Wall clock time and date at job start Tue Mar 31 2020 19:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58416 * 2 1 4 4 C 1.53194 * 109.58454 * 120.42909 * 2 1 3 5 5 C 1.53043 * 109.31000 * 174.42629 * 4 2 1 6 6 H 1.09000 * 109.46416 * 58.65193 * 5 4 2 7 7 N 1.46502 * 109.45919 * 178.62468 * 5 4 2 8 8 C 1.34774 * 119.99993 * 204.99739 * 7 5 4 9 9 O 1.21633 * 119.99915 * 0.02562 * 8 7 5 10 10 C 1.47266 * 119.99694 * 180.02562 * 8 7 5 11 11 N 1.33560 * 123.14360 * 359.70418 * 10 8 7 12 12 C 1.28650 * 115.76376 * 179.82808 * 11 10 8 13 13 S 1.70769 * 110.56093 * 0.42750 * 12 11 10 14 14 C 1.35208 * 123.13581 * 180.02562 * 10 8 7 15 15 C 1.50696 * 125.59067 * 359.97438 * 14 10 8 16 16 C 1.53002 * 117.50131 * 188.74580 * 15 14 10 17 17 C 1.53005 * 117.49741 * 120.08536 * 15 14 10 18 18 C 1.53038 * 109.53784 * 298.63159 * 5 4 2 19 19 C 1.52765 * 109.38424 * 61.24001 * 18 5 4 20 20 N 1.46924 * 109.58908 * 239.71713 * 2 1 3 21 21 C 1.36940 * 120.62954 * 6.57746 * 20 2 1 22 22 H 1.07998 * 119.99935 * 330.98160 * 21 20 2 23 23 C 1.38807 * 119.99862 * 150.97806 * 21 20 2 24 24 N 1.31628 * 120.00356 * 336.07655 * 23 21 20 25 25 Si 1.86800 * 120.00149 * 156.07948 * 23 21 20 26 26 H 1.48504 * 109.47268 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.46887 * 299.99602 * 25 23 21 28 28 H 1.48493 * 109.47418 * 59.99607 * 25 23 21 29 29 H 1.09007 * 109.47126 * 180.28080 * 1 2 3 30 30 H 1.08998 * 109.47477 * 300.28209 * 1 2 3 31 31 H 1.08996 * 109.47286 * 60.28460 * 1 2 3 32 32 H 1.09005 * 109.49477 * 294.37343 * 4 2 1 33 33 H 1.08995 * 109.49927 * 54.46902 * 4 2 1 34 34 H 0.97001 * 119.99881 * 25.00063 * 7 5 4 35 35 H 1.07993 * 124.71741 * 180.19182 * 12 11 10 36 36 H 1.08996 * 115.55247 * 334.42271 * 15 14 10 37 37 H 1.09005 * 117.49789 * 0.02562 * 16 15 14 38 38 H 1.09002 * 117.50009 * 145.02150 * 16 15 14 39 39 H 1.08996 * 117.50131 * 214.98023 * 17 15 14 40 40 H 1.08998 * 117.50263 * 359.97438 * 17 15 14 41 41 H 1.08999 * 109.49855 * 181.31880 * 18 5 4 42 42 H 1.09002 * 109.49456 * 301.41850 * 18 5 4 43 43 H 1.08997 * 109.50761 * 185.70928 * 19 18 5 44 44 H 1.08995 * 109.43030 * 65.42464 * 19 18 5 45 45 H 0.97004 * 119.99318 * 354.30837 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 3.5675 -0.8494 1.1691 6 1 4.0061 0.1460 1.0995 7 7 4.0652 -1.5190 2.3734 8 6 5.3294 -1.3060 2.7891 9 8 6.0569 -0.5575 2.1647 10 6 5.8298 -1.9795 3.9994 11 7 5.0842 -2.8083 4.7349 12 6 5.6656 -3.3214 5.7615 13 16 7.2728 -2.7574 5.8848 14 6 7.0849 -1.8116 4.4732 15 6 8.1446 -0.9345 3.8579 16 6 9.5623 -1.0359 4.4244 17 6 8.7079 0.2005 4.7156 18 6 3.9570 -1.6656 -0.0655 19 6 3.4645 -0.9502 -1.3223 20 7 2.0226 -0.6980 -1.1953 21 6 1.1537 -1.1108 -2.1699 22 1 0.1361 -1.3660 -1.9133 23 6 1.5808 -1.2012 -3.4876 24 7 2.6038 -0.4821 -3.8987 25 14 0.7037 -2.3432 -4.6775 26 1 1.3486 -2.2573 -6.0124 27 1 0.7873 -3.7388 -4.1768 28 1 -0.7217 -1.9420 -4.7891 29 1 -0.3634 -1.0277 0.0050 30 1 -0.3634 0.5182 0.8874 31 1 -0.3634 0.5094 -0.8925 32 1 1.7659 -0.1695 2.1366 33 1 1.6029 -1.7269 1.2892 34 1 3.4848 -2.1156 2.8715 35 1 5.2007 -4.0097 6.4516 36 1 8.0420 -0.7533 2.7880 37 1 9.7285 -1.7374 5.2420 38 1 10.3923 -0.9212 3.7273 39 1 8.9762 1.1280 4.2100 40 1 8.3117 0.3130 5.7248 41 1 5.0413 -1.7694 -0.1058 42 1 3.4983 -2.6527 -0.0085 43 1 3.6504 -1.5770 -2.1944 44 1 3.9928 -0.0031 -1.4310 45 1 3.0069 0.1711 -3.3056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947719664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:16 Heat of formation + Delta-G solvation = 28.895582 kcal Electronic energy + Delta-G solvation = -26799.229077 eV Core-core repulsion = 23136.781220 eV Total energy + Delta-G solvation = -3662.447857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76166 -40.31025 -39.14415 -38.23892 -36.29531 -34.41443 -33.15930 -31.66260 -31.02301 -28.19692 -27.33937 -26.35133 -24.22626 -23.60465 -23.37242 -23.06406 -22.16770 -21.35254 -20.58348 -19.24019 -18.91931 -17.98251 -17.11421 -16.87733 -16.62067 -16.46646 -16.02189 -15.55977 -15.43004 -15.26551 -15.19140 -15.11518 -14.83809 -14.71286 -14.29208 -13.53603 -13.17200 -13.10017 -13.05286 -12.81395 -12.72116 -12.55538 -12.42162 -12.37460 -12.12249 -11.99020 -11.92440 -11.82192 -11.74785 -11.63475 -11.17613 -10.95567 -10.76073 -10.46199 -10.28697 -10.22921 -9.82298 -8.92448 -8.19332 -5.37072 -0.56188 0.17884 0.58105 0.90533 1.58359 1.66418 1.84280 2.09873 2.23102 2.67043 2.86038 3.08434 3.23520 3.39525 3.46669 3.69854 3.73494 3.88757 3.98078 4.03547 4.12043 4.14445 4.20727 4.43665 4.50292 4.54517 4.58040 4.63779 4.65189 4.79688 4.84103 4.90846 4.91570 4.95632 4.99972 5.11014 5.11748 5.13683 5.18771 5.38541 5.43449 5.48284 5.93791 6.24201 6.41920 6.57753 7.07453 7.09648 7.81111 8.26687 9.05243 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.002654 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.749482 B =10546.889309 C =10955.933731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.162 3.838 3 H 0.014 0.986 4 C -0.118 4.118 5 C 0.164 3.836 6 H 0.062 0.938 7 N -0.698 5.698 8 C 0.585 3.415 9 O -0.565 6.565 10 C -0.030 4.030 11 N -0.464 5.464 12 C -0.006 4.006 13 S 0.285 5.715 14 C -0.166 4.166 15 C -0.120 4.120 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.125 4.125 19 C 0.165 3.835 20 N -0.610 5.610 21 C -0.342 4.342 22 H 0.066 0.934 23 C -0.082 4.082 24 N -0.950 5.950 25 Si 1.113 2.887 26 H -0.297 1.297 27 H -0.281 1.281 28 H -0.273 1.273 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.414 0.586 35 H 0.244 0.756 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.046 0.954 44 H -0.003 1.003 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.034 -5.734 26.886 29.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.056 3.944 3 H 0.032 0.968 4 C -0.157 4.157 5 C 0.059 3.941 6 H 0.080 0.920 7 N -0.347 5.347 8 C 0.370 3.630 9 O -0.445 6.445 10 C -0.164 4.164 11 N -0.178 5.178 12 C -0.305 4.305 13 S 0.542 5.458 14 C -0.290 4.290 15 C -0.140 4.140 16 C -0.192 4.192 17 C -0.193 4.193 18 C -0.166 4.166 19 C 0.038 3.962 20 N -0.335 5.335 21 C -0.472 4.472 22 H 0.084 0.916 23 C -0.278 4.278 24 N -0.592 5.592 25 Si 0.938 3.062 26 H -0.223 1.223 27 H -0.207 1.207 28 H -0.199 1.199 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.251 0.749 35 H 0.260 0.740 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.015 0.985 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.678 -6.165 25.506 28.330 hybrid contribution -0.632 1.067 0.198 1.255 sum 10.046 -5.099 25.704 28.065 Atomic orbital electron populations 1.21679 0.93784 1.01597 1.01038 1.20616 0.94846 0.92759 0.86133 0.96804 1.22177 0.92436 1.02130 0.98967 1.20697 0.95024 0.95256 0.83126 0.91953 1.45896 1.13037 1.47987 1.27825 1.17518 0.81952 0.80468 0.83015 1.90739 1.56990 1.38942 1.57818 1.20097 0.92168 1.04017 1.00086 1.66935 1.35730 1.09231 1.05946 1.29035 0.96881 1.04932 0.99691 1.82390 1.12627 1.33483 1.17316 1.25108 0.98046 1.03749 1.02143 1.20601 0.92389 1.01215 0.99844 1.23295 0.92005 1.00511 1.03344 1.23179 1.02199 0.93425 1.00515 1.22145 0.99211 0.99487 0.95709 1.20557 0.84537 0.95536 0.95556 1.44475 1.02319 1.66103 1.20637 1.20241 0.96357 1.41890 0.88671 0.91599 1.27196 1.00573 1.02018 0.98007 1.70898 1.27692 1.22687 1.37942 0.82877 0.74866 0.74716 0.73732 1.22318 1.20718 1.19862 0.92865 0.90394 0.94199 0.89360 0.91007 0.74905 0.73994 0.86853 0.86750 0.86661 0.87643 0.87456 0.93284 0.92264 0.93530 0.98484 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 7.94 71.98 0.57 -3.98 16 2 C 0.16 6.77 3.50 44.98 0.16 6.93 16 3 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 4 C -0.12 -4.00 4.84 30.67 0.15 -3.85 16 5 C 0.16 6.04 2.42 45.02 0.11 6.15 16 6 H 0.06 2.58 7.58 -2.39 -0.02 2.56 16 7 N -0.70 -22.34 5.07 -445.81 -2.26 -24.60 16 8 C 0.59 19.87 7.76 86.62 0.67 20.54 16 9 O -0.57 -22.54 13.82 -4.14 -0.06 -22.60 16 10 C -0.03 -0.81 6.70 40.56 0.27 -0.54 16 11 N -0.46 -10.45 10.12 -193.03 -1.95 -12.41 16 12 C -0.01 -0.09 12.17 130.71 1.59 1.51 16 13 S 0.28 3.34 21.77 -56.49 -1.23 2.11 16 14 C -0.17 -3.69 6.04 24.99 0.15 -3.54 16 15 C -0.12 -2.70 5.40 -11.54 -0.06 -2.76 16 16 C -0.15 -2.19 10.03 30.62 0.31 -1.88 16 17 C -0.16 -2.58 10.24 30.62 0.31 -2.27 16 18 C -0.13 -5.32 5.63 30.53 0.17 -5.15 16 19 C 0.16 8.42 4.66 86.22 0.40 8.82 16 20 N -0.61 -31.14 2.84 -676.06 -1.92 -33.06 16 21 C -0.34 -18.98 8.50 84.03 0.71 -18.26 16 22 H 0.07 3.55 6.27 -2.91 -0.02 3.53 16 23 C -0.08 -4.77 4.70 84.86 0.40 -4.37 16 24 N -0.95 -59.90 12.46 21.65 0.27 -59.63 16 25 Si 1.11 51.92 29.98 68.60 2.06 53.97 16 26 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H 0.05 1.97 7.44 -2.38 -0.02 1.95 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.63 7.62 -2.39 -0.02 1.61 16 32 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.41 11.58 8.12 -92.71 -0.75 10.83 16 35 H 0.24 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.11 3.40 6.16 -2.39 -0.01 3.38 16 37 H 0.11 1.14 7.28 -2.38 -0.02 1.12 16 38 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 42 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.05 2.67 6.39 -2.39 -0.02 2.66 16 44 H 0.00 -0.15 7.85 -2.39 -0.02 -0.17 16 45 H 0.25 16.32 6.68 -92.71 -0.62 15.70 16 Total: -1.00 -75.29 370.64 1.23 -74.05 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.41 Total: 24.83 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.92 Total: -2.66 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -5.87 Total: -129.70 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.06 Total: -22.60 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.06 Total: 53.97 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.23 Total: 2.11 kcal Total: -75.29 1.23 -74.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947719664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.948 kcal (2) G-P(sol) polarization free energy of solvation -75.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds