Wall clock time and date at job start Tue Mar 31 2020 19:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.70440 * 2 1 4 4 C 1.53200 * 109.58293 * 120.35031 * 2 1 3 5 5 C 1.53044 * 109.33845 * 174.44015 * 4 2 1 6 6 H 1.08991 * 109.46219 * 178.59942 * 5 4 2 7 7 N 1.46501 * 109.46069 * 58.63662 * 5 4 2 8 8 C 1.34773 * 119.99911 * 155.00690 * 7 5 4 9 9 O 1.21614 * 120.00100 * 359.97438 * 8 7 5 10 10 C 1.47255 * 120.00158 * 180.02562 * 8 7 5 11 11 N 1.29761 * 125.52795 * 179.97438 * 10 8 7 12 12 C 1.32601 * 116.75531 * 179.97438 * 11 10 8 13 13 C 1.34623 * 114.30635 * 359.95283 * 12 11 10 14 14 S 1.71622 * 109.60430 * 359.82479 * 13 12 11 15 15 C 1.51945 * 110.68592 * 180.08243 * 13 12 11 16 16 C 1.54234 * 104.84871 * 17.37195 * 15 13 12 17 17 C 1.52791 * 136.15893 * 179.87681 * 12 11 10 18 18 C 1.53042 * 109.53434 * 298.61836 * 5 4 2 19 19 C 1.53195 * 109.31474 * 61.36478 * 18 5 4 20 20 N 1.46926 * 108.77596 * 305.36232 * 19 18 5 21 21 C 1.36929 * 120.63202 * 233.63374 * 20 19 18 22 22 H 1.08000 * 120.00121 * 150.17592 * 21 20 19 23 23 C 1.38812 * 120.00049 * 330.16633 * 21 20 19 24 24 N 1.31622 * 119.99895 * 344.48517 * 23 21 20 25 25 Si 1.86799 * 120.00244 * 164.48485 * 23 21 20 26 26 H 1.48500 * 109.47219 * 90.00198 * 25 23 21 27 27 H 1.48500 * 109.47238 * 210.00512 * 25 23 21 28 28 H 1.48504 * 109.47029 * 330.00569 * 25 23 21 29 29 H 1.09004 * 109.47313 * 299.65270 * 1 2 3 30 30 H 1.09003 * 109.47215 * 59.64775 * 1 2 3 31 31 H 1.08997 * 109.47403 * 179.65276 * 1 2 3 32 32 H 1.08998 * 109.50089 * 54.46914 * 4 2 1 33 33 H 1.09002 * 109.49854 * 294.40169 * 4 2 1 34 34 H 0.97006 * 119.99928 * 334.99719 * 7 5 4 35 35 H 1.09004 * 110.36416 * 136.21005 * 15 13 12 36 36 H 1.08999 * 110.36606 * 258.42000 * 15 13 12 37 37 H 1.09003 * 110.95375 * 91.61647 * 16 15 13 38 38 H 1.08994 * 110.95431 * 215.30511 * 16 15 13 39 39 H 1.08999 * 110.31424 * 281.37966 * 17 12 11 40 40 H 1.08997 * 110.31712 * 43.56088 * 17 12 11 41 41 H 1.08999 * 109.49555 * 181.32031 * 18 5 4 42 42 H 1.08998 * 109.49775 * 301.40988 * 18 5 4 43 43 H 1.08993 * 109.58735 * 65.15490 * 19 18 5 44 44 H 1.09001 * 109.58164 * 185.57877 * 19 18 5 45 45 H 0.97004 * 120.00038 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2456 5 6 3.5675 -0.8479 1.1712 6 1 3.9373 -1.3444 2.0682 7 7 4.1571 0.4898 1.0759 8 6 5.4209 0.7005 1.4937 9 8 6.0718 -0.2197 1.9504 10 6 6.0134 2.0453 1.3985 11 7 7.2149 2.3678 1.7677 12 6 7.5703 3.6345 1.6023 13 6 6.6129 4.4131 1.0643 14 16 5.2101 3.4726 0.7590 15 6 7.1066 5.8418 0.9101 16 6 8.6421 5.7429 1.0157 17 6 8.8193 4.4727 1.8708 18 6 3.9575 -1.6660 -0.0620 19 6 3.4663 -0.9477 -1.3227 20 7 2.0238 -0.7003 -1.1944 21 6 1.1554 -1.1146 -2.1687 22 1 0.1413 -1.3814 -1.9104 23 6 1.5785 -1.1914 -3.4885 24 7 2.6893 -0.5906 -3.8596 25 14 0.5716 -2.1476 -4.7381 26 1 -0.4221 -1.2427 -5.3697 27 1 1.4724 -2.6993 -5.7818 28 1 -0.1360 -3.2608 -4.0560 29 1 -0.3634 0.5084 0.8931 30 1 -0.3634 0.5193 -0.8868 31 1 -0.3634 -1.0276 -0.0062 32 1 1.6029 -1.7252 1.2916 33 1 1.7655 -0.1669 2.1370 34 1 3.6378 1.2239 0.7119 35 1 6.8182 6.2398 -0.0628 36 1 6.7094 6.4686 1.7085 37 1 9.0932 5.6165 0.0314 38 1 9.0549 6.6151 1.5224 39 1 8.8806 4.7328 2.9275 40 1 9.7127 3.9303 1.5615 41 1 5.0418 -1.7700 -0.1015 42 1 3.4989 -2.6531 -0.0036 43 1 3.9917 0.0012 -1.4308 44 1 3.6536 -1.5729 -2.1958 45 1 2.9852 -0.6446 -4.7818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947542553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:48 Heat of formation + Delta-G solvation = 34.041037 kcal Electronic energy + Delta-G solvation = -27001.889276 eV Core-core repulsion = 23339.664544 eV Total energy + Delta-G solvation = -3662.224733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58704 -39.68089 -37.70304 -35.98751 -34.37767 -32.40458 -31.44047 -29.87494 -28.92922 -28.48486 -26.47329 -25.44085 -24.75789 -22.31416 -21.94767 -21.07101 -20.62430 -19.11339 -18.81315 -18.29308 -17.02743 -16.39151 -16.20693 -15.50689 -15.11729 -14.96517 -14.36617 -14.16912 -14.06775 -13.77096 -13.64884 -13.49766 -13.17214 -13.14841 -12.82334 -12.50073 -12.34422 -11.88536 -11.57050 -11.47196 -11.37674 -11.32642 -11.24062 -11.03255 -10.70303 -10.67342 -10.45259 -10.29237 -10.16181 -10.12787 -9.73052 -9.55057 -9.53683 -9.33681 -8.85146 -8.62347 -8.48122 -6.65784 -5.80056 -3.24613 0.22479 0.98562 1.57322 2.24992 2.89591 3.30373 3.35622 3.43658 3.44991 3.89929 4.15191 4.46730 4.53175 4.62032 4.83982 5.07664 5.22471 5.27857 5.30511 5.32830 5.34352 5.40641 5.51878 5.56587 5.61538 5.62339 5.78455 5.90608 5.93875 6.05605 6.15972 6.27192 6.30592 6.40578 6.50989 6.56714 6.70058 6.87386 6.95768 7.01465 7.33646 7.38614 7.64810 7.69515 7.80455 8.25560 8.43905 9.19370 9.82774 10.39642 11.28195 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.003174 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.033656 B = 8818.986143 C = 9404.596236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.167 3.833 3 H 0.018 0.982 4 C -0.140 4.140 5 C 0.156 3.844 6 H 0.078 0.922 7 N -0.701 5.701 8 C 0.595 3.405 9 O -0.507 6.507 10 C 0.013 3.987 11 N -0.397 5.397 12 C 0.032 3.968 13 C -0.259 4.259 14 S 0.200 5.800 15 C -0.038 4.038 16 C -0.116 4.116 17 C -0.040 4.040 18 C -0.156 4.156 19 C 0.175 3.825 20 N -0.586 5.586 21 C -0.252 4.252 22 H 0.069 0.931 23 C 0.004 3.996 24 N -0.901 5.901 25 Si 0.899 3.101 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.280 1.280 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.400 0.600 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.017 0.983 44 H 0.086 0.914 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.316 12.911 11.151 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.036 0.964 4 C -0.180 4.180 5 C 0.053 3.947 6 H 0.097 0.903 7 N -0.354 5.354 8 C 0.375 3.625 9 O -0.382 6.382 10 C -0.265 4.265 11 N -0.112 5.112 12 C -0.104 4.104 13 C -0.382 4.382 14 S 0.457 5.543 15 C -0.078 4.078 16 C -0.155 4.155 17 C -0.079 4.079 18 C -0.196 4.196 19 C 0.049 3.951 20 N -0.310 5.310 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.194 4.194 24 N -0.546 5.546 25 Si 0.729 3.271 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.104 0.896 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.111 11.936 11.096 17.405 hybrid contribution 0.167 0.178 -0.774 0.811 sum 6.278 12.114 10.322 17.109 Atomic orbital electron populations 1.21795 0.95664 1.01652 1.00295 1.20410 0.93332 0.92995 0.87278 0.96436 1.22398 0.93500 1.02694 0.99378 1.21016 0.93214 0.81174 0.99298 0.90349 1.45968 1.12874 1.13464 1.63136 1.16634 0.82131 0.84622 0.79065 1.90821 1.60646 1.41957 1.44736 1.27259 0.93577 0.98745 1.06939 1.65696 1.13565 1.16746 1.15182 1.21794 0.99057 0.87164 1.02378 1.26816 0.99151 1.04268 1.07923 1.83875 1.13290 1.01286 1.55801 1.20727 0.95289 0.88580 1.03183 1.22346 0.94741 0.97505 1.00952 1.20889 0.93098 0.92934 1.01002 1.22593 1.00170 0.99557 0.97278 1.20710 0.83175 0.97087 0.94093 1.44143 1.02949 1.64915 1.18964 1.19133 0.95175 1.37797 0.86046 0.91292 1.25090 0.97835 0.99509 0.97003 1.70020 1.24039 1.43779 1.16717 0.86353 0.79391 0.80016 0.81313 1.21467 1.21653 1.20502 0.94261 0.91896 0.92566 0.90213 0.92379 0.76401 0.89931 0.89379 0.90182 0.89387 0.89497 0.89793 0.92579 0.91350 0.96473 0.89573 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.95 37.16 0.30 -2.07 16 2 C 0.17 3.14 3.20 -67.56 -0.22 2.92 16 3 H 0.02 0.34 6.64 -51.93 -0.34 -0.01 16 4 C -0.14 -2.25 5.07 -26.60 -0.13 -2.38 16 5 C 0.16 2.68 2.78 -67.89 -0.19 2.49 16 6 H 0.08 1.33 7.58 -51.93 -0.39 0.93 16 7 N -0.70 -11.70 4.26 -54.90 -0.23 -11.93 16 8 C 0.59 10.74 7.77 -12.60 -0.10 10.64 16 9 O -0.51 -10.68 16.73 5.27 0.09 -10.59 16 10 C 0.01 0.21 7.44 -14.76 -0.11 0.10 16 11 N -0.40 -6.69 10.58 -6.78 -0.07 -6.77 16 12 C 0.03 0.43 7.62 -82.50 -0.63 -0.20 16 13 C -0.26 -3.05 7.17 -34.97 -0.25 -3.30 16 14 S 0.20 2.58 22.31 -107.50 -2.40 0.19 16 15 C -0.04 -0.30 6.80 -26.62 -0.18 -0.48 16 16 C -0.12 -0.75 7.11 -25.49 -0.18 -0.93 16 17 C -0.04 -0.35 6.81 -26.24 -0.18 -0.53 16 18 C -0.16 -3.05 5.77 -26.61 -0.15 -3.21 16 19 C 0.18 4.05 5.03 -3.71 -0.02 4.03 16 20 N -0.59 -13.60 2.99 -164.72 -0.49 -14.09 16 21 C -0.25 -6.47 8.58 -15.06 -0.13 -6.60 16 22 H 0.07 1.73 6.23 -52.49 -0.33 1.40 16 23 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 24 N -0.90 -25.43 11.23 55.49 0.62 -24.80 16 25 Si 0.90 21.17 29.58 -169.99 -5.03 16.14 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.19 7.67 -51.93 -0.40 0.79 16 31 H 0.06 0.99 7.40 -51.93 -0.38 0.61 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.40 6.29 6.01 -40.82 -0.25 6.04 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 44 H 0.09 2.28 6.15 -51.93 -0.32 1.96 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -31.78 366.31 -10.85 -42.63 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.60 Total: 3.18 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.26 Total: 0.53 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.17 Total: -57.60 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.40 Total: 0.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.78 -10.85 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947542553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.670 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds