Wall clock time and date at job start Tue Mar 31 2020 19:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.58288 * 2 1 4 4 C 1.53191 * 109.58694 * 239.71928 * 2 1 3 5 5 C 1.53040 * 109.31681 * 185.43164 * 4 2 1 6 6 H 1.08992 * 109.44890 * 181.37554 * 5 4 2 7 7 N 1.46498 * 109.45653 * 301.34730 * 5 4 2 8 8 C 1.34774 * 119.99630 * 205.06413 * 7 5 4 9 9 O 1.21639 * 120.00386 * 359.97438 * 8 7 5 10 10 C 1.47265 * 120.00345 * 180.02562 * 8 7 5 11 11 N 1.33566 * 123.13930 * 359.70681 * 10 8 7 12 12 C 1.28649 * 115.76597 * 179.83330 * 11 10 8 13 13 S 1.70762 * 110.55886 * 0.41715 * 12 11 10 14 14 C 1.35207 * 123.14698 * 179.97438 * 10 8 7 15 15 C 1.50697 * 125.58498 * 359.96789 * 14 10 8 16 16 C 1.52998 * 117.50031 * 188.74546 * 15 14 10 17 17 C 1.52994 * 117.50091 * 120.08036 * 15 14 10 18 18 C 1.53042 * 109.53420 * 61.36323 * 5 4 2 19 19 C 1.53196 * 109.31441 * 298.63976 * 18 5 4 20 20 N 1.46917 * 109.70446 * 120.35880 * 2 1 3 21 21 C 1.36934 * 120.63443 * 353.44134 * 20 2 1 22 22 H 1.08003 * 119.99617 * 41.19713 * 21 20 2 23 23 C 1.38813 * 120.00314 * 221.19900 * 21 20 2 24 24 N 1.31620 * 120.00063 * 214.89293 * 23 21 20 25 25 Si 1.86801 * 119.99848 * 34.89914 * 23 21 20 26 26 H 1.48500 * 109.47147 * 84.62557 * 25 23 21 27 27 H 1.48504 * 109.47009 * 204.62341 * 25 23 21 28 28 H 1.48496 * 109.46923 * 324.62302 * 25 23 21 29 29 H 1.08999 * 109.47284 * 180.28213 * 1 2 3 30 30 H 1.08996 * 109.46938 * 300.28005 * 1 2 3 31 31 H 1.09001 * 109.47234 * 60.28321 * 1 2 3 32 32 H 1.09003 * 109.49830 * 65.47592 * 4 2 1 33 33 H 1.09007 * 109.49761 * 305.38461 * 4 2 1 34 34 H 0.96996 * 120.00427 * 25.06694 * 7 5 4 35 35 H 1.07996 * 124.71380 * 180.22386 * 12 11 10 36 36 H 1.09000 * 115.54692 * 334.40962 * 15 14 10 37 37 H 1.09004 * 117.49623 * 359.97438 * 16 15 14 38 38 H 1.09002 * 117.50179 * 145.01567 * 16 15 14 39 39 H 1.09004 * 117.50204 * 214.97198 * 17 15 14 40 40 H 1.08999 * 117.50465 * 0.02562 * 17 15 14 41 41 H 1.09002 * 109.49937 * 58.58829 * 18 5 4 42 42 H 1.08996 * 109.49709 * 178.68889 * 18 5 4 43 43 H 1.09002 * 109.58930 * 174.42698 * 19 18 5 44 44 H 1.09001 * 109.58104 * 294.84875 * 19 18 5 45 45 H 0.97002 * 119.99820 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7277 -1.2464 5 6 3.5678 -0.8433 -1.1731 6 1 3.9378 -1.3391 -2.0704 7 7 4.1547 0.4957 -1.0780 8 6 5.4173 0.7093 -1.4980 9 8 6.0698 -0.2096 -1.9556 10 6 6.0076 2.0551 -1.4019 11 7 5.3472 3.1090 -0.9149 12 6 6.0004 4.2171 -0.8935 13 16 7.5706 4.0000 -1.5286 14 6 7.2668 2.3405 -1.8033 15 6 8.2424 1.3567 -2.3961 16 6 9.6847 1.8260 -2.5971 17 6 8.7639 1.6412 -3.8060 18 6 3.9604 -1.6607 0.0597 19 6 3.4685 -0.9436 1.3209 20 7 2.0254 -0.6991 1.1935 21 6 1.1586 -1.1144 2.1689 22 1 0.2110 -1.5555 1.8970 23 6 1.4979 -0.9685 3.5070 24 7 1.1200 -1.8740 4.3842 25 14 2.4907 0.5131 4.0626 26 1 1.5767 1.6574 4.3085 27 1 3.2164 0.1813 5.3150 28 1 3.4681 0.8784 3.0060 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3633 0.5182 0.8874 31 1 -0.3634 0.5094 -0.8925 32 1 1.7637 -0.1654 -2.1372 33 1 1.6049 -1.7246 -1.2922 34 1 3.6345 1.2284 -0.7127 35 1 5.6089 5.1548 -0.5278 36 1 8.0864 0.3144 -2.1179 37 1 9.9278 2.8465 -2.3010 38 1 10.4776 1.0923 -2.4517 39 1 8.9516 0.7860 -4.4553 40 1 8.4017 2.5402 -4.3048 41 1 3.5037 -2.6488 0.0017 42 1 5.0449 -1.7624 0.0986 43 1 3.6577 -1.5683 2.1939 44 1 3.9920 0.0064 1.4286 45 1 1.3574 -1.7722 5.3192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947719665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:19 Heat of formation + Delta-G solvation = 57.477949 kcal Electronic energy + Delta-G solvation = -27458.230868 eV Core-core repulsion = 23797.022436 eV Total energy + Delta-G solvation = -3661.208432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69492 -39.11671 -37.65214 -37.36568 -34.33407 -32.28502 -31.55044 -30.73666 -30.10477 -26.69041 -26.10955 -24.76333 -23.08108 -22.67805 -22.32883 -22.12211 -20.60064 -19.90987 -18.85978 -18.26157 -17.01985 -16.37101 -16.06388 -15.49232 -15.34822 -15.04145 -14.68613 -14.48513 -14.38901 -14.08547 -13.84394 -13.57089 -13.17915 -12.96085 -12.40091 -12.39543 -12.22935 -11.93062 -11.89892 -11.74559 -11.44129 -11.31784 -11.19471 -10.91665 -10.86247 -10.61592 -10.38876 -10.23500 -10.03438 -9.93430 -9.71805 -9.68496 -9.54626 -9.38682 -9.08048 -8.66197 -8.31773 -6.66400 -6.06210 -3.35896 0.30580 0.96704 1.38929 1.91980 3.33913 3.42840 3.46366 3.52736 3.59480 3.65427 3.98849 4.24139 4.52847 4.60468 4.69021 4.87869 4.94980 5.00635 5.24572 5.27141 5.29255 5.33975 5.52177 5.54470 5.57143 5.72711 5.76173 5.86521 5.99087 6.03580 6.15399 6.21708 6.33439 6.43338 6.46222 6.48258 6.59214 6.81204 6.90754 6.93817 7.06457 7.13566 7.22057 7.80919 8.06034 8.38647 8.45067 9.03478 9.75202 10.24687 11.09390 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.003600 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.742471 B = 7775.454028 C = 8312.805237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.164 3.836 3 H 0.022 0.978 4 C -0.138 4.138 5 C 0.153 3.847 6 H 0.078 0.922 7 N -0.697 5.697 8 C 0.593 3.407 9 O -0.539 6.539 10 C 0.003 3.997 11 N -0.433 5.433 12 C -0.004 4.004 13 S 0.191 5.809 14 C -0.150 4.150 15 C -0.085 4.085 16 C -0.178 4.178 17 C -0.160 4.160 18 C -0.147 4.147 19 C 0.147 3.853 20 N -0.594 5.594 21 C -0.274 4.274 22 H 0.077 0.923 23 C 0.051 3.949 24 N -0.880 5.880 25 Si 0.841 3.159 26 H -0.289 1.289 27 H -0.298 1.298 28 H -0.261 1.261 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.409 0.591 35 H 0.205 0.795 36 H 0.150 0.850 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.023 0.977 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.964 11.821 -15.575 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 H 0.040 0.960 4 C -0.177 4.177 5 C 0.049 3.951 6 H 0.096 0.904 7 N -0.347 5.347 8 C 0.376 3.624 9 O -0.417 6.417 10 C -0.131 4.131 11 N -0.147 5.147 12 C -0.304 4.304 13 S 0.447 5.553 14 C -0.274 4.274 15 C -0.105 4.105 16 C -0.216 4.216 17 C -0.198 4.198 18 C -0.187 4.187 19 C 0.021 3.979 20 N -0.318 5.318 21 C -0.402 4.402 22 H 0.094 0.906 23 C -0.151 4.151 24 N -0.519 5.519 25 Si 0.668 3.332 26 H -0.216 1.216 27 H -0.225 1.225 28 H -0.185 1.185 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.247 0.753 35 H 0.222 0.778 36 H 0.167 0.833 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.567 11.750 -15.628 24.383 hybrid contribution -0.220 0.591 0.861 1.067 sum 14.347 12.342 -14.767 24.005 Atomic orbital electron populations 1.21751 0.95169 1.01946 1.00230 1.20516 0.93780 0.92961 0.86978 0.96010 1.22338 0.93538 1.02622 0.99214 1.20962 0.93393 0.81948 0.98805 0.90367 1.46040 1.13614 1.12989 1.62093 1.16974 0.82026 0.85284 0.78078 1.90715 1.60890 1.43049 1.47046 1.20445 0.91822 0.95123 1.05735 1.66981 1.34837 0.98218 1.14636 1.28339 0.95223 1.01316 1.05508 1.82711 1.16534 1.01164 1.54891 1.24796 0.98500 0.99227 1.04872 1.20714 0.91412 0.99128 0.99264 1.23173 0.92922 1.02635 1.02872 1.23075 1.02591 1.03713 0.90390 1.22419 1.00037 0.99703 0.96538 1.21223 0.84708 0.96681 0.95254 1.44363 1.02248 1.65342 1.19881 1.18581 1.02403 1.34888 0.84286 0.90577 1.25579 0.96748 0.96880 0.95934 1.70084 1.47223 1.31329 1.03287 0.87396 0.80745 0.87018 0.78053 1.21566 1.22531 1.18533 0.92365 0.91808 0.94309 0.92334 0.90203 0.75346 0.77847 0.83255 0.88734 0.87595 0.87676 0.88706 0.90852 0.92514 0.91660 0.95899 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.08 37.16 0.30 -2.14 16 2 C 0.16 3.16 3.19 -67.60 -0.22 2.94 16 3 H 0.02 0.43 6.64 -51.93 -0.34 0.09 16 4 C -0.14 -2.26 5.07 -26.61 -0.13 -2.40 16 5 C 0.15 2.59 2.78 -67.89 -0.19 2.40 16 6 H 0.08 1.30 7.57 -51.93 -0.39 0.91 16 7 N -0.70 -11.74 4.26 -54.89 -0.23 -11.97 16 8 C 0.59 10.03 7.76 -12.59 -0.10 9.93 16 9 O -0.54 -9.77 13.82 5.24 0.07 -9.69 16 10 C 0.00 0.05 6.70 -84.52 -0.57 -0.52 16 11 N -0.43 -6.09 10.12 -12.36 -0.13 -6.21 16 12 C 0.00 -0.04 12.17 51.43 0.63 0.58 16 13 S 0.19 1.66 21.77 -107.50 -2.34 -0.68 16 14 C -0.15 -1.86 6.04 -35.39 -0.21 -2.07 16 15 C -0.08 -0.97 5.40 -91.78 -0.50 -1.46 16 16 C -0.18 -1.47 10.04 -26.69 -0.27 -1.74 16 17 C -0.16 -1.41 10.24 -26.69 -0.27 -1.68 16 18 C -0.15 -2.78 5.77 -26.61 -0.15 -2.93 16 19 C 0.15 3.27 4.34 -3.71 -0.02 3.25 16 20 N -0.59 -13.75 2.47 -164.78 -0.41 -14.16 16 21 C -0.27 -7.39 8.44 -15.06 -0.13 -7.51 16 22 H 0.08 2.19 6.82 -52.48 -0.36 1.83 16 23 C 0.05 1.45 4.82 -17.43 -0.08 1.37 16 24 N -0.88 -26.41 13.97 55.49 0.78 -25.63 16 25 Si 0.84 21.65 27.40 -169.99 -4.66 16.99 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 28 H -0.26 -6.55 5.24 56.52 0.30 -6.26 16 29 H 0.06 1.11 7.39 -51.93 -0.38 0.72 16 30 H 0.06 1.27 7.71 -51.93 -0.40 0.87 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.41 7.00 6.39 -40.82 -0.26 6.73 16 35 H 0.20 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.15 2.04 6.17 -51.93 -0.32 1.72 16 37 H 0.09 0.68 7.28 -51.93 -0.38 0.30 16 38 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.59 7.02 -51.93 -0.36 1.23 16 44 H 0.02 0.53 6.30 -51.93 -0.33 0.20 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -31.83 364.90 -9.90 -41.73 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.58 Total: 6.10 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.91 Total: -1.97 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.01 Total: -57.98 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.66 Total: 16.99 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.34 Total: -0.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.83 -9.90 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947719665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.205 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds