Wall clock time and date at job start Tue Mar 31 2020 19:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.58288 * 2 1 4 4 C 1.53191 * 109.58694 * 239.71928 * 2 1 3 5 5 C 1.53040 * 109.31681 * 185.43164 * 4 2 1 6 6 H 1.08992 * 109.44890 * 181.37554 * 5 4 2 7 7 N 1.46498 * 109.45653 * 301.34730 * 5 4 2 8 8 C 1.34774 * 119.99630 * 205.06413 * 7 5 4 9 9 O 1.21639 * 120.00386 * 359.97438 * 8 7 5 10 10 C 1.47265 * 120.00345 * 180.02562 * 8 7 5 11 11 N 1.33566 * 123.13930 * 359.70681 * 10 8 7 12 12 C 1.28649 * 115.76597 * 179.83330 * 11 10 8 13 13 S 1.70762 * 110.55886 * 0.41715 * 12 11 10 14 14 C 1.35207 * 123.14698 * 179.97438 * 10 8 7 15 15 C 1.50697 * 125.58498 * 359.96789 * 14 10 8 16 16 C 1.52998 * 117.50031 * 188.74546 * 15 14 10 17 17 C 1.52994 * 117.50091 * 120.08036 * 15 14 10 18 18 C 1.53042 * 109.53420 * 61.36323 * 5 4 2 19 19 C 1.53196 * 109.31441 * 298.63976 * 18 5 4 20 20 N 1.46917 * 109.70446 * 120.35880 * 2 1 3 21 21 C 1.36934 * 120.63443 * 353.44134 * 20 2 1 22 22 H 1.08003 * 119.99617 * 41.19713 * 21 20 2 23 23 C 1.38813 * 120.00314 * 221.19900 * 21 20 2 24 24 N 1.31620 * 120.00063 * 214.89293 * 23 21 20 25 25 Si 1.86801 * 119.99848 * 34.89914 * 23 21 20 26 26 H 1.48500 * 109.47147 * 84.62557 * 25 23 21 27 27 H 1.48504 * 109.47009 * 204.62341 * 25 23 21 28 28 H 1.48496 * 109.46923 * 324.62302 * 25 23 21 29 29 H 1.08999 * 109.47284 * 180.28213 * 1 2 3 30 30 H 1.08996 * 109.46938 * 300.28005 * 1 2 3 31 31 H 1.09001 * 109.47234 * 60.28321 * 1 2 3 32 32 H 1.09003 * 109.49830 * 65.47592 * 4 2 1 33 33 H 1.09007 * 109.49761 * 305.38461 * 4 2 1 34 34 H 0.96996 * 120.00427 * 25.06694 * 7 5 4 35 35 H 1.07996 * 124.71380 * 180.22386 * 12 11 10 36 36 H 1.09000 * 115.54692 * 334.40962 * 15 14 10 37 37 H 1.09004 * 117.49623 * 359.97438 * 16 15 14 38 38 H 1.09002 * 117.50179 * 145.01567 * 16 15 14 39 39 H 1.09004 * 117.50204 * 214.97198 * 17 15 14 40 40 H 1.08999 * 117.50465 * 0.02562 * 17 15 14 41 41 H 1.09002 * 109.49937 * 58.58829 * 18 5 4 42 42 H 1.08996 * 109.49709 * 178.68889 * 18 5 4 43 43 H 1.09002 * 109.58930 * 174.42698 * 19 18 5 44 44 H 1.09001 * 109.58104 * 294.84875 * 19 18 5 45 45 H 0.97002 * 119.99820 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7277 -1.2464 5 6 3.5678 -0.8433 -1.1731 6 1 3.9378 -1.3391 -2.0704 7 7 4.1547 0.4957 -1.0780 8 6 5.4173 0.7093 -1.4980 9 8 6.0698 -0.2096 -1.9556 10 6 6.0076 2.0551 -1.4019 11 7 5.3472 3.1090 -0.9149 12 6 6.0004 4.2171 -0.8935 13 16 7.5706 4.0000 -1.5286 14 6 7.2668 2.3405 -1.8033 15 6 8.2424 1.3567 -2.3961 16 6 9.6847 1.8260 -2.5971 17 6 8.7639 1.6412 -3.8060 18 6 3.9604 -1.6607 0.0597 19 6 3.4685 -0.9436 1.3209 20 7 2.0254 -0.6991 1.1935 21 6 1.1586 -1.1144 2.1689 22 1 0.2110 -1.5555 1.8970 23 6 1.4979 -0.9685 3.5070 24 7 1.1200 -1.8740 4.3842 25 14 2.4907 0.5131 4.0626 26 1 1.5767 1.6574 4.3085 27 1 3.2164 0.1813 5.3150 28 1 3.4681 0.8784 3.0060 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3633 0.5182 0.8874 31 1 -0.3634 0.5094 -0.8925 32 1 1.7637 -0.1654 -2.1372 33 1 1.6049 -1.7246 -1.2922 34 1 3.6345 1.2284 -0.7127 35 1 5.6089 5.1548 -0.5278 36 1 8.0864 0.3144 -2.1179 37 1 9.9278 2.8465 -2.3010 38 1 10.4776 1.0923 -2.4517 39 1 8.9516 0.7860 -4.4553 40 1 8.4017 2.5402 -4.3048 41 1 3.5037 -2.6488 0.0017 42 1 5.0449 -1.7624 0.0986 43 1 3.6577 -1.5683 2.1939 44 1 3.9920 0.0064 1.4286 45 1 1.3574 -1.7722 5.3192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947719665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:19 Heat of formation + Delta-G solvation = 37.402591 kcal Electronic energy + Delta-G solvation = -27459.101401 eV Core-core repulsion = 23797.022436 eV Total energy + Delta-G solvation = -3662.078965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.77051 -40.38506 -38.98770 -38.19481 -35.93412 -34.14585 -33.16837 -32.08388 -31.33441 -28.22340 -27.17851 -26.52609 -24.26659 -23.87103 -23.34477 -23.02836 -22.19774 -21.07453 -20.39436 -19.19006 -18.43156 -17.81327 -17.21470 -16.93331 -16.60588 -16.42552 -16.26379 -15.64118 -15.43768 -15.24921 -15.13404 -15.07018 -14.67491 -14.48507 -14.34538 -13.71800 -13.36991 -13.18580 -13.08752 -13.03702 -12.76763 -12.58898 -12.52216 -12.49258 -12.22221 -12.09283 -11.90746 -11.68747 -11.66247 -11.53974 -11.13894 -10.96127 -10.73084 -10.48895 -10.27966 -10.16966 -9.78953 -8.61674 -8.26208 -5.50802 -0.54376 0.19855 0.58120 0.93324 1.33562 1.40305 1.49333 2.19940 2.30634 2.46285 2.89680 2.93381 3.12592 3.39545 3.43479 3.74755 3.84424 3.98564 4.01629 4.05651 4.12730 4.17097 4.30208 4.50244 4.53891 4.57143 4.62987 4.67016 4.79725 4.87213 4.92629 4.95000 4.98664 5.03846 5.06570 5.11117 5.14273 5.18667 5.22551 5.48111 5.53043 5.60185 5.94517 6.28448 6.29016 6.60579 7.02100 7.13648 7.66978 8.18483 8.93781 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.003600 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.742471 B = 7775.454028 C = 8312.805237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.158 3.842 3 H 0.029 0.971 4 C -0.125 4.125 5 C 0.159 3.841 6 H 0.087 0.913 7 N -0.698 5.698 8 C 0.588 3.412 9 O -0.560 6.560 10 C -0.033 4.033 11 N -0.470 5.470 12 C -0.011 4.011 13 S 0.281 5.719 14 C -0.163 4.163 15 C -0.117 4.117 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.137 4.137 19 C 0.152 3.848 20 N -0.603 5.603 21 C -0.253 4.253 22 H 0.053 0.947 23 C 0.002 3.998 24 N -0.926 5.926 25 Si 0.896 3.104 26 H -0.289 1.289 27 H -0.305 1.305 28 H -0.253 1.253 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.408 0.592 35 H 0.238 0.762 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.017 0.983 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.758 14.629 -17.851 27.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.053 3.947 3 H 0.047 0.953 4 C -0.164 4.164 5 C 0.054 3.946 6 H 0.105 0.895 7 N -0.349 5.349 8 C 0.373 3.627 9 O -0.440 6.440 10 C -0.167 4.167 11 N -0.184 5.184 12 C -0.310 4.310 13 S 0.539 5.461 14 C -0.288 4.288 15 C -0.137 4.137 16 C -0.195 4.195 17 C -0.190 4.190 18 C -0.177 4.177 19 C 0.026 3.974 20 N -0.329 5.329 21 C -0.383 4.383 22 H 0.070 0.930 23 C -0.197 4.197 24 N -0.568 5.568 25 Si 0.724 3.276 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.178 1.178 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.245 0.755 35 H 0.254 0.746 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.035 0.965 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.379 14.597 -17.939 28.340 hybrid contribution -0.694 -0.235 1.472 1.644 sum 15.685 14.361 -16.468 26.897 Atomic orbital electron populations 1.21694 0.94352 1.01372 1.01082 1.20749 0.94519 0.93205 0.86256 0.95307 1.22217 0.92785 1.02667 0.98738 1.20859 0.93842 0.82119 0.97749 0.89539 1.46010 1.13895 1.12553 1.62424 1.17376 0.81712 0.86289 0.77339 1.90695 1.61267 1.44119 1.47947 1.20239 0.93068 0.94660 1.08770 1.66953 1.36209 0.99002 1.16239 1.28968 0.96229 1.01452 1.04388 1.82329 1.14207 0.97132 1.52472 1.25134 0.97890 1.01952 1.03776 1.20612 0.93577 0.97850 1.01702 1.23298 0.91299 1.03591 1.01324 1.23179 1.01843 1.04273 0.89656 1.22274 0.99786 0.99595 0.96003 1.21080 0.84356 0.96118 0.95805 1.44484 1.02080 1.66025 1.20270 1.18524 1.01715 1.33026 0.85015 0.92965 1.26026 0.98676 0.98663 0.96321 1.70163 1.50178 1.32981 1.03513 0.86512 0.79556 0.84145 0.77415 1.21671 1.23242 1.17796 0.93611 0.94062 0.90368 0.89224 0.90249 0.75464 0.74602 0.86310 0.87167 0.86485 0.87191 0.87691 0.91031 0.92621 0.94544 0.96494 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 8.08 71.98 0.58 -3.93 16 2 C 0.16 5.89 3.19 44.98 0.14 6.03 16 3 H 0.03 1.08 6.64 -2.39 -0.02 1.06 16 4 C -0.12 -3.86 5.07 30.67 0.16 -3.70 16 5 C 0.16 5.22 2.78 45.02 0.13 5.35 16 6 H 0.09 2.77 7.57 -2.39 -0.02 2.75 16 7 N -0.70 -23.06 4.26 -445.82 -1.90 -24.96 16 8 C 0.59 19.83 7.76 86.62 0.67 20.50 16 9 O -0.56 -20.58 13.82 -4.16 -0.06 -20.64 16 10 C -0.03 -0.97 6.70 40.56 0.27 -0.70 16 11 N -0.47 -12.50 10.12 -193.03 -1.95 -14.45 16 12 C -0.01 -0.20 12.17 130.71 1.59 1.39 16 13 S 0.28 3.94 21.77 -56.49 -1.23 2.71 16 14 C -0.16 -3.78 6.04 24.99 0.15 -3.63 16 15 C -0.12 -2.54 5.40 -11.54 -0.06 -2.60 16 16 C -0.16 -2.17 10.04 30.62 0.31 -1.86 16 17 C -0.15 -2.34 10.24 30.62 0.31 -2.03 16 18 C -0.14 -5.18 5.77 30.67 0.18 -5.00 16 19 C 0.15 6.83 4.34 86.36 0.37 7.20 16 20 N -0.60 -28.04 2.47 -675.24 -1.67 -29.71 16 21 C -0.25 -13.97 8.44 84.03 0.71 -13.26 16 22 H 0.05 3.11 6.82 -2.91 -0.02 3.09 16 23 C 0.00 0.11 4.82 84.86 0.41 0.52 16 24 N -0.93 -57.39 13.97 21.65 0.30 -57.09 16 25 Si 0.90 45.90 27.40 68.60 1.88 47.78 16 26 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 27 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 28 H -0.25 -12.53 5.24 99.48 0.52 -12.01 16 29 H 0.04 1.71 7.39 -2.39 -0.02 1.69 16 30 H 0.04 1.62 7.71 -2.39 -0.02 1.60 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.41 13.59 6.39 -92.71 -0.59 12.99 16 35 H 0.24 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.12 3.33 6.17 -2.39 -0.01 3.31 16 37 H 0.11 1.15 7.28 -2.39 -0.02 1.13 16 38 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.04 1.82 7.02 -2.39 -0.02 1.80 16 44 H 0.02 0.79 6.30 -2.39 -0.02 0.78 16 45 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -71.81 364.90 1.54 -70.28 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.24 Total: 21.79 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.92 Total: 4.29 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -5.22 Total: -126.21 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.78 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.23 Total: 2.71 kcal Total: -71.81 1.54 -70.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947719665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.680 kcal (2) G-P(sol) polarization free energy of solvation -71.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds