Wall clock time and date at job start Tue Mar 31 2020 19:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.58821 * 2 1 4 4 C 1.53187 * 109.70508 * 239.64252 * 2 1 3 5 5 C 1.53043 * 109.31537 * 294.77979 * 4 2 1 6 6 H 1.08994 * 109.45558 * 58.65301 * 5 4 2 7 7 N 1.46497 * 109.45853 * 178.61280 * 5 4 2 8 8 C 1.34780 * 119.99791 * 204.99685 * 7 5 4 9 9 O 1.21694 * 119.99825 * 0.02562 * 8 7 5 10 10 C 1.46680 * 120.00112 * 180.02562 * 8 7 5 11 11 S 1.76208 * 126.13097 * 0.02943 * 10 8 7 12 12 C 1.70950 * 90.31583 * 179.97438 * 11 10 8 13 13 N 1.29427 * 110.38992 * 359.97438 * 12 11 10 14 14 C 1.30944 * 117.36588 * 359.71017 * 13 12 11 15 15 C 1.50696 * 122.90877 * 180.35129 * 14 13 12 16 16 C 1.53007 * 117.50031 * 8.93385 * 15 14 13 17 17 C 1.53000 * 117.49626 * 300.27554 * 15 14 13 18 18 C 1.53039 * 109.53595 * 298.63643 * 5 4 2 19 19 C 1.52756 * 109.38606 * 61.23456 * 18 5 4 20 20 N 1.46919 * 109.01119 * 305.59025 * 19 18 5 21 21 C 1.36940 * 120.63281 * 233.58136 * 20 19 18 22 22 H 1.08005 * 119.99910 * 151.67813 * 21 20 19 23 23 C 1.38811 * 119.99865 * 331.67807 * 21 20 19 24 24 N 1.31624 * 119.99873 * 143.87116 * 23 21 20 25 25 Si 1.86802 * 119.99921 * 323.87009 * 23 21 20 26 26 H 1.48496 * 109.46890 * 274.50683 * 25 23 21 27 27 H 1.48497 * 109.46893 * 34.50881 * 25 23 21 28 28 H 1.48498 * 109.46826 * 154.50602 * 25 23 21 29 29 H 1.09005 * 109.47244 * 299.71765 * 1 2 3 30 30 H 1.09002 * 109.47236 * 59.71857 * 1 2 3 31 31 H 1.08998 * 109.47348 * 179.71971 * 1 2 3 32 32 H 1.09005 * 109.49579 * 54.73325 * 4 2 1 33 33 H 1.09003 * 109.49960 * 174.82588 * 4 2 1 34 34 H 0.96996 * 120.00520 * 25.00105 * 7 5 4 35 35 H 1.08003 * 124.80931 * 179.97438 * 12 11 10 36 36 H 1.08999 * 115.55691 * 154.60620 * 15 14 13 37 37 H 1.09007 * 117.49248 * 0.02562 * 16 15 14 38 38 H 1.08993 * 117.50030 * 145.02252 * 16 15 14 39 39 H 1.09003 * 117.49681 * 214.98064 * 17 15 14 40 40 H 1.09006 * 117.50016 * 359.97438 * 17 15 14 41 41 H 1.08996 * 109.49985 * 181.32023 * 18 5 4 42 42 H 1.09008 * 109.49718 * 301.41011 * 18 5 4 43 43 H 1.09005 * 109.51310 * 185.70470 * 19 18 5 44 44 H 1.09006 * 109.42866 * 65.42473 * 19 18 5 45 45 H 0.96996 * 119.99472 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 1.6472 -2.2044 -1.1691 6 1 0.5624 -2.2839 -1.0995 7 7 2.1110 -2.8976 -2.3735 8 6 1.4865 -4.0173 -2.7891 9 8 0.5371 -4.4521 -2.1642 10 6 1.9511 -4.7117 -3.9947 11 16 3.3024 -4.2277 -5.0168 12 6 3.0235 -5.5703 -6.0376 13 7 2.0188 -6.2632 -5.6068 14 6 1.4221 -5.8458 -4.5186 15 6 0.2463 -6.5605 -3.9040 16 6 -0.1225 -7.9323 -4.4724 17 6 -1.0107 -6.7196 -4.7616 18 6 2.2856 -2.8448 0.0656 19 6 1.7768 -2.1410 1.3223 20 7 2.0225 -0.6981 1.1954 21 6 2.7026 -0.0177 2.1700 22 1 3.2713 0.8646 1.9160 23 6 2.6611 -0.4622 3.4844 24 7 3.7272 -0.3560 4.2490 25 14 1.0921 -1.2109 4.1680 26 1 0.2041 -0.1300 4.6662 27 1 0.3972 -1.9681 3.0962 28 1 1.4281 -2.1298 5.2851 29 1 -0.3634 0.5095 0.8925 30 1 -0.3634 0.5182 -0.8875 31 1 -0.3634 -1.0276 -0.0050 32 1 1.6106 -0.2791 -2.1366 33 1 3.1325 -0.6476 -1.2891 34 1 2.8675 -2.5508 -2.8718 35 1 3.6035 -5.8069 -6.9174 36 1 0.1091 -6.4059 -2.8338 37 1 0.4857 -8.3180 -5.2908 38 1 -0.5026 -8.6799 -3.7763 39 1 -1.9748 -6.6700 -4.2555 40 1 -0.9874 -6.3069 -5.7702 41 1 2.0201 -3.9012 0.1059 42 1 3.3695 -2.7437 0.0086 43 1 2.3049 -2.5263 2.1945 44 1 0.7072 -2.3214 1.4310 45 1 3.6982 -0.6669 5.1673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947792287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:56 Heat of formation + Delta-G solvation = 63.584001 kcal Electronic energy + Delta-G solvation = -26932.970484 eV Core-core repulsion = 23272.026830 eV Total energy + Delta-G solvation = -3660.943654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.74476 -39.57074 -37.91232 -36.65608 -34.67417 -32.60641 -31.49777 -30.96263 -29.89214 -27.23338 -26.33054 -24.31761 -23.23436 -22.60542 -22.49089 -22.24889 -21.01805 -19.82064 -18.52535 -18.21211 -17.28594 -16.63328 -16.23562 -15.75508 -15.45993 -15.05488 -14.61613 -14.54482 -14.34218 -14.25288 -13.86108 -13.68531 -13.03819 -13.02481 -12.81480 -12.56113 -12.33486 -12.04531 -11.79935 -11.66783 -11.53002 -11.09930 -10.99014 -10.94741 -10.64416 -10.60152 -10.53502 -10.32121 -10.26953 -10.00449 -9.87275 -9.83864 -9.62352 -9.38504 -9.04983 -8.82503 -8.39072 -7.01010 -6.05355 -3.25863 -0.04745 0.87126 1.24003 2.14307 3.02820 3.09323 3.42521 3.53162 3.58866 3.71311 3.89009 4.42017 4.58167 4.64315 4.74108 4.87335 4.88651 4.97766 5.13684 5.23009 5.24709 5.38594 5.50494 5.60564 5.62729 5.78233 5.81920 5.84371 5.98981 6.03669 6.08046 6.15105 6.17234 6.23527 6.36673 6.42610 6.50870 6.65003 6.73762 6.82375 6.86215 7.05117 7.25205 7.47174 7.96443 8.12399 8.30339 8.95442 9.72672 10.14040 11.09338 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.003002 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.514168 B = 9325.801308 C = 9905.351670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.172 3.828 3 H 0.075 0.925 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.089 0.911 7 N -0.717 5.717 8 C 0.594 3.406 9 O -0.520 6.520 10 C -0.283 4.283 11 S 0.163 5.837 12 C 0.033 3.967 13 N -0.472 5.472 14 C 0.172 3.828 15 C -0.097 4.097 16 C -0.164 4.164 17 C -0.157 4.157 18 C -0.145 4.145 19 C 0.147 3.853 20 N -0.593 5.593 21 C -0.272 4.272 22 H 0.080 0.920 23 C 0.041 3.959 24 N -0.883 5.883 25 Si 0.831 3.169 26 H -0.291 1.291 27 H -0.252 1.252 28 H -0.297 1.297 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.393 0.607 35 H 0.206 0.794 36 H 0.144 0.856 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.031 0.969 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 -9.571 -22.568 24.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.064 3.936 3 H 0.093 0.907 4 C -0.174 4.174 5 C 0.048 3.952 6 H 0.107 0.893 7 N -0.367 5.367 8 C 0.379 3.621 9 O -0.397 6.397 10 C -0.407 4.407 11 S 0.418 5.582 12 C -0.262 4.262 13 N -0.185 5.185 14 C 0.035 3.965 15 C -0.118 4.118 16 C -0.201 4.201 17 C -0.194 4.194 18 C -0.185 4.185 19 C 0.021 3.979 20 N -0.316 5.316 21 C -0.400 4.400 22 H 0.098 0.902 23 C -0.160 4.160 24 N -0.523 5.523 25 Si 0.658 3.342 26 H -0.218 1.218 27 H -0.176 1.176 28 H -0.224 1.224 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.227 0.773 35 H 0.223 0.777 36 H 0.162 0.838 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.380 -9.498 -22.267 24.325 hybrid contribution -0.970 -0.626 0.556 1.281 sum -3.349 -10.124 -21.711 24.188 Atomic orbital electron populations 1.22361 0.98616 1.01150 1.00669 1.20473 0.91592 0.95662 0.85872 0.90688 1.22300 1.01732 0.93697 0.99627 1.21139 0.99913 0.91476 0.82718 0.89260 1.46215 1.34503 1.26553 1.29397 1.16657 0.82784 0.80491 0.82194 1.90791 1.27541 1.65287 1.56129 1.25562 1.05242 1.04463 1.05449 1.83979 1.27949 1.27703 1.18587 1.28665 0.98146 0.95262 1.04145 1.65970 1.08465 1.31189 1.12906 1.19740 0.96058 0.91086 0.89661 1.20921 0.91757 0.98868 1.00230 1.23000 1.03032 0.90519 1.03544 1.22924 0.94110 1.02017 1.00386 1.22405 1.01011 0.99156 0.95910 1.21253 0.97631 0.84055 0.94967 1.44445 1.64635 1.02441 1.20050 1.18722 1.22643 1.12363 0.86260 0.90243 1.25241 0.96780 0.97826 0.96155 1.70097 1.26363 1.47111 1.08702 0.87725 0.87907 0.79009 0.79545 1.21833 1.17645 1.22376 0.92579 0.93723 0.93226 0.92132 0.91333 0.77278 0.77743 0.83800 0.87871 0.88400 0.88091 0.88931 0.92412 0.91713 0.91340 0.95122 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.04 37.15 0.34 -2.53 16 2 C 0.17 3.16 3.28 -67.60 -0.22 2.94 16 3 H 0.07 1.39 7.93 -51.93 -0.41 0.98 16 4 C -0.13 -2.03 5.02 -26.61 -0.13 -2.17 16 5 C 0.15 2.38 2.21 -67.89 -0.15 2.23 16 6 H 0.09 1.55 5.94 -51.93 -0.31 1.24 16 7 N -0.72 -9.62 5.07 -55.07 -0.28 -9.90 16 8 C 0.59 8.65 7.74 -12.85 -0.10 8.55 16 9 O -0.52 -9.04 13.99 5.19 0.07 -8.97 16 10 C -0.28 -3.47 6.48 -37.10 -0.24 -3.71 16 11 S 0.16 1.33 22.35 -107.50 -2.40 -1.07 16 12 C 0.03 0.26 12.22 51.75 0.63 0.89 16 13 N -0.47 -5.14 9.81 -11.53 -0.11 -5.26 16 14 C 0.17 2.13 6.41 -83.89 -0.54 1.59 16 15 C -0.10 -1.19 5.43 -91.77 -0.50 -1.69 16 16 C -0.16 -1.63 10.09 -26.69 -0.27 -1.90 16 17 C -0.16 -1.61 10.24 -26.69 -0.27 -1.88 16 18 C -0.14 -2.64 5.63 -26.84 -0.15 -2.79 16 19 C 0.15 3.19 3.90 -3.94 -0.02 3.17 16 20 N -0.59 -13.44 2.42 -165.04 -0.40 -13.84 16 21 C -0.27 -7.33 9.84 -15.06 -0.15 -7.48 16 22 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 23 C 0.04 1.17 4.81 -17.43 -0.08 1.08 16 24 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 25 Si 0.83 21.07 26.72 -169.99 -4.54 16.52 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 27 H -0.25 -6.04 4.66 56.52 0.26 -5.78 16 28 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.86 5.76 -51.93 -0.30 0.56 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.39 4.33 7.79 -40.82 -0.32 4.02 16 35 H 0.21 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.14 2.01 6.17 -51.93 -0.32 1.69 16 37 H 0.10 1.03 7.74 -51.92 -0.40 0.63 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 43 H 0.07 1.63 5.86 -51.93 -0.30 1.32 16 44 H 0.03 0.68 6.00 -51.93 -0.31 0.37 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -31.86 366.46 -9.82 -41.68 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.60 Total: 4.63 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.86 Total: -3.69 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.02 Total: -54.62 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.54 Total: 16.52 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.40 Total: -1.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.86 -9.82 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947792287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.260 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds