Wall clock time and date at job start Tue Mar 31 2020 19:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.69782 * 2 1 4 4 C 1.53190 * 109.58525 * 239.64833 * 2 1 3 5 5 C 1.53046 * 109.31557 * 185.57602 * 4 2 1 6 6 H 1.09004 * 109.44600 * 301.35393 * 5 4 2 7 7 N 1.46494 * 109.46338 * 181.38729 * 5 4 2 8 8 C 1.34773 * 120.00289 * 154.93395 * 7 5 4 9 9 O 1.21636 * 119.99803 * 359.97438 * 8 7 5 10 10 C 1.47263 * 120.00336 * 179.97438 * 8 7 5 11 11 N 1.33564 * 123.14179 * 359.97438 * 10 8 7 12 12 C 1.28646 * 115.76713 * 180.02562 * 11 10 8 13 13 S 1.70772 * 110.56064 * 359.75567 * 12 11 10 14 14 C 1.35213 * 123.14456 * 179.97438 * 10 8 7 15 15 C 1.50695 * 125.58448 * 359.97438 * 14 10 8 16 16 C 1.52999 * 117.50133 * 171.25303 * 15 14 10 17 17 C 1.52997 * 117.49898 * 239.91768 * 15 14 10 18 18 C 1.53037 * 109.53778 * 61.35907 * 5 4 2 19 19 C 1.53195 * 109.31542 * 298.64307 * 18 5 4 20 20 N 1.46920 * 108.77606 * 54.63161 * 19 18 5 21 21 C 1.36933 * 120.63066 * 126.41826 * 20 19 18 22 22 H 1.08006 * 120.00045 * 221.21936 * 21 20 19 23 23 C 1.38818 * 120.00190 * 41.21465 * 21 20 19 24 24 N 1.31622 * 119.99963 * 214.83431 * 23 21 20 25 25 Si 1.86802 * 119.99686 * 34.83395 * 23 21 20 26 26 H 1.48502 * 109.46854 * 84.63082 * 25 23 21 27 27 H 1.48496 * 109.46759 * 204.62412 * 25 23 21 28 28 H 1.48498 * 109.47359 * 324.62656 * 25 23 21 29 29 H 1.09005 * 109.47195 * 299.64223 * 1 2 3 30 30 H 1.08998 * 109.47574 * 59.64701 * 1 2 3 31 31 H 1.09005 * 109.47100 * 179.64684 * 1 2 3 32 32 H 1.08998 * 109.50021 * 65.62444 * 4 2 1 33 33 H 1.09005 * 109.49983 * 305.52749 * 4 2 1 34 34 H 0.97007 * 119.99836 * 334.92737 * 7 5 4 35 35 H 1.08004 * 124.71740 * 180.02562 * 12 11 10 36 36 H 1.09003 * 115.55198 * 25.58366 * 15 14 10 37 37 H 1.08994 * 117.50157 * 215.00022 * 16 15 14 38 38 H 1.08998 * 117.49058 * 0.02562 * 16 15 14 39 39 H 1.08999 * 117.50132 * 359.97270 * 17 15 14 40 40 H 1.08996 * 117.50199 * 144.97409 * 17 15 14 41 41 H 1.09006 * 109.49589 * 58.58676 * 18 5 4 42 42 H 1.09002 * 109.50127 * 178.65408 * 18 5 4 43 43 H 1.08999 * 109.58664 * 174.42301 * 19 18 5 44 44 H 1.09002 * 109.58177 * 294.70151 * 19 18 5 45 45 H 0.96998 * 119.99290 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8479 -1.1703 6 1 4.0059 0.1475 -1.0993 7 7 4.0651 -1.5155 -2.3756 8 6 5.3289 -1.3009 -2.7918 9 8 6.0561 -0.5525 -2.1669 10 6 5.8293 -1.9725 -4.0030 11 7 5.0862 -2.8060 -4.7357 12 6 5.6663 -3.3143 -5.7653 13 16 7.2705 -2.7430 -5.8929 14 6 7.0841 -1.8029 -4.4774 15 6 8.1429 -0.9246 -3.8622 16 6 9.5605 -1.0241 -4.4293 17 6 8.7044 0.2113 -4.7197 18 6 3.9570 -1.6656 0.0633 19 6 3.4651 -0.9469 1.3236 20 7 2.0226 -0.6996 1.1944 21 6 1.1539 -1.1127 2.1689 22 1 0.2060 -1.5527 1.8961 23 6 1.4915 -0.9661 3.5074 24 7 1.1099 -1.8696 4.3851 25 14 2.4872 0.5137 4.0627 26 1 1.5758 1.6606 4.3059 27 1 3.2101 0.1814 5.3166 28 1 3.4672 0.8752 3.0072 29 1 -0.3634 0.5083 0.8932 30 1 -0.3634 0.5193 -0.8868 31 1 -0.3633 -1.0277 -0.0063 32 1 1.7659 -0.1667 -2.1368 33 1 1.6029 -1.7253 -1.2914 34 1 3.4850 -2.1122 -2.8741 35 1 5.2018 -4.0029 -6.4556 36 1 8.0406 -0.7441 -2.7921 37 1 10.3906 -0.9089 -3.7325 38 1 9.7269 -1.7245 -5.2477 39 1 8.3082 0.3231 -5.7290 40 1 8.9710 1.1392 -4.2139 41 1 3.4983 -2.6527 0.0051 42 1 5.0412 -1.7700 0.1032 43 1 3.6519 -1.5717 2.1970 44 1 3.9921 0.0009 1.4329 45 1 1.3462 -1.7672 5.3203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947719666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:22 Heat of formation + Delta-G solvation = 54.677445 kcal Electronic energy + Delta-G solvation = -26796.206499 eV Core-core repulsion = 23134.876628 eV Total energy + Delta-G solvation = -3661.329871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.74623 -39.01570 -37.69278 -37.44009 -34.62153 -32.34835 -31.61144 -30.79794 -30.03612 -26.77006 -26.15947 -24.56779 -23.02755 -22.70112 -22.37223 -22.10159 -20.52368 -19.99901 -19.17168 -18.37284 -17.06944 -16.44047 -16.01178 -15.68176 -15.49026 -15.02401 -14.73429 -14.47239 -14.45241 -14.07951 -13.81544 -13.52123 -13.25592 -12.98480 -12.61901 -12.40066 -12.28932 -12.00949 -11.93375 -11.67440 -11.38248 -11.24919 -11.00285 -10.94292 -10.90034 -10.56571 -10.37691 -10.23714 -10.13115 -9.98558 -9.94481 -9.68314 -9.63297 -9.41157 -9.15548 -8.69458 -8.32340 -6.67976 -6.05307 -3.35437 0.21620 0.87301 1.29990 1.81597 3.26969 3.34498 3.44804 3.54836 3.60153 3.61364 3.88520 4.17756 4.47678 4.61656 4.64634 4.77956 4.93029 4.95306 5.21068 5.25440 5.27166 5.29831 5.48194 5.51315 5.63293 5.70819 5.72906 5.87060 5.94998 6.08049 6.17487 6.24676 6.30806 6.36135 6.48044 6.52553 6.60269 6.77880 6.90283 6.94271 7.06210 7.10830 7.15746 7.71133 8.06770 8.30884 8.45786 9.03838 9.75675 10.25023 11.10219 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.002809 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.230828 B = 9964.632654 C =10658.749798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.168 3.832 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.083 0.917 7 N -0.704 5.704 8 C 0.592 3.408 9 O -0.532 6.532 10 C 0.001 3.999 11 N -0.435 5.435 12 C -0.007 4.007 13 S 0.194 5.806 14 C -0.148 4.148 15 C -0.087 4.087 16 C -0.178 4.178 17 C -0.159 4.159 18 C -0.142 4.142 19 C 0.147 3.853 20 N -0.595 5.595 21 C -0.275 4.275 22 H 0.077 0.923 23 C 0.050 3.950 24 N -0.881 5.881 25 Si 0.841 3.159 26 H -0.288 1.288 27 H -0.297 1.297 28 H -0.259 1.259 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.405 0.595 35 H 0.205 0.795 36 H 0.151 0.849 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.026 0.974 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.520 -1.226 -23.996 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.062 3.938 3 H 0.046 0.954 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.101 0.899 7 N -0.354 5.354 8 C 0.375 3.625 9 O -0.410 6.410 10 C -0.133 4.133 11 N -0.149 5.149 12 C -0.306 4.306 13 S 0.450 5.550 14 C -0.272 4.272 15 C -0.108 4.108 16 C -0.215 4.215 17 C -0.197 4.197 18 C -0.182 4.182 19 C 0.021 3.979 20 N -0.320 5.320 21 C -0.403 4.403 22 H 0.094 0.906 23 C -0.152 4.152 24 N -0.519 5.519 25 Si 0.668 3.332 26 H -0.215 1.215 27 H -0.224 1.224 28 H -0.184 1.184 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.240 0.760 35 H 0.222 0.778 36 H 0.168 0.832 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.148 -1.121 -23.941 27.832 hybrid contribution -0.206 0.753 0.906 1.196 sum 13.942 -0.367 -23.035 26.929 Atomic orbital electron populations 1.21751 0.95082 1.01848 1.00348 1.20480 0.93713 0.93264 0.86355 0.95407 1.22358 0.93346 1.02062 0.99594 1.21062 0.94579 0.96591 0.83062 0.89915 1.46114 1.12743 1.47916 1.28578 1.16998 0.82398 0.80855 0.82240 1.90750 1.56287 1.37458 1.56489 1.20452 0.90944 1.01867 1.00028 1.66964 1.34897 1.08353 1.04656 1.28320 0.96088 1.05734 1.00487 1.82764 1.14621 1.36660 1.20922 1.24825 0.98697 1.03464 1.00232 1.20737 0.90135 0.98763 1.01121 1.23173 0.93712 1.01194 1.03456 1.23083 1.02622 0.93457 1.00576 1.22438 0.99893 0.99970 0.95916 1.21252 0.84739 0.96832 0.95051 1.44411 1.02311 1.65275 1.19971 1.18580 1.02311 1.35056 0.84309 0.90588 1.25591 0.96808 0.96918 0.95923 1.70085 1.47218 1.31383 1.03261 0.87385 0.80800 0.86871 0.78119 1.21522 1.22412 1.18397 0.91656 0.94298 0.92465 0.92383 0.91358 0.76001 0.77843 0.83207 0.87540 0.88731 0.88685 0.87593 0.91797 0.92598 0.91275 0.95580 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.07 37.16 0.30 -2.15 16 2 C 0.17 3.32 3.50 -67.60 -0.24 3.09 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.23 4.84 -26.61 -0.13 -2.36 16 5 C 0.15 2.58 2.42 -67.89 -0.16 2.42 16 6 H 0.08 1.54 7.57 -51.93 -0.39 1.15 16 7 N -0.70 -10.74 5.07 -54.89 -0.28 -11.02 16 8 C 0.59 9.39 7.76 -12.59 -0.10 9.29 16 9 O -0.53 -9.60 13.82 5.25 0.07 -9.53 16 10 C 0.00 0.02 6.70 -84.52 -0.57 -0.55 16 11 N -0.43 -5.14 10.12 -12.36 -0.13 -5.27 16 12 C -0.01 -0.06 12.17 51.43 0.63 0.57 16 13 S 0.19 1.43 21.77 -107.50 -2.34 -0.91 16 14 C -0.15 -1.67 6.04 -35.39 -0.21 -1.89 16 15 C -0.09 -0.95 5.40 -91.78 -0.50 -1.44 16 16 C -0.18 -1.37 10.04 -26.69 -0.27 -1.64 16 17 C -0.16 -1.36 10.24 -26.69 -0.27 -1.63 16 18 C -0.14 -2.71 5.65 -26.61 -0.15 -2.86 16 19 C 0.15 3.30 4.59 -3.71 -0.02 3.28 16 20 N -0.60 -13.99 2.47 -164.78 -0.41 -14.39 16 21 C -0.27 -7.45 8.42 -15.06 -0.13 -7.58 16 22 H 0.08 2.20 6.84 -52.48 -0.36 1.84 16 23 C 0.05 1.43 4.82 -17.43 -0.08 1.34 16 24 N -0.88 -26.43 13.97 55.49 0.78 -25.66 16 25 Si 0.84 21.59 27.40 -169.99 -4.66 16.94 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 28 H -0.26 -6.46 5.24 56.52 0.30 -6.16 16 29 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.09 7.42 -51.93 -0.39 0.71 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.40 5.59 8.12 -40.82 -0.33 5.26 16 35 H 0.21 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.15 1.99 6.16 -51.93 -0.32 1.67 16 37 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.62 7.28 -51.93 -0.38 0.24 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.67 7.02 -51.93 -0.36 1.30 16 44 H 0.03 0.60 6.70 -51.93 -0.35 0.25 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -31.97 369.17 -10.04 -42.01 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.75 Total: 4.38 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.90 Total: -2.11 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.03 Total: -56.33 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.66 Total: 16.94 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.34 Total: -0.91 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.97 -10.04 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947719666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.683 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds