Wall clock time and date at job start Tue Mar 31 2020 19:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.57978 * 2 1 4 4 C 1.53189 * 109.58886 * 120.42465 * 2 1 3 5 5 C 1.53043 * 109.31084 * 174.42468 * 4 2 1 6 6 H 1.08993 * 109.46115 * 58.65924 * 5 4 2 7 7 N 1.46501 * 109.45692 * 178.62969 * 5 4 2 8 8 C 1.34777 * 119.99859 * 204.99857 * 7 5 4 9 9 O 1.21688 * 120.00109 * 0.02562 * 8 7 5 10 10 C 1.46687 * 119.99829 * 179.97438 * 8 7 5 11 11 S 1.76206 * 126.13169 * 0.02791 * 10 8 7 12 12 C 1.70951 * 90.31555 * 179.97438 * 11 10 8 13 13 N 1.29433 * 110.38838 * 359.97438 * 12 11 10 14 14 C 1.30939 * 117.36263 * 359.72975 * 13 12 11 15 15 C 1.50700 * 122.90140 * 180.30540 * 14 13 12 16 16 C 1.53004 * 117.49977 * 8.93855 * 15 14 13 17 17 C 1.53008 * 117.49981 * 300.27985 * 15 14 13 18 18 C 1.53070 * 109.66102 * 298.69924 * 5 4 2 19 19 C 1.53190 * 109.29221 * 61.15518 * 18 5 4 20 20 N 1.46925 * 108.89347 * 305.57567 * 19 18 5 21 21 C 1.36941 * 120.63294 * 233.51171 * 20 19 18 22 22 H 1.08001 * 119.99264 * 150.16293 * 21 20 19 23 23 C 1.38806 * 120.00166 * 330.16814 * 21 20 19 24 24 N 1.31624 * 120.00191 * 344.49933 * 23 21 20 25 25 Si 1.86800 * 120.00146 * 164.49608 * 23 21 20 26 26 H 1.48503 * 109.47195 * 89.99708 * 25 23 21 27 27 H 1.48498 * 109.47355 * 210.00264 * 25 23 21 28 28 H 1.48504 * 109.46850 * 330.00278 * 25 23 21 29 29 H 1.09012 * 109.46617 * 180.28290 * 1 2 3 30 30 H 1.08994 * 109.47116 * 300.27725 * 1 2 3 31 31 H 1.08991 * 109.47215 * 60.28883 * 1 2 3 32 32 H 1.09001 * 109.50253 * 294.37740 * 4 2 1 33 33 H 1.09000 * 109.49836 * 54.47728 * 4 2 1 34 34 H 0.97002 * 120.00064 * 25.00437 * 7 5 4 35 35 H 1.08002 * 124.80882 * 180.02562 * 12 11 10 36 36 H 1.08996 * 115.55189 * 154.61513 * 15 14 13 37 37 H 1.09000 * 117.49910 * 0.02562 * 16 15 14 38 38 H 1.09006 * 117.49506 * 145.02364 * 16 15 14 39 39 H 1.08995 * 117.49733 * 214.98119 * 17 15 14 40 40 H 1.09002 * 117.49594 * 0.02562 * 17 15 14 41 41 H 1.08997 * 109.39344 * 301.28044 * 18 5 4 42 42 H 1.08998 * 109.62414 * 181.16823 * 18 5 4 43 43 H 1.09000 * 109.58931 * 185.72246 * 19 18 5 44 44 H 1.08997 * 109.58704 * 65.43588 * 19 18 5 45 45 H 0.96995 * 120.00379 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5676 -0.8493 1.1690 6 1 4.0061 0.1461 1.0995 7 7 4.0653 -1.5188 2.3733 8 6 5.3295 -1.3058 2.7890 9 8 6.0574 -0.5570 2.1643 10 6 5.8276 -1.9758 3.9951 11 16 4.9183 -3.0858 5.0177 12 6 6.2765 -3.2728 6.0388 13 7 7.2664 -2.5590 5.6077 14 6 7.0733 -1.8572 4.5193 15 6 8.1408 -0.9889 3.9049 16 6 9.5567 -1.1009 4.4739 17 6 8.7116 0.1424 4.7625 18 6 3.9603 -1.6639 -0.0660 19 6 3.4651 -0.9451 -1.3249 20 7 2.0226 -0.6980 -1.1953 21 6 1.1538 -1.1099 -2.1704 22 1 0.1399 -1.3776 -1.9121 23 6 1.5763 -1.1835 -3.4906 24 7 2.6871 -0.5821 -3.8606 25 14 0.5686 -2.1363 -4.7420 26 1 -0.4253 -1.2296 -5.3709 27 1 1.4688 -2.6856 -5.7876 28 1 -0.1389 -3.2511 -4.0624 29 1 -0.3633 -1.0278 0.0051 30 1 -0.3633 0.5181 0.8874 31 1 -0.3633 0.5093 -0.8925 32 1 1.7661 -0.1695 2.1366 33 1 1.6031 -1.7269 1.2892 34 1 3.4849 -2.1155 2.8714 35 1 6.3050 -3.8987 6.9185 36 1 8.0414 -0.8079 2.8347 37 1 9.7161 -1.8029 5.2923 38 1 10.3887 -0.9932 3.7779 39 1 8.9879 1.0673 4.2564 40 1 8.3152 0.2583 5.7713 41 1 3.5039 -2.6520 -0.0079 42 1 5.0447 -1.7654 -0.1079 43 1 3.6519 -1.5688 -2.1991 44 1 3.9901 0.0039 -1.4342 45 1 2.9822 -0.6332 -4.7832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947792286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:52 Heat of formation + Delta-G solvation = 35.905639 kcal Electronic energy + Delta-G solvation = -26712.072768 eV Core-core repulsion = 23049.928890 eV Total energy + Delta-G solvation = -3662.143878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.63184 -40.60377 -39.14586 -37.46030 -36.15042 -34.25501 -33.15678 -31.98500 -30.94550 -28.08714 -27.28914 -26.49099 -24.28433 -23.72204 -23.27872 -23.04676 -21.77417 -21.29472 -20.31456 -19.08348 -18.33753 -17.95763 -17.18843 -17.03390 -16.53754 -16.32815 -15.85016 -15.66151 -15.42872 -15.35664 -15.18617 -14.96107 -14.73457 -14.53491 -14.29854 -13.36346 -13.33745 -12.98043 -12.73914 -12.71505 -12.66337 -12.56748 -12.42545 -12.35550 -12.11259 -11.87460 -11.77645 -11.72807 -11.52924 -11.48136 -11.27265 -11.09697 -10.68892 -10.64440 -10.54548 -10.10827 -9.71948 -8.63856 -7.83500 -5.30249 -0.81173 0.15994 0.53270 1.33888 1.47580 1.49387 1.58284 1.97836 2.03085 2.53232 2.95466 3.13600 3.33127 3.55233 3.61138 3.77394 3.89672 3.96310 4.03642 4.10317 4.21980 4.24402 4.37736 4.45784 4.60102 4.69483 4.72357 4.74144 4.78890 4.85387 4.94664 5.02801 5.04866 5.06209 5.14993 5.20274 5.27331 5.37921 5.42913 5.52436 5.55879 5.70541 5.73769 6.37194 6.43884 6.56317 7.07497 7.17586 7.89175 8.42460 9.24111 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.002749 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.557524 B =10183.131825 C =10730.139942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.160 3.840 3 H 0.012 0.988 4 C -0.119 4.119 5 C 0.164 3.836 6 H 0.061 0.939 7 N -0.705 5.705 8 C 0.591 3.409 9 O -0.559 6.559 10 C -0.325 4.325 11 S 0.223 5.777 12 C 0.049 3.951 13 N -0.496 5.496 14 C 0.169 3.831 15 C -0.125 4.125 16 C -0.147 4.147 17 C -0.150 4.150 18 C -0.131 4.131 19 C 0.185 3.815 20 N -0.603 5.603 21 C -0.249 4.249 22 H 0.080 0.920 23 C -0.056 4.056 24 N -0.941 5.941 25 Si 0.963 3.037 26 H -0.286 1.286 27 H -0.299 1.299 28 H -0.266 1.266 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.408 0.592 35 H 0.250 0.750 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.054 0.946 44 H -0.012 1.012 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -6.372 24.539 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.029 0.971 4 C -0.158 4.158 5 C 0.059 3.941 6 H 0.079 0.921 7 N -0.356 5.356 8 C 0.378 3.622 9 O -0.440 6.440 10 C -0.449 4.449 11 S 0.480 5.520 12 C -0.245 4.245 13 N -0.210 5.210 14 C 0.031 3.969 15 C -0.145 4.145 16 C -0.184 4.184 17 C -0.188 4.188 18 C -0.171 4.171 19 C 0.058 3.942 20 N -0.327 5.327 21 C -0.379 4.379 22 H 0.098 0.902 23 C -0.251 4.251 24 N -0.587 5.587 25 Si 0.792 3.208 26 H -0.213 1.213 27 H -0.226 1.226 28 H -0.191 1.191 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.245 0.755 35 H 0.266 0.734 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.006 0.994 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.599 -6.328 24.302 25.530 hybrid contribution 0.328 0.097 -1.623 1.659 sum 4.926 -6.231 22.679 24.030 Atomic orbital electron populations 1.21712 0.93763 1.01767 1.01177 1.20632 0.94799 0.92872 0.86334 0.97056 1.22204 0.92114 1.02419 0.99066 1.20739 0.95207 0.95286 0.82823 0.92101 1.45935 1.12553 1.48566 1.28556 1.17031 0.81976 0.80536 0.82694 1.90781 1.56857 1.38677 1.57654 1.25355 1.00522 1.13045 1.05935 1.83669 1.15855 1.35971 1.16554 1.29497 0.90698 0.99957 1.04354 1.66026 1.32210 1.09956 1.12823 1.19814 0.92228 0.94756 0.90136 1.20849 0.93045 1.01342 0.99290 1.23036 0.91903 1.00233 1.03276 1.22967 1.02647 0.93124 1.00072 1.22320 0.99065 0.99627 0.96068 1.20411 0.83731 0.95442 0.94594 1.44422 1.02586 1.65701 1.19959 1.19533 0.95678 1.36263 0.86457 0.90200 1.25885 0.99120 1.01005 0.99070 1.70199 1.26093 1.45876 1.16547 0.85338 0.77768 0.78884 0.78841 1.21281 1.22569 1.19080 0.92530 0.90410 0.94127 0.89140 0.90454 0.75549 0.73389 0.86532 0.87518 0.87288 0.87562 0.88611 0.91981 0.93662 0.92784 0.99376 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.95 71.98 0.57 -3.72 16 2 C 0.16 6.28 3.50 44.97 0.16 6.43 16 3 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 4 C -0.12 -3.62 4.84 30.67 0.15 -3.47 16 5 C 0.16 5.59 2.41 45.03 0.11 5.70 16 6 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 7 N -0.71 -19.47 5.07 -446.32 -2.26 -21.73 16 8 C 0.59 18.30 7.74 86.45 0.67 18.97 16 9 O -0.56 -21.71 13.99 -4.31 -0.06 -21.77 16 10 C -0.32 -8.01 6.48 23.88 0.15 -7.86 16 11 S 0.22 3.08 22.35 -56.49 -1.26 1.82 16 12 C 0.05 0.61 12.22 130.60 1.60 2.21 16 13 N -0.50 -10.09 9.81 -190.40 -1.87 -11.96 16 14 C 0.17 4.25 6.41 42.09 0.27 4.52 16 15 C -0.12 -3.27 5.43 -11.54 -0.06 -3.33 16 16 C -0.15 -2.98 10.09 30.62 0.31 -2.67 16 17 C -0.15 -3.22 10.24 30.62 0.31 -2.90 16 18 C -0.13 -5.26 5.66 30.68 0.17 -5.09 16 19 C 0.18 9.30 5.28 86.36 0.46 9.76 16 20 N -0.60 -29.64 2.99 -675.24 -2.02 -31.66 16 21 C -0.25 -13.21 8.57 84.03 0.72 -12.49 16 22 H 0.08 4.01 6.24 -2.91 -0.02 3.99 16 23 C -0.06 -3.13 4.94 84.86 0.42 -2.71 16 24 N -0.94 -56.74 11.23 21.65 0.24 -56.49 16 25 Si 0.96 44.72 29.58 68.60 2.03 46.75 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 29 H 0.06 1.88 7.44 -2.38 -0.02 1.86 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.55 7.62 -2.39 -0.02 1.53 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.41 8.54 7.79 -92.71 -0.72 7.82 16 35 H 0.25 0.62 8.06 -2.91 -0.02 0.60 16 36 H 0.12 3.71 6.17 -2.39 -0.01 3.69 16 37 H 0.11 2.08 7.74 -2.39 -0.02 2.07 16 38 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.05 3.07 6.15 -2.39 -0.01 3.05 16 44 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -72.47 372.62 1.10 -71.37 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.29 Total: 20.33 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.00 Total: 3.34 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -5.91 Total: -121.84 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.06 Total: -21.77 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.26 Total: 1.82 kcal Total: -72.47 1.10 -71.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947792286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.278 kcal (2) G-P(sol) polarization free energy of solvation -72.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds