Wall clock time and date at job start Tue Mar 31 2020 19:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.58842 * 2 1 4 4 C 1.53195 * 109.58440 * 120.44334 * 2 1 3 5 5 C 1.53037 * 109.31548 * 174.43826 * 4 2 1 6 6 H 1.08999 * 109.46271 * 58.62383 * 5 4 2 7 7 N 1.46496 * 109.46459 * 178.60252 * 5 4 2 8 8 C 1.34774 * 120.00127 * 205.02998 * 7 5 4 9 9 O 1.21617 * 119.99713 * 0.26542 * 8 7 5 10 10 C 1.47252 * 120.00231 * 179.97438 * 8 7 5 11 11 N 1.29773 * 125.52958 * 179.97438 * 10 8 7 12 12 C 1.32588 * 116.75418 * 180.02562 * 11 10 8 13 13 C 1.34626 * 114.31423 * 359.96201 * 12 11 10 14 14 S 1.71627 * 109.59814 * 359.78150 * 13 12 11 15 15 C 1.51943 * 110.68879 * 180.02562 * 13 12 11 16 16 C 1.54230 * 104.85120 * 17.37226 * 15 13 12 17 17 C 1.52797 * 136.15489 * 179.88470 * 12 11 10 18 18 C 1.53043 * 109.52347 * 298.61273 * 5 4 2 19 19 C 1.53196 * 109.31383 * 61.37103 * 18 5 4 20 20 N 1.46923 * 108.77444 * 305.36411 * 19 18 5 21 21 C 1.36940 * 120.63061 * 233.58760 * 20 19 18 22 22 H 1.08002 * 119.99787 * 150.17578 * 21 20 19 23 23 C 1.38815 * 119.99766 * 330.17394 * 21 20 19 24 24 N 1.31614 * 119.99825 * 344.49909 * 23 21 20 25 25 Si 1.86800 * 119.99817 * 164.49964 * 23 21 20 26 26 H 1.48497 * 109.46873 * 89.99764 * 25 23 21 27 27 H 1.48498 * 109.47079 * 210.00039 * 25 23 21 28 28 H 1.48506 * 109.47253 * 329.99973 * 25 23 21 29 29 H 1.08999 * 109.47119 * 180.28179 * 1 2 3 30 30 H 1.08993 * 109.47466 * 300.28185 * 1 2 3 31 31 H 1.09002 * 109.47052 * 60.28754 * 1 2 3 32 32 H 1.09000 * 109.51230 * 54.47790 * 4 2 1 33 33 H 1.08998 * 109.48484 * 294.38029 * 4 2 1 34 34 H 0.97004 * 120.00008 * 25.02063 * 7 5 4 35 35 H 1.09003 * 110.36496 * 136.21200 * 15 13 12 36 36 H 1.08996 * 110.36427 * 258.41155 * 15 13 12 37 37 H 1.08995 * 110.95658 * 91.61378 * 16 15 13 38 38 H 1.08996 * 110.95137 * 215.30747 * 16 15 13 39 39 H 1.09002 * 110.31468 * 281.37257 * 17 12 11 40 40 H 1.08996 * 110.31703 * 43.55903 * 17 12 11 41 41 H 1.09002 * 109.49922 * 181.32412 * 18 5 4 42 42 H 1.09000 * 109.49950 * 301.41645 * 18 5 4 43 43 H 1.08994 * 109.58581 * 65.15527 * 19 18 5 44 44 H 1.08996 * 109.58394 * 185.43693 * 19 18 5 45 45 H 0.97005 * 119.99833 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7313 1.2443 5 6 3.5674 -0.8495 1.1692 6 1 4.0059 0.1460 1.0995 7 7 4.0651 -1.5189 2.3735 8 6 5.3290 -1.3051 2.7897 9 8 6.0548 -0.5528 2.1682 10 6 5.8291 -1.9775 4.0006 11 7 7.0220 -1.8503 4.4956 12 6 7.2878 -2.5393 5.5968 13 6 6.2597 -3.2828 6.0471 14 16 4.9047 -3.0774 5.0140 15 6 6.6527 -4.0347 7.3077 16 6 7.9161 -3.3137 7.8203 17 6 8.4919 -2.7202 6.5198 18 6 3.9568 -1.6657 -0.0655 19 6 3.4650 -0.9453 -1.3249 20 7 2.0226 -0.6981 -1.1953 21 6 1.1537 -1.1100 -2.1704 22 1 0.1397 -1.3774 -1.9122 23 6 1.5764 -1.1839 -3.4906 24 7 2.6872 -0.5826 -3.8604 25 14 0.5687 -2.1366 -4.7420 26 1 -0.4249 -1.2298 -5.3710 27 1 1.4688 -2.6862 -5.7874 28 1 -0.1391 -3.2513 -4.0623 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3634 0.5182 0.8874 31 1 -0.3633 0.5094 -0.8926 32 1 1.6031 -1.7274 1.2889 33 1 1.7657 -0.1700 2.1364 34 1 3.4849 -2.1158 2.8715 35 1 5.8554 -3.9757 8.0486 36 1 6.8763 -5.0756 7.0743 37 1 7.6555 -2.5249 8.5259 38 1 8.6133 -4.0210 8.2693 39 1 9.2091 -3.4103 6.0754 40 1 8.9643 -1.7583 6.7185 41 1 5.0412 -1.7696 -0.1058 42 1 3.4983 -2.6529 -0.0085 43 1 3.9903 0.0037 -1.4316 44 1 3.6541 -1.5680 -2.1993 45 1 2.9824 -0.6339 -4.7831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947542552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:44 Heat of formation + Delta-G solvation = 31.972691 kcal Electronic energy + Delta-G solvation = -26303.162888 eV Core-core repulsion = 22640.848465 eV Total energy + Delta-G solvation = -3662.314423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73682 -39.64575 -37.69645 -36.15127 -34.67822 -32.45468 -31.48496 -29.82772 -29.07091 -28.60708 -26.46722 -25.62906 -24.45076 -22.40420 -21.94087 -21.21712 -20.24262 -19.63311 -18.91064 -18.56049 -17.12685 -16.40921 -16.23222 -15.76539 -15.19741 -15.05228 -14.48499 -14.19325 -13.97466 -13.79666 -13.67123 -13.60908 -13.32056 -13.27093 -12.82536 -12.70224 -12.50148 -11.71749 -11.61696 -11.57471 -11.47483 -11.24178 -11.13792 -10.95638 -10.91473 -10.65355 -10.43667 -10.34684 -10.15123 -10.05218 -9.76447 -9.73605 -9.73320 -9.41121 -8.95954 -8.75828 -8.43091 -6.63453 -5.76845 -3.21100 0.05178 0.79083 1.37053 2.10246 2.74214 3.15933 3.37826 3.45280 3.46509 3.74563 4.00067 4.37827 4.48091 4.49476 4.68508 4.93735 5.07600 5.16788 5.23853 5.26590 5.34596 5.38531 5.42080 5.47799 5.54248 5.64948 5.73307 5.75862 5.95642 6.13588 6.15898 6.30316 6.34564 6.40481 6.47716 6.60518 6.77322 6.80155 7.01851 7.09188 7.23155 7.37170 7.55044 7.69220 7.83230 8.13281 8.47569 9.22708 9.86265 10.43592 11.31989 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025995 B = 0.002376 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.870347 B =11781.891549 C =12002.689304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.028 0.972 4 C -0.135 4.135 5 C 0.152 3.848 6 H 0.087 0.913 7 N -0.712 5.712 8 C 0.591 3.409 9 O -0.496 6.496 10 C 0.017 3.983 11 N -0.395 5.395 12 C 0.035 3.965 13 C -0.257 4.257 14 S 0.184 5.816 15 C -0.038 4.038 16 C -0.116 4.116 17 C -0.041 4.041 18 C -0.149 4.149 19 C 0.176 3.824 20 N -0.587 5.587 21 C -0.252 4.252 22 H 0.070 0.930 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.280 1.280 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.393 0.607 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.022 0.978 44 H 0.089 0.911 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 -7.524 24.594 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.046 0.954 4 C -0.175 4.175 5 C 0.050 3.950 6 H 0.105 0.895 7 N -0.364 5.364 8 C 0.371 3.629 9 O -0.369 6.369 10 C -0.262 4.262 11 N -0.110 5.110 12 C -0.101 4.101 13 C -0.379 4.379 14 S 0.441 5.559 15 C -0.078 4.078 16 C -0.155 4.155 17 C -0.081 4.081 18 C -0.189 4.189 19 C 0.049 3.951 20 N -0.311 5.311 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.205 1.205 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.227 0.773 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.040 0.960 44 H 0.107 0.893 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.385 -6.961 23.567 25.157 hybrid contribution 0.152 -0.806 -0.098 0.826 sum 5.537 -7.767 23.469 25.333 Atomic orbital electron populations 1.21790 0.95674 1.01409 1.00412 1.20358 0.93146 0.93608 0.86514 0.95398 1.22412 0.93207 1.01882 0.99962 1.21192 0.94567 0.96858 0.82381 0.89478 1.46167 1.11888 1.48628 1.29697 1.16692 0.82669 0.81612 0.81899 1.90877 1.55969 1.35240 1.54794 1.27367 0.92734 1.03871 1.02203 1.65699 1.16663 1.19533 1.09102 1.21829 0.98262 0.96500 0.93466 1.26771 0.98452 1.06843 1.05864 1.83606 1.13161 1.41172 1.17962 1.20734 0.98014 0.98343 0.90672 1.22338 0.96300 1.00229 0.96645 1.20911 0.92999 1.02538 0.91646 1.22615 0.99973 0.99696 0.96627 1.20731 0.83275 0.97350 0.93709 1.44168 1.02967 1.64962 1.18963 1.19133 0.95163 1.37830 0.86033 0.91277 1.25118 0.97875 0.99537 0.97047 1.70019 1.24037 1.43716 1.16750 0.86345 0.79395 0.79957 0.81330 1.21433 1.21643 1.20537 0.92768 0.94280 0.91782 0.91596 0.92460 0.77292 0.90009 0.89287 0.90215 0.89279 0.89336 0.89680 0.92682 0.92430 0.95998 0.89263 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.95 37.16 0.30 -2.13 16 2 C 0.17 3.41 3.50 -67.60 -0.24 3.17 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -2.19 4.84 -26.61 -0.13 -2.31 16 5 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 6 H 0.09 1.68 7.57 -51.93 -0.39 1.29 16 7 N -0.71 -10.39 5.07 -54.90 -0.28 -10.67 16 8 C 0.59 9.82 7.77 -12.60 -0.10 9.72 16 9 O -0.50 -10.29 16.73 5.26 0.09 -10.20 16 10 C 0.02 0.24 7.44 -14.76 -0.11 0.13 16 11 N -0.40 -6.08 10.58 -6.78 -0.07 -6.15 16 12 C 0.04 0.41 7.62 -82.50 -0.63 -0.21 16 13 C -0.26 -2.49 7.17 -34.97 -0.25 -2.75 16 14 S 0.18 1.84 22.31 -107.50 -2.40 -0.55 16 15 C -0.04 -0.22 6.80 -26.62 -0.18 -0.40 16 16 C -0.12 -0.56 7.11 -25.51 -0.18 -0.74 16 17 C -0.04 -0.32 6.80 -26.25 -0.18 -0.49 16 18 C -0.15 -2.93 5.65 -26.61 -0.15 -3.09 16 19 C 0.18 4.20 5.28 -3.71 -0.02 4.18 16 20 N -0.59 -14.15 2.99 -164.78 -0.49 -14.64 16 21 C -0.25 -6.62 8.57 -15.06 -0.13 -6.74 16 22 H 0.07 1.76 6.24 -52.49 -0.33 1.43 16 23 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 24 N -0.90 -26.04 11.23 55.49 0.62 -25.41 16 25 Si 0.90 21.41 29.58 -169.99 -5.03 16.39 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.25 7.63 -51.93 -0.40 0.86 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.39 4.55 7.74 -40.82 -0.32 4.24 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -32.87 370.58 -10.99 -43.86 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.77 Total: 0.99 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.25 Total: 0.81 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.22 Total: -56.87 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.40 Total: -0.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.87 -10.99 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947542552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.834 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds