Wall clock time and date at job start Tue Mar 31 2020 19:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.58821 * 2 1 4 4 C 1.53187 * 109.70508 * 239.64252 * 2 1 3 5 5 C 1.53043 * 109.31537 * 294.77979 * 4 2 1 6 6 H 1.08994 * 109.45558 * 58.65301 * 5 4 2 7 7 N 1.46497 * 109.45853 * 178.61280 * 5 4 2 8 8 C 1.34780 * 119.99791 * 204.99685 * 7 5 4 9 9 O 1.21694 * 119.99825 * 0.02562 * 8 7 5 10 10 C 1.46680 * 120.00112 * 180.02562 * 8 7 5 11 11 S 1.76208 * 126.13097 * 0.02943 * 10 8 7 12 12 C 1.70950 * 90.31583 * 179.97438 * 11 10 8 13 13 N 1.29427 * 110.38992 * 359.97438 * 12 11 10 14 14 C 1.30944 * 117.36588 * 359.71017 * 13 12 11 15 15 C 1.50696 * 122.90877 * 180.35129 * 14 13 12 16 16 C 1.53007 * 117.50031 * 8.93385 * 15 14 13 17 17 C 1.53000 * 117.49626 * 300.27554 * 15 14 13 18 18 C 1.53039 * 109.53595 * 298.63643 * 5 4 2 19 19 C 1.52756 * 109.38606 * 61.23456 * 18 5 4 20 20 N 1.46919 * 109.01119 * 305.59025 * 19 18 5 21 21 C 1.36940 * 120.63281 * 233.58136 * 20 19 18 22 22 H 1.08005 * 119.99910 * 151.67813 * 21 20 19 23 23 C 1.38811 * 119.99865 * 331.67807 * 21 20 19 24 24 N 1.31624 * 119.99873 * 143.87116 * 23 21 20 25 25 Si 1.86802 * 119.99921 * 323.87009 * 23 21 20 26 26 H 1.48496 * 109.46890 * 274.50683 * 25 23 21 27 27 H 1.48497 * 109.46893 * 34.50881 * 25 23 21 28 28 H 1.48498 * 109.46826 * 154.50602 * 25 23 21 29 29 H 1.09005 * 109.47244 * 299.71765 * 1 2 3 30 30 H 1.09002 * 109.47236 * 59.71857 * 1 2 3 31 31 H 1.08998 * 109.47348 * 179.71971 * 1 2 3 32 32 H 1.09005 * 109.49579 * 54.73325 * 4 2 1 33 33 H 1.09003 * 109.49960 * 174.82588 * 4 2 1 34 34 H 0.96996 * 120.00520 * 25.00105 * 7 5 4 35 35 H 1.08003 * 124.80931 * 179.97438 * 12 11 10 36 36 H 1.08999 * 115.55691 * 154.60620 * 15 14 13 37 37 H 1.09007 * 117.49248 * 0.02562 * 16 15 14 38 38 H 1.08993 * 117.50030 * 145.02252 * 16 15 14 39 39 H 1.09003 * 117.49681 * 214.98064 * 17 15 14 40 40 H 1.09006 * 117.50016 * 359.97438 * 17 15 14 41 41 H 1.08996 * 109.49985 * 181.32023 * 18 5 4 42 42 H 1.09008 * 109.49718 * 301.41011 * 18 5 4 43 43 H 1.09005 * 109.51310 * 185.70470 * 19 18 5 44 44 H 1.09006 * 109.42866 * 65.42473 * 19 18 5 45 45 H 0.96996 * 119.99472 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 1.6472 -2.2044 -1.1691 6 1 0.5624 -2.2839 -1.0995 7 7 2.1110 -2.8976 -2.3735 8 6 1.4865 -4.0173 -2.7891 9 8 0.5371 -4.4521 -2.1642 10 6 1.9511 -4.7117 -3.9947 11 16 3.3024 -4.2277 -5.0168 12 6 3.0235 -5.5703 -6.0376 13 7 2.0188 -6.2632 -5.6068 14 6 1.4221 -5.8458 -4.5186 15 6 0.2463 -6.5605 -3.9040 16 6 -0.1225 -7.9323 -4.4724 17 6 -1.0107 -6.7196 -4.7616 18 6 2.2856 -2.8448 0.0656 19 6 1.7768 -2.1410 1.3223 20 7 2.0225 -0.6981 1.1954 21 6 2.7026 -0.0177 2.1700 22 1 3.2713 0.8646 1.9160 23 6 2.6611 -0.4622 3.4844 24 7 3.7272 -0.3560 4.2490 25 14 1.0921 -1.2109 4.1680 26 1 0.2041 -0.1300 4.6662 27 1 0.3972 -1.9681 3.0962 28 1 1.4281 -2.1298 5.2851 29 1 -0.3634 0.5095 0.8925 30 1 -0.3634 0.5182 -0.8875 31 1 -0.3634 -1.0276 -0.0050 32 1 1.6106 -0.2791 -2.1366 33 1 3.1325 -0.6476 -1.2891 34 1 2.8675 -2.5508 -2.8718 35 1 3.6035 -5.8069 -6.9174 36 1 0.1091 -6.4059 -2.8338 37 1 0.4857 -8.3180 -5.2908 38 1 -0.5026 -8.6799 -3.7763 39 1 -1.9748 -6.6700 -4.2555 40 1 -0.9874 -6.3069 -5.7702 41 1 2.0201 -3.9012 0.1059 42 1 3.3695 -2.7437 0.0086 43 1 2.3049 -2.5263 2.1945 44 1 0.7072 -2.3214 1.4310 45 1 3.6982 -0.6669 5.1673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947792287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:55 Heat of formation + Delta-G solvation = 42.948643 kcal Electronic energy + Delta-G solvation = -26933.865300 eV Core-core repulsion = 23272.026830 eV Total energy + Delta-G solvation = -3661.838470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64553 -40.70725 -39.32122 -37.45643 -36.10189 -34.40793 -32.89969 -32.39221 -31.19137 -28.66799 -27.19923 -25.98080 -24.37491 -24.09530 -23.47208 -23.25054 -22.22644 -20.90569 -19.91202 -19.08835 -18.82052 -17.96209 -17.37105 -16.99537 -16.53877 -16.33602 -16.05882 -15.66935 -15.43063 -15.25842 -15.19002 -14.88066 -14.73222 -14.51807 -14.33262 -13.95542 -13.88798 -13.35782 -13.02707 -12.73302 -12.64504 -12.57479 -12.43044 -12.41921 -12.15106 -12.02856 -11.77561 -11.68965 -11.45101 -11.38285 -11.18932 -11.06847 -10.70769 -10.63999 -10.48985 -10.12705 -9.71969 -8.94049 -8.22767 -5.38034 -0.81101 0.16481 0.53431 1.33916 1.36069 1.45037 1.51065 1.97874 2.03617 2.46910 2.93652 2.95860 3.14150 3.38386 3.57589 3.72387 3.88605 3.95009 3.98578 4.10602 4.21605 4.22456 4.30996 4.43812 4.46012 4.58690 4.66123 4.72955 4.74713 4.81201 4.85788 4.95538 5.03266 5.03829 5.07920 5.14247 5.19477 5.24626 5.28190 5.30004 5.44021 5.59921 5.90534 6.15541 6.36883 6.56471 6.96004 7.06527 7.67725 8.11663 8.95534 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.003002 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.514168 B = 9325.801308 C = 9905.351670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.163 3.837 3 H 0.073 0.927 4 C -0.122 4.122 5 C 0.161 3.839 6 H 0.079 0.921 7 N -0.707 5.707 8 C 0.594 3.406 9 O -0.556 6.556 10 C -0.325 4.325 11 S 0.221 5.779 12 C 0.049 3.951 13 N -0.497 5.497 14 C 0.169 3.831 15 C -0.123 4.123 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.134 4.134 19 C 0.148 3.852 20 N -0.603 5.603 21 C -0.254 4.254 22 H 0.055 0.945 23 C -0.010 4.010 24 N -0.930 5.930 25 Si 0.884 3.116 26 H -0.297 1.297 27 H -0.234 1.234 28 H -0.305 1.305 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.407 0.593 35 H 0.249 0.751 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.041 0.959 44 H 0.029 0.971 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 -10.086 -26.251 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.056 3.944 3 H 0.091 0.909 4 C -0.161 4.161 5 C 0.057 3.943 6 H 0.097 0.903 7 N -0.358 5.358 8 C 0.380 3.620 9 O -0.437 6.437 10 C -0.449 4.449 11 S 0.477 5.523 12 C -0.246 4.246 13 N -0.211 5.211 14 C 0.031 3.969 15 C -0.143 4.143 16 C -0.186 4.186 17 C -0.188 4.188 18 C -0.174 4.174 19 C 0.022 3.978 20 N -0.327 5.327 21 C -0.383 4.383 22 H 0.073 0.927 23 C -0.207 4.207 24 N -0.574 5.574 25 Si 0.712 3.288 26 H -0.225 1.225 27 H -0.158 1.158 28 H -0.232 1.232 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.244 0.756 35 H 0.264 0.736 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.574 -10.004 -26.018 27.993 hybrid contribution -0.823 -0.453 1.545 1.808 sum -3.397 -10.457 -24.473 26.830 Atomic orbital electron populations 1.22258 0.97095 1.01104 1.01566 1.20731 0.92736 0.95649 0.85244 0.90906 1.22158 1.01982 0.92769 0.99165 1.20828 0.99030 0.91875 0.82560 0.90311 1.45946 1.34902 1.26324 1.28597 1.16963 0.82188 0.80250 0.82600 1.90771 1.29177 1.66178 1.57536 1.25381 1.08118 1.05317 1.06055 1.83733 1.25069 1.26826 1.16697 1.29474 0.96691 0.94052 1.04363 1.66025 1.09885 1.32271 1.12927 1.19829 0.95982 0.91038 0.90094 1.20856 0.93232 1.00878 0.99357 1.23033 1.02315 0.89995 1.03304 1.22962 0.93791 1.01933 1.00065 1.22224 1.00699 0.98809 0.95689 1.21148 0.97128 0.83819 0.95743 1.44546 1.64852 1.02931 1.20327 1.18715 1.21437 1.11094 0.87071 0.92701 1.25692 0.98615 0.99653 0.96763 1.70175 1.27964 1.50232 1.08998 0.86867 0.84801 0.78097 0.79041 1.22534 1.15803 1.23225 0.94328 0.90165 0.93728 0.88557 0.91117 0.75634 0.73553 0.86257 0.87697 0.87271 0.87454 0.88731 0.92621 0.92110 0.94044 0.95334 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 9.04 71.98 0.65 -4.49 16 2 C 0.16 5.72 3.28 44.97 0.15 5.86 16 3 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 4 C -0.12 -3.35 5.02 30.67 0.15 -3.20 16 5 C 0.16 4.82 2.21 45.02 0.10 4.92 16 6 H 0.08 2.60 5.94 -2.39 -0.01 2.59 16 7 N -0.71 -17.59 5.07 -446.38 -2.26 -19.85 16 8 C 0.59 16.70 7.74 86.45 0.67 17.37 16 9 O -0.56 -19.48 13.99 -4.33 -0.06 -19.54 16 10 C -0.32 -7.45 6.48 23.88 0.15 -7.30 16 11 S 0.22 2.86 22.35 -56.49 -1.26 1.60 16 12 C 0.05 0.57 12.22 130.60 1.60 2.17 16 13 N -0.50 -9.64 9.81 -190.40 -1.87 -11.50 16 14 C 0.17 3.99 6.41 42.09 0.27 4.26 16 15 C -0.12 -2.98 5.43 -11.54 -0.06 -3.04 16 16 C -0.15 -2.82 10.09 30.62 0.31 -2.51 16 17 C -0.15 -2.95 10.24 30.62 0.31 -2.64 16 18 C -0.13 -4.82 5.63 30.53 0.17 -4.65 16 19 C 0.15 6.39 3.90 86.22 0.34 6.72 16 20 N -0.60 -27.19 2.42 -676.06 -1.63 -28.83 16 21 C -0.25 -13.91 9.84 84.03 0.83 -13.08 16 22 H 0.06 3.23 8.06 -2.91 -0.02 3.21 16 23 C -0.01 -0.55 4.81 84.86 0.41 -0.14 16 24 N -0.93 -57.50 13.97 21.65 0.30 -57.20 16 25 Si 0.88 44.77 26.72 68.60 1.83 46.60 16 26 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 27 H -0.23 -11.03 4.66 99.48 0.46 -10.57 16 28 H -0.30 -15.73 7.11 99.48 0.71 -15.03 16 29 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.46 5.76 -2.39 -0.01 1.45 16 32 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.41 7.80 7.79 -92.71 -0.72 7.08 16 35 H 0.25 0.54 8.06 -2.91 -0.02 0.52 16 36 H 0.12 3.48 6.17 -2.39 -0.01 3.47 16 37 H 0.10 1.95 7.74 -2.38 -0.02 1.93 16 38 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.09 1.80 8.14 -2.38 -0.02 1.79 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.04 2.00 5.86 -2.38 -0.01 1.99 16 44 H 0.03 1.26 6.00 -2.38 -0.01 1.24 16 45 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -72.11 366.46 1.15 -70.96 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.05 Total: 17.49 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 6.05 Total: 0.27 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -5.46 Total: -117.38 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.06 Total: -19.54 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.83 Total: 46.60 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.26 Total: 1.60 kcal Total: -72.11 1.15 -70.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947792287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.910 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds