Wall clock time and date at job start Tue Mar 31 2020 19:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.69810 * 2 1 4 4 C 1.53187 * 109.58864 * 239.64271 * 2 1 3 5 5 C 1.53036 * 109.31355 * 185.57461 * 4 2 1 6 6 H 1.09004 * 109.45257 * 301.35924 * 5 4 2 7 7 N 1.46496 * 109.46384 * 181.38711 * 5 4 2 8 8 C 1.34772 * 120.00394 * 154.93224 * 7 5 4 9 9 O 1.21686 * 119.99869 * 359.73057 * 8 7 5 10 10 C 1.46680 * 120.00438 * 180.02562 * 8 7 5 11 11 S 1.76219 * 126.12816 * 359.69206 * 10 8 7 12 12 C 1.70958 * 90.31314 * 179.97438 * 11 10 8 13 13 N 1.29432 * 110.38896 * 0.32027 * 12 11 10 14 14 C 1.30944 * 117.36429 * 359.74769 * 13 12 11 15 15 C 1.50700 * 122.89884 * 179.97438 * 14 13 12 16 16 C 1.52994 * 117.50362 * 8.64080 * 15 14 13 17 17 C 1.52990 * 60.00144 * 252.51151 * 16 15 14 18 18 C 1.53044 * 109.53709 * 61.36830 * 5 4 2 19 19 C 1.53195 * 109.31128 * 298.63747 * 18 5 4 20 20 N 1.46922 * 108.77778 * 54.62938 * 19 18 5 21 21 C 1.36947 * 120.62669 * 126.41336 * 20 19 18 22 22 H 1.07998 * 119.99369 * 209.02216 * 21 20 19 23 23 C 1.38807 * 120.00085 * 29.02092 * 21 20 19 24 24 N 1.31616 * 120.00079 * 15.00862 * 23 21 20 25 25 Si 1.86793 * 119.99967 * 195.01275 * 23 21 20 26 26 H 1.48503 * 109.47136 * 59.99816 * 25 23 21 27 27 H 1.48501 * 109.47519 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47210 * 299.99812 * 25 23 21 29 29 H 1.08998 * 109.47120 * 299.64186 * 1 2 3 30 30 H 1.08998 * 109.46887 * 59.64839 * 1 2 3 31 31 H 1.09002 * 109.46480 * 179.64451 * 1 2 3 32 32 H 1.09005 * 109.49389 * 65.62508 * 4 2 1 33 33 H 1.08995 * 109.49886 * 305.53196 * 4 2 1 34 34 H 0.96997 * 119.99920 * 334.93456 * 7 5 4 35 35 H 1.07999 * 124.80478 * 180.02562 * 12 11 10 36 36 H 1.09001 * 115.54308 * 154.35017 * 15 14 13 37 37 H 1.09008 * 117.49565 * 0.02562 * 16 15 14 38 38 H 1.09003 * 117.50102 * 145.02080 * 16 15 14 39 39 H 1.09002 * 117.50104 * 252.51122 * 17 16 15 40 40 H 1.09002 * 117.50392 * 107.49048 * 17 16 15 41 41 H 1.08998 * 109.49719 * 58.58503 * 18 5 4 42 42 H 1.09000 * 109.49846 * 178.68633 * 18 5 4 43 43 H 1.09005 * 109.58809 * 174.42399 * 19 18 5 44 44 H 1.09003 * 109.58265 * 294.70389 * 19 18 5 45 45 H 0.97002 * 120.00338 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5675 -0.8479 -1.1701 6 1 4.0060 0.1475 -1.0990 7 7 4.0654 -1.5156 -2.3752 8 6 5.3291 -1.3009 -2.7914 9 8 6.0552 -0.5486 -2.1688 10 6 5.8274 -1.9691 -3.9984 11 16 4.9207 -3.0844 -5.0179 12 6 6.2767 -3.2640 -6.0434 13 7 7.2660 -2.5494 -5.6122 14 6 7.0707 -1.8442 -4.5263 15 6 8.1355 -0.9698 -3.9157 16 6 9.4223 -0.7600 -4.7162 17 6 9.4334 -1.6452 -3.4684 18 6 3.9570 -1.6656 0.0636 19 6 3.4650 -0.9469 1.3238 20 7 2.0226 -0.6995 1.1945 21 6 1.1537 -1.1127 2.1690 22 1 0.1360 -1.3673 1.9124 23 6 1.5810 -1.2043 3.4865 24 7 2.7043 -0.6261 3.8557 25 14 0.5620 -2.1482 4.7354 26 1 0.4323 -3.5624 4.3012 27 1 1.2309 -2.0971 6.0603 28 1 -0.7871 -1.5360 4.8377 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3632 -1.0277 -0.0064 32 1 1.7661 -0.1668 -2.1368 33 1 1.6031 -1.7253 -1.2913 34 1 3.4854 -2.1123 -2.8737 35 1 6.3054 -3.8892 -6.9236 36 1 7.7716 -0.1335 -3.3188 37 1 9.4986 -1.2541 -5.6848 38 1 9.9053 0.2146 -4.6462 39 1 9.9237 -1.2530 -2.5774 40 1 9.5173 -2.7219 -3.6158 41 1 3.4984 -2.6527 0.0053 42 1 5.0413 -1.7694 0.1038 43 1 3.6518 -1.5717 2.1973 44 1 3.9921 0.0010 1.4331 45 1 3.0032 -0.6904 4.7763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947792288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:58 Heat of formation + Delta-G solvation = 36.368747 kcal Electronic energy + Delta-G solvation = -26725.182148 eV Core-core repulsion = 23063.058352 eV Total energy + Delta-G solvation = -3662.123796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63354 -40.60600 -39.15029 -37.46850 -36.15347 -34.26034 -33.15328 -31.98011 -30.94555 -28.08603 -27.29076 -26.49370 -24.28333 -23.72125 -23.27581 -23.04447 -21.77514 -21.29405 -20.31748 -19.08684 -18.34113 -17.94768 -17.18533 -17.04629 -16.59576 -16.26766 -15.80663 -15.68882 -15.49504 -15.35080 -15.13582 -14.96485 -14.74033 -14.53863 -14.29282 -13.36535 -13.33474 -12.96532 -12.73847 -12.71229 -12.65474 -12.56791 -12.42733 -12.35815 -12.12237 -11.87227 -11.77876 -11.72594 -11.52952 -11.48418 -11.27518 -11.10141 -10.69941 -10.63871 -10.53709 -10.10554 -9.72026 -8.64844 -7.82775 -5.29413 -0.81331 0.15858 0.53138 1.33683 1.48334 1.50566 1.56840 1.98226 2.02628 2.53540 2.95791 3.13061 3.33450 3.55357 3.61375 3.77512 3.89733 3.96086 4.03926 4.09826 4.21868 4.24353 4.37775 4.45607 4.60366 4.69331 4.72291 4.74396 4.78946 4.85244 4.94610 5.02535 5.04927 5.06111 5.15016 5.19797 5.27374 5.38259 5.43132 5.52996 5.56042 5.71435 5.73608 6.37077 6.43760 6.56200 7.07386 7.17783 7.89573 8.42249 9.24502 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.002785 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.145125 B =10052.509612 C =10712.338835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.160 3.840 3 H 0.012 0.988 4 C -0.119 4.119 5 C 0.164 3.836 6 H 0.061 0.939 7 N -0.705 5.705 8 C 0.591 3.409 9 O -0.559 6.559 10 C -0.324 4.324 11 S 0.223 5.777 12 C 0.049 3.951 13 N -0.496 5.496 14 C 0.169 3.831 15 C -0.124 4.124 16 C -0.144 4.144 17 C -0.155 4.155 18 C -0.130 4.130 19 C 0.184 3.816 20 N -0.603 5.603 21 C -0.250 4.250 22 H 0.081 0.919 23 C -0.057 4.057 24 N -0.941 5.941 25 Si 0.964 3.036 26 H -0.277 1.277 27 H -0.301 1.301 28 H -0.274 1.274 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.408 0.592 35 H 0.250 0.750 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.056 0.944 44 H -0.012 1.012 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 -6.672 -24.152 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.030 0.970 4 C -0.158 4.158 5 C 0.059 3.941 6 H 0.079 0.921 7 N -0.356 5.356 8 C 0.378 3.622 9 O -0.440 6.440 10 C -0.448 4.448 11 S 0.479 5.521 12 C -0.245 4.245 13 N -0.210 5.210 14 C 0.031 3.969 15 C -0.144 4.144 16 C -0.181 4.181 17 C -0.193 4.193 18 C -0.171 4.171 19 C 0.057 3.943 20 N -0.327 5.327 21 C -0.380 4.380 22 H 0.099 0.901 23 C -0.251 4.251 24 N -0.588 5.588 25 Si 0.793 3.207 26 H -0.203 1.203 27 H -0.227 1.227 28 H -0.199 1.199 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.244 0.756 35 H 0.266 0.734 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.006 0.994 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.721 -6.622 -23.906 25.252 hybrid contribution 0.310 0.095 1.579 1.612 sum 5.030 -6.527 -22.327 23.799 Atomic orbital electron populations 1.21713 0.93745 1.01780 1.01187 1.20631 0.94792 0.92879 0.86324 0.97024 1.22211 0.92131 1.02425 0.99083 1.20737 0.95215 0.95302 0.82816 0.92064 1.45932 1.12590 1.48598 1.28486 1.17027 0.81928 0.80555 0.82718 1.90779 1.57092 1.38631 1.57478 1.25354 1.00761 1.12863 1.05864 1.83675 1.16153 1.35818 1.16433 1.29497 0.90699 0.99951 1.04347 1.66027 1.32219 1.09911 1.12852 1.19818 0.92321 0.94640 0.90165 1.20854 0.87382 1.01197 1.04982 1.23021 0.97086 1.01798 0.96219 1.22949 0.97464 0.99281 0.99580 1.22320 0.99042 0.99593 0.96116 1.20441 0.83668 0.95497 0.94676 1.44426 1.02604 1.65601 1.20052 1.19531 0.95361 1.36429 0.86651 0.90119 1.25868 0.99069 1.01182 0.99018 1.70187 1.25291 1.46556 1.16755 0.85384 0.78314 0.79080 0.77937 1.20320 1.22727 1.19931 0.94124 0.90397 0.92512 0.89140 0.90473 0.75555 0.73390 0.86332 0.87485 0.87113 0.87701 0.88854 0.92028 0.93736 0.92519 0.99401 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 7.94 71.98 0.57 -3.72 16 2 C 0.16 6.28 3.50 44.98 0.16 6.43 16 3 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 4 C -0.12 -3.64 4.84 30.67 0.15 -3.49 16 5 C 0.16 5.59 2.42 45.02 0.11 5.70 16 6 H 0.06 2.42 7.57 -2.39 -0.02 2.40 16 7 N -0.71 -19.51 5.07 -446.39 -2.26 -21.78 16 8 C 0.59 18.33 7.74 86.45 0.67 19.00 16 9 O -0.56 -21.73 13.98 -4.31 -0.06 -21.79 16 10 C -0.32 -8.02 6.48 23.88 0.15 -7.87 16 11 S 0.22 3.09 22.35 -56.49 -1.26 1.83 16 12 C 0.05 0.62 12.22 130.60 1.60 2.21 16 13 N -0.50 -10.10 9.80 -190.40 -1.87 -11.97 16 14 C 0.17 4.25 6.42 42.09 0.27 4.52 16 15 C -0.12 -3.24 5.44 -11.54 -0.06 -3.30 16 16 C -0.14 -2.90 10.08 30.59 0.31 -2.59 16 17 C -0.15 -3.45 10.23 30.59 0.31 -3.13 16 18 C -0.13 -5.28 5.65 30.67 0.17 -5.11 16 19 C 0.18 9.27 5.29 86.36 0.46 9.72 16 20 N -0.60 -29.66 2.99 -675.23 -2.02 -31.68 16 21 C -0.25 -13.24 8.60 84.03 0.72 -12.52 16 22 H 0.08 4.04 6.21 -2.91 -0.02 4.02 16 23 C -0.06 -3.16 4.96 84.86 0.42 -2.74 16 24 N -0.94 -56.74 11.14 21.65 0.24 -56.50 16 25 Si 0.96 44.73 29.58 68.60 2.03 46.76 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 29 H 0.04 1.54 7.62 -2.39 -0.02 1.53 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.88 7.45 -2.39 -0.02 1.87 16 32 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.41 8.57 7.79 -92.71 -0.72 7.85 16 35 H 0.25 0.63 8.06 -2.91 -0.02 0.61 16 36 H 0.12 3.71 6.17 -2.39 -0.01 3.70 16 37 H 0.11 2.07 7.74 -2.38 -0.02 2.05 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.06 3.23 6.06 -2.38 -0.01 3.21 16 44 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -72.33 372.44 1.10 -71.23 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.29 Total: 20.76 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 6.01 Total: 3.14 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -5.91 Total: -121.92 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.06 Total: -21.79 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.26 Total: 1.83 kcal Total: -72.33 1.10 -71.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947792288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.598 kcal (2) G-P(sol) polarization free energy of solvation -72.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds