Wall clock time and date at job start Tue Mar 31 2020 19:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.69810 * 2 1 4 4 C 1.53187 * 109.58864 * 239.64271 * 2 1 3 5 5 C 1.53036 * 109.31355 * 185.57461 * 4 2 1 6 6 H 1.09004 * 109.45257 * 301.35924 * 5 4 2 7 7 N 1.46496 * 109.46384 * 181.38711 * 5 4 2 8 8 C 1.34772 * 120.00394 * 154.93224 * 7 5 4 9 9 O 1.21686 * 119.99869 * 359.73057 * 8 7 5 10 10 C 1.46680 * 120.00438 * 180.02562 * 8 7 5 11 11 S 1.76219 * 126.12816 * 359.69206 * 10 8 7 12 12 C 1.70958 * 90.31314 * 179.97438 * 11 10 8 13 13 N 1.29432 * 110.38896 * 0.32027 * 12 11 10 14 14 C 1.30944 * 117.36429 * 359.74769 * 13 12 11 15 15 C 1.50700 * 122.89884 * 179.97438 * 14 13 12 16 16 C 1.52994 * 117.50362 * 8.64080 * 15 14 13 17 17 C 1.52990 * 60.00144 * 252.51151 * 16 15 14 18 18 C 1.53044 * 109.53709 * 61.36830 * 5 4 2 19 19 C 1.53195 * 109.31128 * 298.63747 * 18 5 4 20 20 N 1.46922 * 108.77778 * 54.62938 * 19 18 5 21 21 C 1.36947 * 120.62669 * 126.41336 * 20 19 18 22 22 H 1.07998 * 119.99369 * 209.02216 * 21 20 19 23 23 C 1.38807 * 120.00085 * 29.02092 * 21 20 19 24 24 N 1.31616 * 120.00079 * 15.00862 * 23 21 20 25 25 Si 1.86793 * 119.99967 * 195.01275 * 23 21 20 26 26 H 1.48503 * 109.47136 * 59.99816 * 25 23 21 27 27 H 1.48501 * 109.47519 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47210 * 299.99812 * 25 23 21 29 29 H 1.08998 * 109.47120 * 299.64186 * 1 2 3 30 30 H 1.08998 * 109.46887 * 59.64839 * 1 2 3 31 31 H 1.09002 * 109.46480 * 179.64451 * 1 2 3 32 32 H 1.09005 * 109.49389 * 65.62508 * 4 2 1 33 33 H 1.08995 * 109.49886 * 305.53196 * 4 2 1 34 34 H 0.96997 * 119.99920 * 334.93456 * 7 5 4 35 35 H 1.07999 * 124.80478 * 180.02562 * 12 11 10 36 36 H 1.09001 * 115.54308 * 154.35017 * 15 14 13 37 37 H 1.09008 * 117.49565 * 0.02562 * 16 15 14 38 38 H 1.09003 * 117.50102 * 145.02080 * 16 15 14 39 39 H 1.09002 * 117.50104 * 252.51122 * 17 16 15 40 40 H 1.09002 * 117.50392 * 107.49048 * 17 16 15 41 41 H 1.08998 * 109.49719 * 58.58503 * 18 5 4 42 42 H 1.09000 * 109.49846 * 178.68633 * 18 5 4 43 43 H 1.09005 * 109.58809 * 174.42399 * 19 18 5 44 44 H 1.09003 * 109.58265 * 294.70389 * 19 18 5 45 45 H 0.97002 * 120.00338 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5675 -0.8479 -1.1701 6 1 4.0060 0.1475 -1.0990 7 7 4.0654 -1.5156 -2.3752 8 6 5.3291 -1.3009 -2.7914 9 8 6.0552 -0.5486 -2.1688 10 6 5.8274 -1.9691 -3.9984 11 16 4.9207 -3.0844 -5.0179 12 6 6.2767 -3.2640 -6.0434 13 7 7.2660 -2.5494 -5.6122 14 6 7.0707 -1.8442 -4.5263 15 6 8.1355 -0.9698 -3.9157 16 6 9.4223 -0.7600 -4.7162 17 6 9.4334 -1.6452 -3.4684 18 6 3.9570 -1.6656 0.0636 19 6 3.4650 -0.9469 1.3238 20 7 2.0226 -0.6995 1.1945 21 6 1.1537 -1.1127 2.1690 22 1 0.1360 -1.3673 1.9124 23 6 1.5810 -1.2043 3.4865 24 7 2.7043 -0.6261 3.8557 25 14 0.5620 -2.1482 4.7354 26 1 0.4323 -3.5624 4.3012 27 1 1.2309 -2.0971 6.0603 28 1 -0.7871 -1.5360 4.8377 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3632 -1.0277 -0.0064 32 1 1.7661 -0.1668 -2.1368 33 1 1.6031 -1.7253 -1.2913 34 1 3.4854 -2.1123 -2.8737 35 1 6.3054 -3.8892 -6.9236 36 1 7.7716 -0.1335 -3.3188 37 1 9.4986 -1.2541 -5.6848 38 1 9.9053 0.2146 -4.6462 39 1 9.9237 -1.2530 -2.5774 40 1 9.5173 -2.7219 -3.6158 41 1 3.4984 -2.6527 0.0053 42 1 5.0413 -1.7694 0.1038 43 1 3.6518 -1.5717 2.1973 44 1 3.9921 0.0010 1.4331 45 1 3.0032 -0.6904 4.7763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947792288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:59 Heat of formation + Delta-G solvation = 55.844557 kcal Electronic energy + Delta-G solvation = -26724.337614 eV Core-core repulsion = 23063.058352 eV Total energy + Delta-G solvation = -3661.279261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.67722 -39.39815 -37.60114 -36.60362 -34.63950 -32.47470 -31.66936 -30.69214 -29.41831 -26.62419 -26.19174 -24.78503 -23.22882 -22.43423 -22.30283 -21.66978 -20.32718 -19.88049 -19.00620 -18.20516 -17.07501 -16.34781 -16.02165 -15.66505 -15.23318 -15.12553 -14.66721 -14.52010 -14.19677 -13.92855 -13.80624 -13.62129 -13.30645 -12.82496 -12.70453 -12.50759 -11.79667 -11.61578 -11.60681 -11.24691 -11.11172 -10.95999 -10.91321 -10.89947 -10.66236 -10.51271 -10.35194 -10.23570 -10.16136 -10.05662 -9.81347 -9.80251 -9.74470 -9.39593 -8.99038 -8.74625 -8.42685 -6.65286 -5.77070 -3.21313 0.00539 0.91788 1.28657 2.19676 3.11747 3.18500 3.38202 3.44461 3.44650 3.76814 3.94140 4.48149 4.48820 4.69223 4.82638 4.93454 5.03212 5.24393 5.28603 5.35520 5.42237 5.55531 5.56819 5.68237 5.74362 5.87520 5.96268 6.05636 6.13125 6.13728 6.23749 6.29576 6.38141 6.40413 6.48235 6.61571 6.77626 6.83968 7.01035 7.08102 7.29900 7.37821 7.56704 7.70037 7.81823 8.22171 8.46808 9.22269 9.85795 10.42523 11.31517 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.002785 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.145125 B =10052.509612 C =10712.338835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.028 0.972 4 C -0.135 4.135 5 C 0.152 3.848 6 H 0.085 0.915 7 N -0.717 5.717 8 C 0.593 3.407 9 O -0.518 6.518 10 C -0.280 4.280 11 S 0.160 5.840 12 C 0.032 3.968 13 N -0.471 5.471 14 C 0.170 3.830 15 C -0.097 4.097 16 C -0.164 4.164 17 C -0.156 4.156 18 C -0.147 4.147 19 C 0.175 3.825 20 N -0.588 5.588 21 C -0.252 4.252 22 H 0.070 0.930 23 C 0.003 3.997 24 N -0.903 5.903 25 Si 0.901 3.099 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.392 0.608 35 H 0.206 0.794 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.091 0.909 44 H 0.021 0.979 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.256 -4.728 -20.642 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.049 3.951 6 H 0.103 0.897 7 N -0.367 5.367 8 C 0.377 3.623 9 O -0.396 6.396 10 C -0.404 4.404 11 S 0.415 5.585 12 C -0.263 4.263 13 N -0.185 5.185 14 C 0.033 3.967 15 C -0.118 4.118 16 C -0.202 4.202 17 C -0.194 4.194 18 C -0.187 4.187 19 C 0.049 3.951 20 N -0.311 5.311 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.196 4.196 24 N -0.547 5.547 25 Si 0.731 3.269 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.209 1.209 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.225 0.775 35 H 0.222 0.778 36 H 0.162 0.838 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.039 0.961 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.263 -4.650 -20.333 21.778 hybrid contribution -0.168 -0.512 0.610 0.814 sum 6.096 -5.162 -19.723 21.279 Atomic orbital electron populations 1.21794 0.95717 1.01391 1.00401 1.20348 0.93096 0.93572 0.86551 0.95485 1.22400 0.93497 1.01743 0.99837 1.21125 0.94399 0.96822 0.82767 0.89700 1.46259 1.12435 1.48514 1.29452 1.16657 0.82291 0.81146 0.82209 1.90796 1.56109 1.36805 1.55863 1.25592 0.99361 1.10137 1.05340 1.83961 1.17692 1.38408 1.18481 1.28649 0.91737 1.01795 1.04158 1.65969 1.30914 1.08634 1.12958 1.19745 0.92402 0.94783 0.89749 1.20919 0.86251 1.00985 1.03608 1.22983 0.99193 1.01399 0.96576 1.22916 0.98500 0.99125 0.98858 1.22591 0.99842 0.99593 0.96718 1.20756 0.83189 0.97365 0.93832 1.44166 1.02999 1.64888 1.19036 1.19127 0.94813 1.37992 0.86253 0.91257 1.25091 0.97808 0.99698 0.96977 1.70001 1.23275 1.44419 1.16989 0.86396 0.79632 0.80128 0.80733 1.21101 1.21678 1.20922 0.91792 0.94292 0.92780 0.92618 0.91755 0.77477 0.77792 0.83767 0.87921 0.88432 0.88003 0.88934 0.92653 0.92777 0.89097 0.96111 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.94 37.16 0.30 -2.15 16 2 C 0.17 3.43 3.50 -67.60 -0.24 3.20 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.21 4.84 -26.62 -0.13 -2.34 16 5 C 0.15 2.61 2.42 -67.89 -0.16 2.45 16 6 H 0.08 1.63 7.57 -51.93 -0.39 1.23 16 7 N -0.72 -10.34 5.07 -55.08 -0.28 -10.62 16 8 C 0.59 9.17 7.74 -12.85 -0.10 9.07 16 9 O -0.52 -9.57 13.98 5.20 0.07 -9.50 16 10 C -0.28 -3.62 6.48 -37.10 -0.24 -3.86 16 11 S 0.16 1.38 22.35 -107.50 -2.40 -1.02 16 12 C 0.03 0.27 12.22 51.75 0.63 0.90 16 13 N -0.47 -5.35 9.80 -11.53 -0.11 -5.47 16 14 C 0.17 2.21 6.42 -83.89 -0.54 1.67 16 15 C -0.10 -1.25 5.44 -91.78 -0.50 -1.75 16 16 C -0.16 -1.70 10.08 -26.74 -0.27 -1.97 16 17 C -0.16 -1.73 10.23 -26.74 -0.27 -2.00 16 18 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 19 C 0.17 4.18 5.29 -3.71 -0.02 4.16 16 20 N -0.59 -14.19 2.99 -164.77 -0.49 -14.69 16 21 C -0.25 -6.64 8.60 -15.06 -0.13 -6.77 16 22 H 0.07 1.77 6.21 -52.49 -0.33 1.44 16 23 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 24 N -0.90 -25.98 11.14 55.49 0.62 -25.36 16 25 Si 0.90 21.40 29.58 -169.99 -5.03 16.38 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.97 7.45 -51.93 -0.39 0.59 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.39 4.66 7.79 -40.82 -0.32 4.34 16 35 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.14 2.10 6.17 -51.93 -0.32 1.78 16 37 H 0.10 1.07 7.74 -51.92 -0.40 0.66 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -31.07 372.44 -10.56 -41.63 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.64 Total: 5.49 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.91 Total: -2.45 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.27 Total: -56.14 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.40 Total: -1.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.07 -10.56 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947792288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.474 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds