99027 1.03211 1.65655 1.29323 1.09540 1.10753 1.22468 0.95287 1.02694 0.93131 1.27564 1.03117 1.00252 1.05874 1.83183 1.27760 1.21662 1.15504 1.21026 1.01744 0.95074 0.89969 1.22389 0.94408 0.95464 1.02200 1.21125 1.00852 0.92060 0.94396 1.22297 1.00672 0.98311 0.96244 1.20316 0.95584 0.83797 0.94470 1.44359 1.64190 1.03386 1.20163 1.19508 1.21787 1.10027 0.87316 0.90795 1.25815 0.99544 1.00781 0.98742 1.70202 1.33833 1.37410 1.16881 0.85367 0.79441 0.78015 0.77768 1.22714 1.20320 1.19946 0.95182 0.90564 0.94811 0.88578 0.90202 0.75121 0.87946 0.87091 0.89812 0.86340 0.90277 0.88514 0.93916 0.91625 0.92708 0.99110 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 9.03 71.98 0.65 -5.20 16 2 C 0.16 6.18 3.29 44.97 0.15 6.32 16 3 H 0.08 2.78 7.93 -2.39 -0.02 2.76 16 4 C -0.12 -3.54 5.02 30.67 0.15 -3.39 16 5 C 0.16 5.52 2.21 45.02 0.10 5.62 16 6 H 0.07 2.73 5.92 -2.39 -0.01 2.72 16 7 N -0.70 -19.62 5.07 -445.83 -2.26 -21.88 16 8 C 0.59 20.09 7.77 86.61 0.67 20.76 16 9 O -0.55 -24.28 16.73 -4.09 -0.07 -24.35 16 10 C -0.04 -1.05 7.44 87.37 0.65 -0.40 16 11 N -0.44 -13.64 10.58 -175.38 -1.86 -15.49 16 12 C 0.00 0.00 7.62 42.29 0.32 0.32 16 13 C -0.24 -4.04 7.17 25.25 0.18 -3.85 16 14 S 0.26 4.53 22.30 -56.49 -1.26 3.27 16 15 C -0.04 -0.28 6.80 30.66 0.21 -0.07 16 16 C -0.11 -0.62 7.11 31.39 0.22 -0.40 16 17 C -0.04 -0.60 6.80 30.90 0.21 -0.39 16 18 C -0.13 -5.49 5.63 30.53 0.17 -5.32 16 19 C 0.19 9.28 4.87 86.22 0.42 9.70 16 20 N -0.60 -29.18 2.71 -676.05 -1.83 -31.01 16 21 C -0.26 -13.71 9.58 84.03 0.81 -12.91 16 22 H 0.07 3.77 7.89 -2.91 -0.02 3.74 16 23 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16 24 N -0.94 -56.53 11.19 21.65 0.24 -56.29 16 25 Si 0.97 44.85 29.59 68.60 2.03 46.88 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 28 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.03 1.36 5.74 -2.39 -0.01 1.35 16 32 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.41 8.46 7.74 -92.70 -0.72 7.74 16 35 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.05 3.12 6.04 -2.38 -0.01 3.11 16 44 H -0.01 -0.51 7.52 -2.38 -0.02 -0.53 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -77.73 369.55 0.63 -77.10 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.30 Total: 13.56 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.33 Total: 8.21 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -5.70 Total: -124.68 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.07 Total: -24.35 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.26 Total: 3.27 kcal Total: -77.73 0.63 -77.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947542551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.446 kcal (2) G-P(sol) polarization free energy of solvation -77.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds