Wall clock time and date at job start Tue Mar 31 2020 19:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.58842 * 2 1 4 4 C 1.53195 * 109.58440 * 120.44334 * 2 1 3 5 5 C 1.53037 * 109.31548 * 174.43826 * 4 2 1 6 6 H 1.08999 * 109.46271 * 58.62383 * 5 4 2 7 7 N 1.46496 * 109.46459 * 178.60252 * 5 4 2 8 8 C 1.34774 * 120.00127 * 205.02998 * 7 5 4 9 9 O 1.21617 * 119.99713 * 0.26542 * 8 7 5 10 10 C 1.47252 * 120.00231 * 179.97438 * 8 7 5 11 11 N 1.29773 * 125.52958 * 179.97438 * 10 8 7 12 12 C 1.32588 * 116.75418 * 180.02562 * 11 10 8 13 13 C 1.34626 * 114.31423 * 359.96201 * 12 11 10 14 14 S 1.71627 * 109.59814 * 359.78150 * 13 12 11 15 15 C 1.51943 * 110.68879 * 180.02562 * 13 12 11 16 16 C 1.54230 * 104.85120 * 17.37226 * 15 13 12 17 17 C 1.52797 * 136.15489 * 179.88470 * 12 11 10 18 18 C 1.53043 * 109.52347 * 298.61273 * 5 4 2 19 19 C 1.53196 * 109.31383 * 61.37103 * 18 5 4 20 20 N 1.46923 * 108.77444 * 305.36411 * 19 18 5 21 21 C 1.36940 * 120.63061 * 233.58760 * 20 19 18 22 22 H 1.08002 * 119.99787 * 150.17578 * 21 20 19 23 23 C 1.38815 * 119.99766 * 330.17394 * 21 20 19 24 24 N 1.31614 * 119.99825 * 344.49909 * 23 21 20 25 25 Si 1.86800 * 119.99817 * 164.49964 * 23 21 20 26 26 H 1.48497 * 109.46873 * 89.99764 * 25 23 21 27 27 H 1.48498 * 109.47079 * 210.00039 * 25 23 21 28 28 H 1.48506 * 109.47253 * 329.99973 * 25 23 21 29 29 H 1.08999 * 109.47119 * 180.28179 * 1 2 3 30 30 H 1.08993 * 109.47466 * 300.28185 * 1 2 3 31 31 H 1.09002 * 109.47052 * 60.28754 * 1 2 3 32 32 H 1.09000 * 109.51230 * 54.47790 * 4 2 1 33 33 H 1.08998 * 109.48484 * 294.38029 * 4 2 1 34 34 H 0.97004 * 120.00008 * 25.02063 * 7 5 4 35 35 H 1.09003 * 110.36496 * 136.21200 * 15 13 12 36 36 H 1.08996 * 110.36427 * 258.41155 * 15 13 12 37 37 H 1.08995 * 110.95658 * 91.61378 * 16 15 13 38 38 H 1.08996 * 110.95137 * 215.30747 * 16 15 13 39 39 H 1.09002 * 110.31468 * 281.37257 * 17 12 11 40 40 H 1.08996 * 110.31703 * 43.55903 * 17 12 11 41 41 H 1.09002 * 109.49922 * 181.32412 * 18 5 4 42 42 H 1.09000 * 109.49950 * 301.41645 * 18 5 4 43 43 H 1.08994 * 109.58581 * 65.15527 * 19 18 5 44 44 H 1.08996 * 109.58394 * 185.43693 * 19 18 5 45 45 H 0.97005 * 119.99833 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7313 1.2443 5 6 3.5674 -0.8495 1.1692 6 1 4.0059 0.1460 1.0995 7 7 4.0651 -1.5189 2.3735 8 6 5.3290 -1.3051 2.7897 9 8 6.0548 -0.5528 2.1682 10 6 5.8291 -1.9775 4.0006 11 7 7.0220 -1.8503 4.4956 12 6 7.2878 -2.5393 5.5968 13 6 6.2597 -3.2828 6.0471 14 16 4.9047 -3.0774 5.0140 15 6 6.6527 -4.0347 7.3077 16 6 7.9161 -3.3137 7.8203 17 6 8.4919 -2.7202 6.5198 18 6 3.9568 -1.6657 -0.0655 19 6 3.4650 -0.9453 -1.3249 20 7 2.0226 -0.6981 -1.1953 21 6 1.1537 -1.1100 -2.1704 22 1 0.1397 -1.3774 -1.9122 23 6 1.5764 -1.1839 -3.4906 24 7 2.6872 -0.5826 -3.8604 25 14 0.5687 -2.1366 -4.7420 26 1 -0.4249 -1.2298 -5.3710 27 1 1.4688 -2.6862 -5.7874 28 1 -0.1391 -3.2513 -4.0623 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3634 0.5182 0.8874 31 1 -0.3633 0.5094 -0.8926 32 1 1.6031 -1.7274 1.2889 33 1 1.7657 -0.1700 2.1364 34 1 3.4849 -2.1158 2.8715 35 1 5.8554 -3.9757 8.0486 36 1 6.8763 -5.0756 7.0743 37 1 7.6555 -2.5249 8.5259 38 1 8.6133 -4.0210 8.2693 39 1 9.2091 -3.4103 6.0754 40 1 8.9643 -1.7583 6.7185 41 1 5.0412 -1.7696 -0.1058 42 1 3.4983 -2.6529 -0.0085 43 1 3.9903 0.0037 -1.4316 44 1 3.6541 -1.5680 -2.1993 45 1 2.9824 -0.6339 -4.7831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947542552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:43 Heat of formation + Delta-G solvation = 9.983526 kcal Electronic energy + Delta-G solvation = -26304.116410 eV Core-core repulsion = 22640.848465 eV Total energy + Delta-G solvation = -3663.267945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66374 -40.88138 -39.26931 -36.90008 -36.22659 -34.26673 -33.09875 -31.52470 -29.75730 -29.44456 -28.01124 -26.95962 -25.96433 -23.82576 -23.07862 -22.27289 -21.64112 -21.07531 -20.06251 -19.43406 -18.40196 -17.99654 -17.26235 -17.02023 -16.80143 -16.26357 -15.81349 -15.62462 -15.31252 -15.13421 -14.92064 -14.80571 -14.56221 -14.30512 -14.25277 -13.77600 -13.32932 -13.06395 -12.96134 -12.72558 -12.71004 -12.60907 -12.37397 -12.35792 -12.14236 -12.12031 -11.95204 -11.87529 -11.73813 -11.63659 -11.54685 -11.18592 -10.71036 -10.55719 -10.53141 -10.25397 -9.64879 -8.63479 -7.82826 -5.29468 -0.87039 -0.06350 0.51281 1.12345 1.47991 1.49889 1.58639 1.60383 2.01274 2.53881 2.92213 3.33898 3.44106 3.51459 3.61913 3.82343 3.96011 4.01323 4.13346 4.23744 4.36690 4.37954 4.50415 4.60373 4.66747 4.71931 4.74310 4.78292 4.79618 4.86488 4.95237 5.04399 5.05361 5.08180 5.15472 5.15709 5.29048 5.33734 5.38918 5.52082 5.57620 5.70917 5.74763 6.16255 6.44445 6.55189 6.92041 7.18025 7.89732 8.43147 9.24928 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025995 B = 0.002376 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.870347 B =11781.891549 C =12002.689304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.159 3.841 3 H 0.012 0.988 4 C -0.119 4.119 5 C 0.163 3.837 6 H 0.062 0.938 7 N -0.694 5.694 8 C 0.592 3.408 9 O -0.553 6.553 10 C -0.037 4.037 11 N -0.436 5.436 12 C 0.000 4.000 13 C -0.245 4.245 14 S 0.263 5.737 15 C -0.039 4.039 16 C -0.105 4.105 17 C -0.045 4.045 18 C -0.133 4.133 19 C 0.185 3.815 20 N -0.602 5.602 21 C -0.247 4.247 22 H 0.082 0.918 23 C -0.058 4.058 24 N -0.942 5.942 25 Si 0.964 3.036 26 H -0.286 1.286 27 H -0.300 1.300 28 H -0.265 1.265 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.412 0.588 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.067 0.933 43 H -0.012 1.012 44 H 0.055 0.945 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 -10.097 28.799 30.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.030 0.970 4 C -0.158 4.158 5 C 0.059 3.941 6 H 0.081 0.919 7 N -0.347 5.347 8 C 0.375 3.625 9 O -0.430 6.430 10 C -0.312 4.312 11 N -0.153 5.153 12 C -0.136 4.136 13 C -0.368 4.368 14 S 0.520 5.480 15 C -0.079 4.079 16 C -0.144 4.144 17 C -0.085 4.085 18 C -0.173 4.173 19 C 0.058 3.942 20 N -0.326 5.326 21 C -0.377 4.377 22 H 0.100 0.900 23 C -0.253 4.253 24 N -0.588 5.588 25 Si 0.792 3.208 26 H -0.213 1.213 27 H -0.227 1.227 28 H -0.190 1.190 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.249 0.751 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.006 0.994 44 H 0.074 0.926 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.487 -9.556 27.822 29.623 hybrid contribution 0.747 -0.030 -1.245 1.452 sum 4.233 -9.586 26.577 28.568 Atomic orbital electron populations 1.21709 0.93610 1.01863 1.01210 1.20649 0.94905 0.92903 0.86278 0.97013 1.22231 0.91534 1.02788 0.99256 1.20843 0.95604 0.95319 0.82356 0.91940 1.45779 1.11717 1.48466 1.28697 1.17067 0.82424 0.80763 0.82280 1.90835 1.57396 1.37825 1.56937 1.26747 0.94174 1.07152 1.03146 1.65650 1.17878 1.20962 1.10778 1.22467 1.00633 0.97126 0.93363 1.27569 0.97606 1.05265 1.06339 1.83177 1.11316 1.37867 1.15647 1.21028 0.99033 0.98767 0.89022 1.22387 0.96158 1.00754 0.95080 1.21131 0.92106 1.02854 0.92374 1.22352 0.99097 0.99893 0.95986 1.20411 0.83810 0.95440 0.94547 1.44427 1.02514 1.65674 1.19998 1.19538 0.95671 1.36092 0.86380 0.90047 1.25906 0.99142 1.01090 0.99150 1.70203 1.26138 1.45958 1.16538 0.85328 0.77733 0.78889 0.78825 1.21307 1.22688 1.18986 0.92392 0.90338 0.94159 0.89980 0.88792 0.75059 0.87793 0.87301 0.89579 0.86445 0.88737 0.90112 0.93858 0.91399 0.99432 0.92641 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 7.95 71.98 0.57 -3.66 16 2 C 0.16 6.20 3.50 44.97 0.16 6.36 16 3 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 4 C -0.12 -3.57 4.84 30.67 0.15 -3.42 16 5 C 0.16 5.62 2.42 45.02 0.11 5.73 16 6 H 0.06 2.51 7.57 -2.39 -0.02 2.49 16 7 N -0.69 -19.70 5.07 -445.86 -2.26 -21.97 16 8 C 0.59 20.19 7.77 86.61 0.67 20.86 16 9 O -0.55 -24.47 16.73 -4.09 -0.07 -24.54 16 10 C -0.04 -1.07 7.44 87.37 0.65 -0.42 16 11 N -0.44 -13.67 10.58 -175.37 -1.86 -15.52 16 12 C 0.00 0.00 7.62 42.30 0.32 0.32 16 13 C -0.24 -4.03 7.17 25.26 0.18 -3.85 16 14 S 0.26 4.54 22.31 -56.49 -1.26 3.28 16 15 C -0.04 -0.28 6.80 30.66 0.21 -0.07 16 16 C -0.10 -0.60 7.11 31.39 0.22 -0.37 16 17 C -0.05 -0.61 6.80 30.90 0.21 -0.40 16 18 C -0.13 -5.41 5.65 30.67 0.17 -5.24 16 19 C 0.18 9.35 5.28 86.36 0.46 9.80 16 20 N -0.60 -29.56 2.99 -675.23 -2.02 -31.58 16 21 C -0.25 -13.04 8.57 84.03 0.72 -12.32 16 22 H 0.08 4.05 6.24 -2.91 -0.02 4.03 16 23 C -0.06 -3.26 4.94 84.86 0.42 -2.84 16 24 N -0.94 -57.13 11.23 21.65 0.24 -56.89 16 25 Si 0.96 44.84 29.58 68.60 2.03 46.87 16 26 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H 0.06 1.89 7.44 -2.39 -0.02 1.88 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.52 7.63 -2.39 -0.02 1.50 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.41 8.49 7.74 -92.71 -0.72 7.77 16 35 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 38 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 43 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 44 H 0.06 3.16 6.15 -2.39 -0.01 3.15 16 45 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -78.33 370.58 0.33 -78.01 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.29 Total: 11.85 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.22 Total: 10.49 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -5.89 Total: -125.96 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.07 Total: -24.54 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.26 Total: 3.28 kcal Total: -78.33 0.33 -78.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947542552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.990 kcal (2) G-P(sol) polarization free energy of solvation -78.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds