Wall clock time and date at job start Tue Mar 31 2020 19:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.57978 * 2 1 4 4 C 1.53189 * 109.58886 * 120.42465 * 2 1 3 5 5 C 1.53043 * 109.31084 * 174.42468 * 4 2 1 6 6 H 1.08993 * 109.46115 * 58.65924 * 5 4 2 7 7 N 1.46501 * 109.45692 * 178.62969 * 5 4 2 8 8 C 1.34777 * 119.99859 * 204.99857 * 7 5 4 9 9 O 1.21688 * 120.00109 * 0.02562 * 8 7 5 10 10 C 1.46687 * 119.99829 * 179.97438 * 8 7 5 11 11 S 1.76206 * 126.13169 * 0.02791 * 10 8 7 12 12 C 1.70951 * 90.31555 * 179.97438 * 11 10 8 13 13 N 1.29433 * 110.38838 * 359.97438 * 12 11 10 14 14 C 1.30939 * 117.36263 * 359.72975 * 13 12 11 15 15 C 1.50700 * 122.90140 * 180.30540 * 14 13 12 16 16 C 1.53004 * 117.49977 * 8.93855 * 15 14 13 17 17 C 1.53008 * 117.49981 * 300.27985 * 15 14 13 18 18 C 1.53070 * 109.66102 * 298.69924 * 5 4 2 19 19 C 1.53190 * 109.29221 * 61.15518 * 18 5 4 20 20 N 1.46925 * 108.89347 * 305.57567 * 19 18 5 21 21 C 1.36941 * 120.63294 * 233.51171 * 20 19 18 22 22 H 1.08001 * 119.99264 * 150.16293 * 21 20 19 23 23 C 1.38806 * 120.00166 * 330.16814 * 21 20 19 24 24 N 1.31624 * 120.00191 * 344.49933 * 23 21 20 25 25 Si 1.86800 * 120.00146 * 164.49608 * 23 21 20 26 26 H 1.48503 * 109.47195 * 89.99708 * 25 23 21 27 27 H 1.48498 * 109.47355 * 210.00264 * 25 23 21 28 28 H 1.48504 * 109.46850 * 330.00278 * 25 23 21 29 29 H 1.09012 * 109.46617 * 180.28290 * 1 2 3 30 30 H 1.08994 * 109.47116 * 300.27725 * 1 2 3 31 31 H 1.08991 * 109.47215 * 60.28883 * 1 2 3 32 32 H 1.09001 * 109.50253 * 294.37740 * 4 2 1 33 33 H 1.09000 * 109.49836 * 54.47728 * 4 2 1 34 34 H 0.97002 * 120.00064 * 25.00437 * 7 5 4 35 35 H 1.08002 * 124.80882 * 180.02562 * 12 11 10 36 36 H 1.08996 * 115.55189 * 154.61513 * 15 14 13 37 37 H 1.09000 * 117.49910 * 0.02562 * 16 15 14 38 38 H 1.09006 * 117.49506 * 145.02364 * 16 15 14 39 39 H 1.08995 * 117.49733 * 214.98119 * 17 15 14 40 40 H 1.09002 * 117.49594 * 0.02562 * 17 15 14 41 41 H 1.08997 * 109.39344 * 301.28044 * 18 5 4 42 42 H 1.08998 * 109.62414 * 181.16823 * 18 5 4 43 43 H 1.09000 * 109.58931 * 185.72246 * 19 18 5 44 44 H 1.08997 * 109.58704 * 65.43588 * 19 18 5 45 45 H 0.96995 * 120.00379 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5676 -0.8493 1.1690 6 1 4.0061 0.1461 1.0995 7 7 4.0653 -1.5188 2.3733 8 6 5.3295 -1.3058 2.7890 9 8 6.0574 -0.5570 2.1643 10 6 5.8276 -1.9758 3.9951 11 16 4.9183 -3.0858 5.0177 12 6 6.2765 -3.2728 6.0388 13 7 7.2664 -2.5590 5.6077 14 6 7.0733 -1.8572 4.5193 15 6 8.1408 -0.9889 3.9049 16 6 9.5567 -1.1009 4.4739 17 6 8.7116 0.1424 4.7625 18 6 3.9603 -1.6639 -0.0660 19 6 3.4651 -0.9451 -1.3249 20 7 2.0226 -0.6980 -1.1953 21 6 1.1538 -1.1099 -2.1704 22 1 0.1399 -1.3776 -1.9121 23 6 1.5763 -1.1835 -3.4906 24 7 2.6871 -0.5821 -3.8606 25 14 0.5686 -2.1363 -4.7420 26 1 -0.4253 -1.2296 -5.3709 27 1 1.4688 -2.6856 -5.7876 28 1 -0.1389 -3.2511 -4.0624 29 1 -0.3633 -1.0278 0.0051 30 1 -0.3633 0.5181 0.8874 31 1 -0.3633 0.5093 -0.8925 32 1 1.7661 -0.1695 2.1366 33 1 1.6031 -1.7269 1.2892 34 1 3.4849 -2.1155 2.8714 35 1 6.3050 -3.8987 6.9185 36 1 8.0414 -0.8079 2.8347 37 1 9.7161 -1.8029 5.2923 38 1 10.3887 -0.9932 3.7779 39 1 8.9879 1.0673 4.2564 40 1 8.3152 0.2583 5.7713 41 1 3.5039 -2.6520 -0.0079 42 1 5.0447 -1.7654 -0.1079 43 1 3.6519 -1.5688 -2.1991 44 1 3.9901 0.0039 -1.4342 45 1 2.9822 -0.6332 -4.7832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947792286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:53 Heat of formation + Delta-G solvation = 55.435866 kcal Electronic energy + Delta-G solvation = -26711.225874 eV Core-core repulsion = 23049.928890 eV Total energy + Delta-G solvation = -3661.296983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.67875 -39.39864 -37.59761 -36.60289 -34.63832 -32.46864 -31.67225 -30.69869 -29.42251 -26.62564 -26.19377 -24.78188 -23.22912 -22.44761 -22.30751 -21.67713 -20.32808 -19.88370 -19.00340 -18.20660 -17.08007 -16.36088 -16.02095 -15.56826 -15.37379 -15.08675 -14.65749 -14.50682 -14.20209 -13.94243 -13.80672 -13.62210 -13.30549 -12.83057 -12.70681 -12.51208 -11.79540 -11.61977 -11.61540 -11.24917 -11.12427 -10.97313 -10.92171 -10.89413 -10.65886 -10.51961 -10.34761 -10.23291 -10.16261 -10.06058 -9.82639 -9.78800 -9.75264 -9.39380 -8.99263 -8.74875 -8.43381 -6.64122 -5.77765 -3.22057 0.00413 0.91651 1.28545 2.19543 3.11349 3.18355 3.37159 3.44479 3.45759 3.76222 3.93928 4.47573 4.48666 4.68866 4.82442 4.92623 5.02903 5.24099 5.28371 5.35389 5.41881 5.55145 5.55454 5.67529 5.74184 5.87140 5.96192 6.04564 6.13009 6.13615 6.23948 6.29867 6.37730 6.40309 6.48142 6.61269 6.76901 6.83587 7.01409 7.08387 7.29736 7.36594 7.56395 7.68183 7.82264 8.21982 8.46789 9.21932 9.85476 10.42821 11.31039 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.002749 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.557524 B =10183.131825 C =10730.139942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.152 3.848 6 H 0.085 0.915 7 N -0.717 5.717 8 C 0.593 3.407 9 O -0.518 6.518 10 C -0.280 4.280 11 S 0.160 5.840 12 C 0.032 3.968 13 N -0.471 5.471 14 C 0.170 3.830 15 C -0.097 4.097 16 C -0.164 4.164 17 C -0.157 4.157 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.587 5.587 21 C -0.252 4.252 22 H 0.069 0.931 23 C 0.004 3.996 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.280 1.280 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.392 0.608 35 H 0.206 0.794 36 H 0.145 0.855 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.021 0.979 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.143 -4.473 20.949 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.049 3.951 6 H 0.103 0.897 7 N -0.367 5.367 8 C 0.377 3.623 9 O -0.396 6.396 10 C -0.404 4.404 11 S 0.415 5.585 12 C -0.263 4.263 13 N -0.185 5.185 14 C 0.033 3.967 15 C -0.117 4.117 16 C -0.201 4.201 17 C -0.195 4.195 18 C -0.187 4.187 19 C 0.049 3.951 20 N -0.311 5.311 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.195 4.195 24 N -0.545 5.545 25 Si 0.729 3.271 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.205 1.205 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.225 0.775 35 H 0.222 0.778 36 H 0.163 0.837 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.039 0.961 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.149 -4.398 20.650 21.990 hybrid contribution -0.155 -0.494 -0.626 0.812 sum 5.994 -4.892 20.024 21.467 Atomic orbital electron populations 1.21794 0.95725 1.01389 1.00390 1.20351 0.93110 0.93573 0.86549 0.95485 1.22393 0.93467 1.01743 0.99834 1.21127 0.94409 0.96806 0.82764 0.89712 1.46262 1.12400 1.48482 1.29520 1.16661 0.82347 0.81110 0.82192 1.90797 1.55877 1.36824 1.56060 1.25595 0.99160 1.10301 1.05377 1.83956 1.17393 1.38536 1.18628 1.28649 0.91724 1.01804 1.04170 1.65967 1.30908 1.08704 1.12896 1.19742 0.92334 0.94924 0.89686 1.20927 0.91147 0.99381 1.00280 1.22999 0.92845 1.00750 1.03535 1.22926 1.03121 0.93036 1.00371 1.22589 0.99834 0.99615 0.96697 1.20723 0.83274 0.97313 0.93748 1.44161 1.02968 1.64993 1.18952 1.19136 0.95173 1.37837 0.86053 0.91301 1.25109 0.97864 0.99521 0.97022 1.70019 1.24054 1.43735 1.16735 0.86349 0.79407 0.79972 0.81330 1.21423 1.21623 1.20528 0.92792 0.94304 0.91787 0.92606 0.91749 0.77472 0.77790 0.83741 0.87909 0.88395 0.88055 0.88961 0.92651 0.92744 0.89357 0.96069 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.95 37.16 0.30 -2.15 16 2 C 0.17 3.43 3.50 -67.60 -0.24 3.20 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.21 4.84 -26.61 -0.13 -2.34 16 5 C 0.15 2.61 2.41 -67.87 -0.16 2.45 16 6 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 7 N -0.72 -10.32 5.07 -55.06 -0.28 -10.60 16 8 C 0.59 9.15 7.74 -12.85 -0.10 9.05 16 9 O -0.52 -9.56 13.99 5.20 0.07 -9.49 16 10 C -0.28 -3.61 6.48 -37.09 -0.24 -3.85 16 11 S 0.16 1.38 22.35 -107.50 -2.40 -1.02 16 12 C 0.03 0.26 12.22 51.75 0.63 0.90 16 13 N -0.47 -5.35 9.81 -11.53 -0.11 -5.46 16 14 C 0.17 2.20 6.41 -83.89 -0.54 1.67 16 15 C -0.10 -1.24 5.43 -91.77 -0.50 -1.74 16 16 C -0.16 -1.71 10.09 -26.69 -0.27 -1.98 16 17 C -0.16 -1.69 10.24 -26.69 -0.27 -1.97 16 18 C -0.15 -2.89 5.66 -26.60 -0.15 -3.04 16 19 C 0.18 4.19 5.28 -3.71 -0.02 4.17 16 20 N -0.59 -14.18 2.99 -164.78 -0.49 -14.67 16 21 C -0.25 -6.64 8.57 -15.06 -0.13 -6.77 16 22 H 0.07 1.76 6.24 -52.49 -0.33 1.43 16 23 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 24 N -0.90 -25.95 11.23 55.49 0.62 -25.33 16 25 Si 0.90 21.37 29.58 -169.99 -5.03 16.34 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 29 H 0.05 0.97 7.44 -51.92 -0.39 0.59 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.39 4.64 7.79 -40.82 -0.32 4.32 16 35 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.15 2.12 6.17 -51.93 -0.32 1.80 16 37 H 0.10 1.07 7.74 -51.93 -0.40 0.67 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 2.36 6.15 -51.93 -0.32 2.04 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -31.11 372.62 -10.56 -41.67 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.65 Total: 5.33 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.91 Total: -2.38 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.26 Total: -56.06 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.40 Total: -1.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.11 -10.56 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947792286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.102 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds